2IM8

X-Ray Crystal Structure of Protein yppE from Bacillus subtilis. Northeast Structural Genomics Consortium Target SR213.

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d2im8b_	All alpha proteins	Four-helical up-and-down bundle	YppE-like	YppE-like	Hypothetical protein YppE	(Bacillus subtilis ) [TaxId: 1423 ],	SCOPe (2.08)
A	d2im8a_	All alpha proteins	Four-helical up-and-down bundle	YppE-like	YppE-like	Hypothetical protein YppE	(Bacillus subtilis ) [TaxId: 1423 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	YppE-like	8042787	3001068	SCOP2B (2022-06-29)
A	SCOP2 Family	YppE-like	8030408	4001210	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	YppE-like	8042787	3001068	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	PF08807	e2im8B1	A: alpha bundles	X: Four-helical up-and-down bundle	H: YppE-like (From Topology)	T: YppE-like	F: PF08807	ECOD (1.6)
A	PF08807	e2im8A1	A: alpha bundles	X: Four-helical up-and-down bundle	H: YppE-like (From Topology)	T: YppE-like	F: PF08807	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	1.20.120.440	Mainly Alpha	Up-down Bundle	Four Helix Bundle (Hemerythrin (Met), subunit A)	YppE-like	CATH (4.3.0)
A	1.20.120.440	Mainly Alpha	Up-down Bundle	Four Helix Bundle (Hemerythrin (Met), subunit A)	YppE-like	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF08807	Bacterial domain of unknown function (DUF1798) (DUF1798)	Bacterial domain of unknown function (DUF1798)	This domain is found in many hypothetical proteins. The structure of one of the proteins in this family has been solved and it adopts an all alpha helical fold.	Domain

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR023351	YppE-like superfamily	Homologous Superfamily
A, B	IPR014913	YppE-like	Family

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.