2H4O

X-ray Crystal Structure of Protein yonK from Bacillus subtilis. Northeast Structural Genomics Consortium Target SR415

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2h4oa1	Alpha and beta proteins (a+b)	YonK-like	YonK-like	Yonk-like	Uncharacterized protein YonK	(Bacillus subtilis ) [TaxId: 1423 ],	SCOPe (2.08)
B	d2h4ob_	Alpha and beta proteins (a+b)	YonK-like	YonK-like	Yonk-like	Uncharacterized protein YonK	(Bacillus subtilis ) [TaxId: 1423 ],	SCOPe (2.08)
C	d2h4oc_	Alpha and beta proteins (a+b)	YonK-like	YonK-like	Yonk-like	Uncharacterized protein YonK	(Bacillus subtilis ) [TaxId: 1423 ],	SCOPe (2.08)
D	d2h4od_	Alpha and beta proteins (a+b)	YonK-like	YonK-like	Yonk-like	Uncharacterized protein YonK	(Bacillus subtilis ) [TaxId: 1423 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Yonk-like	8021775	4002220	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	YonK-like	8034155	3000968	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	YonK-like	8034155	3000968	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	YonK-like	8034155	3000968	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	YonK-like	8034155	3000968	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	UNK_F_TYPE	e2h4oA1	A: a+b duplicates or obligate multimers	X: Yonk-like (From Topology)	H: Yonk-like (From Topology)	T: Yonk-like	F: UNK_F_TYPE	ECOD (1.6)
B	UNK_F_TYPE	e2h4oB1	A: a+b duplicates or obligate multimers	X: Yonk-like (From Topology)	H: Yonk-like (From Topology)	T: Yonk-like	F: UNK_F_TYPE	ECOD (1.6)
C	UNK_F_TYPE	e2h4oC1	A: a+b duplicates or obligate multimers	X: Yonk-like (From Topology)	H: Yonk-like (From Topology)	T: Yonk-like	F: UNK_F_TYPE	ECOD (1.6)
D	UNK_F_TYPE	e2h4oD1	A: a+b duplicates or obligate multimers	X: Yonk-like (From Topology)	H: Yonk-like (From Topology)	T: Yonk-like	F: UNK_F_TYPE	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	6.20.120.10	Special	Other non-globular	OB fold (Dihydrolipoamide Acetyltransferase, E2P)		CATH (4.3.0)
B	6.20.120.10	Special	Other non-globular	OB fold (Dihydrolipoamide Acetyltransferase, E2P)		CATH (4.3.0)
C	6.20.120.10	Special	Other non-globular	OB fold (Dihydrolipoamide Acetyltransferase, E2P)		CATH (4.3.0)
D	6.20.120.10	Special	Other non-globular	OB fold (Dihydrolipoamide Acetyltransferase, E2P)		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF09642	YonK protein (YonK)	YonK protein	YonK protein is expressed by the bacterial prophage SPbetaC [1]. It is a 63 residue protein that associates into a homo-octamer in the form of a beta-stranded barrel with four outer helical features at points of the compass. Its function is unknown. ...	YonK protein is expressed by the bacterial prophage SPbetaC [1]. It is a 63 residue protein that associates into a homo-octamer in the form of a beta-stranded barrel with four outer helical features at points of the compass. Its function is unknown.	Domain

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR018600	Bacillus phage SPbeta, YonK	Domain
A, B, C, D	IPR037261	YonK superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.