2O14

X-Ray Crystal Structure of Protein YXIM_BACsu from Bacillus subtilis. Northeast Structural Genomics Consortium Target SR595

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2o14a1	All beta proteins	Galactose-binding domain-like	Galactose-binding domain-like	YxiM N-terminal domain-like	Hypothetical protein YxiM	(Bacillus subtilis ) [TaxId: 1423 ],	SCOPe (2.08)
A	d2o14a2	Alpha and beta proteins (a/b)	Flavodoxin-like	SGNH hydrolase	YxiM C-terminal domain-like	Hypothetical protein YxiM	(Bacillus subtilis ) [TaxId: 1423 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	YxiM C-terminal domain-like	8022586	4002126	SCOP2 (2022-06-29)
A	SCOP2 Family	YxiM N-terminal domain-like	8022584	4001706	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	SGNH hydrolase-like	8034966	3001315	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	galactose-binding domain-like	8034964	3000087	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	FN3	e2o14A1	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Galactose-binding domain-like	F: FN3	ECOD (1.6)
A	Lipase_GDSL_2	e2o14A2	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: SGNH hydrolase (From Topology)	T: SGNH hydrolase	F: Lipase_GDSL_2	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.60.120.430	Mainly Beta	Sandwich	Jelly Rolls	Galactose-binding lectin	CATH (4.3.0)
A	3.40.50.1110	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	SGNH hydrolase	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF21254	Beta-agarase/YXIM esterase-like, galactose-binding domain-like (AGA-YXIM_GBD)	Beta-agarase/YXIM esterase-like, galactose-binding domain-like	This entry represents the galactose-binding domain found at the C-terminal of beta-agarase A from Zobellia galactanivorans and the N-terminal of the uncharacterised esterase YXIM from Bacillus subtilis and similar sequences.	Domain
A	PF13472	GDSL-like Lipase/Acylhydrolase family (Lipase_GDSL_2)	GDSL-like Lipase/Acylhydrolase family	This family of presumed lipases and related enzymes are similar to Pfam:PF00657.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Hypothetical protein yxiM	hydrolase activity catalytic activity	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR013830	SGNH hydrolase-type esterase domain	Domain
A	IPR049033	Beta-agarase/YXIM esterase-like, galactose-binding domain-like	Domain
A	IPR036514	SGNH hydrolase superfamily	Homologous Superfamily
A	IPR037459	Rhamnogalacturonan acetylesterase RhgT-like	Family
A	IPR008979	Galactose-binding-like domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.