Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyWD40 repeat-like8052531 3001694 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyWD40 repeat-like8052530 3001694 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyWD40 repeat-like8052530 3001694 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyWD40 repeat-like8051194 3001694 SCOP2B (2022-06-29)
CSCOP2 FamilySCF complex WHB domain-like8003474 4000322 SCOP2 (2022-06-29)
CSCOP2 FamilyCullin homology region-like8003473 4000271 SCOP2 (2022-06-29)
CSCOP2 FamilyCullin repeat8091644 4002001 SCOP2 (2022-06-29)
CSCOP2 SuperfamilyWinged helix DNA-binding domain8017641 3000034 SCOP2 (2022-06-29)
CSCOP2 SuperfamilyWinged helix DNA-binding domain8017644 3000034 SCOP2 (2022-06-29)
CSCOP2 SuperfamilyCullin repeat-like8017647 3000059 SCOP2 (2022-06-29)
DSCOP2B SuperfamilyRING/U-box like8040866 3000160 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF03178,PF10433e2hyeA3 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF03178,PF10433ECOD (1.6)
APF10433e2hyeA1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF10433ECOD (1.6)
APF03178e2hyeA4 A: alpha arraysX: HTHH: HTHT: tri-helicalF: PF03178ECOD (1.6)
BPF13008,PF14313e2hyeB1 A: a+b three layersX: Nonstructural protein V (From Topology)H: Nonstructural protein V (From Topology)T: Nonstructural protein VF: PF13008,PF14313ECOD (1.6)
CPF00888e2hyeC2 A: alpha arraysX: HTHH: HTHT: wingedF: PF00888ECOD (1.6)
CPF10557e2hyeC1 A: alpha arraysX: HTHH: HTHT: wingedF: PF10557ECOD (1.6)
CPF00888e2hyeC3 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: PF00888ECOD (1.6)
CPF00888e2hyeC5 A: a+b duplicates or obligate multimersX: a+b domain in cullin-like proteins (From Topology)H: a+b domain in cullin-like proteins (From Topology)T: a+b domain in cullin-like proteinsF: PF00888ECOD (1.6)
DPF12678e2hyeD1 A: few secondary structure elementsX: RING/U-box-likeH: RING/U-box-likeT: RING/U-boxF: PF12678ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A2.130.10.10 Mainly Beta 7 Propeller Methylamine Dehydrogenase Chain HCATH (4.3.0)
A1.10.150.910 Mainly Alpha Orthogonal Bundle DNA polymerase domain 1CATH (4.3.0)
D3.30.40.10 Alpha Beta 2-Layer Sandwich Herpes Virus-1 Zinc/RING finger domain, C3HC4 (zinc finger)CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF10433Mono-functional DNA-alkylating methyl methanesulfonate N-term (MMS1_N)Mono-functional DNA-alkylating methyl methanesulfonate N-term- Repeat
PF03178CPSF A subunit region (CPSF_A)CPSF A subunit region- Repeat
PF13008Zinc-binding domain of Paramyxoviridae V protein (zf-Paramyx-P)Zinc-binding domain of Paramyxoviridae V proteinThe Paramyxoviridae, which include such respiroviruses as para-influenzae and measles, produce phosphoproteins - protein P - that are integral to the polymerase transcription-replication complex. Protein P consists of two functionally distinct moieti ...The Paramyxoviridae, which include such respiroviruses as para-influenzae and measles, produce phosphoproteins - protein P - that are integral to the polymerase transcription-replication complex. Protein P consists of two functionally distinct moieties, an N-terminal PNT, and a C-terminal PCT [1]. The P gene region transcribes proteins from all three ORFs, and the V protein consists of the PNT moiety and a more C-terminal 2-zinc-binding domain. This conserved region consists of the two-zinc-binding section sandwiched between beta sheets 6 and 7 of the overall V protein. It is the binding of this core domain of V protein with the DDB1 protein (part of the ubiquitin-ligase complex) of eukaryotes which represents the key element of the virus-host protein interaction [3]. In the Henipavirus family which includes Nipah and Hendra viruses, the V protein is able to block IFN (interferon) signalling by preventing IFN-induced STAT phosphorylation and nuclear translocation [2]. The P gene of morbillivirus is co-transcriptionally edited leading to a V protein being produced.
Domain
PF00888Cullin family (Cullin)Cullin family- Repeat
PF10557Cullin protein neddylation domain (Cullin_Nedd8)Cullin protein neddylation domainThis is the neddylation site of cullin proteins which are a family of structurally related proteins containing an evolutionarily conserved cullin domain. With the exception of APC2, each member of the cullin family is modified by Nedd8 and several cu ...This is the neddylation site of cullin proteins which are a family of structurally related proteins containing an evolutionarily conserved cullin domain. With the exception of APC2, each member of the cullin family is modified by Nedd8 and several cullins function in Ubiquitin-dependent proteolysis, a process in which the 26S proteasome recognises and subsequently degrades a target protein tagged with K48-linked poly-ubiquitin chains. Cullins are molecular scaffolds responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis. Nedd8/Rub1 is a small ubiquitin-like protein, which was originally found to be conjugated to Cdc53, a cullin component of the SCF (Skp1-Cdc53/CUL1-F-box protein) E3 Ub ligase complex in Saccharomyces cerevisiae, and Nedd8 modification has now emerged as a regulatory pathway of fundamental importance for cell cycle control and for embryogenesis in metazoans. The only identified Nedd8 substrates are cullins. Neddylation results in covalent conjugation of a Nedd8 moiety onto a conserved cullin lysine residue [1].
Domain
PF12678RING-H2 zinc finger domain (zf-rbx1)RING-H2 zinc finger domainThere are 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding. The protein, of which this domain is the conserved region, participates in diverse functions relevant to chromosome metabolism and cell ...There are 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding. The protein, of which this domain is the conserved region, participates in diverse functions relevant to chromosome metabolism and cell cycle control [1].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
DNA damage-binding protein 1
Nonstructural protein V
Cullin-4A
RING-box protein 1