Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad2nyya3 All beta proteins Concanavalin A-like lectins/glucanases Concanavalin A-like lectins/glucanases Clostridium neurotoxins, the second last domain Botulinum neurotoxin (Clostridium botulinum ) [TaxId: 1491 ], SCOPe (2.08)
Ad2nyya4 All beta proteins beta-Trefoil STI-like Clostridium neurotoxins, C-terminal domain Botulinum neurotoxin (Clostridium botulinum ) [TaxId: 1491 ], SCOPe (2.08)
Ad2nyya1 Alpha and beta proteins (a+b) Zincin-like Metalloproteases ('zincins'), catalytic domain Clostridium neurotoxins, catalytic domain Botulinum neurotoxin (Clostridium botulinum ) [TaxId: 1491 ], SCOPe (2.08)
Ad2nyya2 Coiled coil proteins Antiparallel coiled-coil Clostridium neurotoxins, 'coiled-coil' domain Clostridium neurotoxins, 'coiled-coil' domain Botulinum neurotoxin (Clostridium botulinum ) [TaxId: 1491 ], SCOPe (2.08)
B [auth C]d2nyyc2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain-like) automated matches human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
B [auth C]d2nyyc1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin automated matches automated matches human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
C [auth D]d2nyyd1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) Immunoglobulin heavy chain variable domain, VH human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
C [auth D]d2nyyd2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain-like) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
C [auth D]d2nyyd3 Artifacts Tags Tags Tags N-terminal Tags human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyMetalloproteases (zincins) catalytic domain8044155 3001975 SCOP2B (2022-06-29)
ASCOP2B SuperfamilySTI-like8042037 3000715 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyClostridium neurotoxins coiled-coil domain8039654 3001677 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyConcanavalin A-like lectins/glucanases8041451 3000120 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AToxin_R_bind_Ne2nyyA4 A: beta sandwichesX: jelly-rollH: Concanavalin A-likeT: Concanavalin A-like lectins/glucanasesF: Toxin_R_bind_NECOD (1.6)
AToxin_R_bind_Ce2nyyA3 A: beta duplicates or obligate multimersX: beta-Trefoil (From Topology)H: beta-Trefoil (From Topology)T: beta-TrefoilF: Toxin_R_bind_CECOD (1.6)
AToxin_transe2nyyA2 A: alpha complex topologyX: Botulinum neurotoxin A heavy chain (From Topology)H: Botulinum neurotoxin A heavy chain (From Topology)T: Botulinum neurotoxin A heavy chainF: Toxin_transECOD (1.6)
APeptidase_M27e2nyyA1 A: mixed a+b and a/bX: Zincin-likeH: Metalloproteases (zincins) catalytic domain (From Topology)T: Metalloproteases (zincins) catalytic domainF: Peptidase_M27ECOD (1.6)
B [auth C]C1-set_4e2nyyC2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: C1-set_4ECOD (1.6)
B [auth C]V-sete2nyyC1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-setECOD (1.6)
C [auth D]C1-set_1e2nyyD2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: C1-set_1ECOD (1.6)
C [auth D]V-set_10e2nyyD1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-set_10ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

IMGT Antibody Annotation IMGT Database Homepage

ChainProtein NameDescriptionOrganism NameGene Allele Name(s)Domain Name(s)Receptor TypeReceptor DescriptionProvenance Source
B [auth C]CR1 L-KAPPA Chimeric (chimeric) IGKV3-5*01, IGKJ4*01, IGKC*01 V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA IG FAB-GAMMA-1_KAPPA IMGT (202415-0)
C [auth D]CR1 VH-CH1 Chimeric (chimeric) IGHV5-4*02, IGHJ4*01, IGHG1*01, IGHG1*02, IGHG1*04 V-DOMAIN VH, C-DOMAIN CH1 IG FAB-GAMMA-1_KAPPA IMGT (202415-0)

SAbDab Antibody Annotation SAbDab Database Homepage

ChainChain ClassChain SubclassChain TypeAntigen Name(s) Provenance Source
B [auth C]Light ChainIGKV3 Kappabotulinum neurotoxin type aSAbDab (2024-04-19)
C [auth D]Heavy ChainIGHV5 -botulinum neurotoxin type aSAbDab (2024-04-19)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF07951Clostridium neurotoxin, C-terminal receptor binding (Toxin_R_bind_C)Clostridium neurotoxin, C-terminal receptor bindingThe Clostridium neurotoxin family is composed of tetanus neurotoxins and seven serotypes of botulinum neurotoxin. The structure of the botulinum neurotoxin reveals a four domain protein. The N-terminal catalytic domain (Pfam:PF01742), the central tr ...The Clostridium neurotoxin family is composed of tetanus neurotoxins and seven serotypes of botulinum neurotoxin. The structure of the botulinum neurotoxin reveals a four domain protein. The N-terminal catalytic domain (Pfam:PF01742), the central translocation domains and two receptor binding domains [1]. This domains is the C-terminal receptor binding domain, which adopts a modified beta-trefoil fold with a six stranded beta-barrel and a beta-hairpin triplet capping the domain [1]. The first step in the intoxication process is a binding event between this domains and the pre-synaptic nerve ending [1].
Domain
PF07952Clostridium neurotoxin, Translocation domain (Toxin_trans)Clostridium neurotoxin, Translocation domainThe Clostridium neurotoxin family is composed of tetanus neurotoxin and seven serotypes of botulinum neurotoxin. The structure of the botulinum neurotoxin reveals a four domain protein. The N-terminal catalytic domain (Pfam:PF01742), the central tra ...The Clostridium neurotoxin family is composed of tetanus neurotoxin and seven serotypes of botulinum neurotoxin. The structure of the botulinum neurotoxin reveals a four domain protein. The N-terminal catalytic domain (Pfam:PF01742), the central translocation domains and two receptor binding domains [1]. Subsequent to cell surface binding and receptor mediated endocytosis of the neurotoxin, an acid induced conformational change in the neurotoxin translocation domain is believed to allow the domain to penetrate the endosome and from a pore, thereby facilitating the passage of the catalytic domain across the membrane into the cytosol [1]. The structure of the translocation reveals a pair of helices that are 105 Angstroms long and is structurally distinct from other pore forming toxins [1].
Domain
PF07953Clostridium neurotoxin, N-terminal receptor binding (Toxin_R_bind_N)Clostridium neurotoxin, N-terminal receptor bindingThe Clostridium neurotoxin family is composed of tetanus neurotoxin and seven serotypes of botulinum neurotoxin. The structure of the botulinum neurotoxin reveals a four domain protein. The N-terminal catalytic domain (Pfam:PF01742), the central tra ...The Clostridium neurotoxin family is composed of tetanus neurotoxin and seven serotypes of botulinum neurotoxin. The structure of the botulinum neurotoxin reveals a four domain protein. The N-terminal catalytic domain (Pfam:PF01742), the central translocation domains and two receptor binding domains [1]. This domains is the N-terminal receptor binding domain,which is comprised of two seven-stranded beta-sheets sandwiched together to form a jelly role motif [1]. The role of this domain in receptor binding appears to be indirect.
Domain
PF01742Clostridial neurotoxin zinc protease (Peptidase_M27)Clostridial neurotoxin zinc protease- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Botulinum neurotoxin type A
B [auth C]CR1 monoclonal antibody---
C [auth D]CR1 monoclonal antibody---