2HGK

Solution NMR Structure of protein YqcC from E. coli: Northeast Structural Genomics Consortium target ER225

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2hgka1	All alpha proteins	Bromodomain-like	YqcC-like	YqcC-like	Hypothetical protein YqcC	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
A	d2hgka2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	YqcC-like	8021830	4001339	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	YqcC-like	8034210	3001327	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF04287	e2hgkA1	A: alpha bundles	X: Bromodomain-like	H: YqcC-like (From Topology)	T: YqcC-like	F: PF04287	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.20.1440.40	Mainly Alpha	Up-down Bundle	de novo design (two linked rop proteins)	YqcC-like	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF04287	tRNA pseudouridine synthase C (DUF446)	tRNA pseudouridine synthase C	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Hypothetical protein yqcC	-	cell aggregation biofilm formation biological process involved in intraspecies interaction between organisms single-species biofilm formation cellular process aggregation of unicellular organisms	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR023376	YqcC-like domain	Domain
A	IPR007384	Protein of unknown function UCP006257	Family
A	IPR036814	YqcC-like superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.