Annotations: 2DYT

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Atg3-like	8045326	4004412	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Type III secretory system chaperone-like	8045321	3000727	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF03987	e2dytA1	A: a+b two layers	X: UBC-like	H: UBC-like (From Topology)	T: UBC-like	F: PF03987	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF03987	Autophagocytosis associated protein, active-site domain (Autophagy_act_C)	Autophagocytosis associated protein, active-site domain	Autophagocytosis is a starvation-induced process responsible for transport of cytoplasmic proteins to the vacuole. The cysteine residue within the HPC motif is the putative active-site residue for recognition of the Apg5 subunit of the autophagosome ...	Autophagocytosis is a starvation-induced process responsible for transport of cytoplasmic proteins to the vacuole. The cysteine residue within the HPC motif is the putative active-site residue for recognition of the Apg5 subunit of the autophagosome complex [2].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Autophagy-related protein 3	aminoacyltransferase activity ubiquitin-like protein transferase activity catalytic activity, acting on a protein acyltransferase activity Atg8-family ligase activity ubiquitin-like protein ligase activity transferase activity catalytic activity	cellular component disassembly catabolic process cellular metabolic process autophagy cellular catabolic process cellular component organization organelle organization organelle disassembly cellular process metabolic process cellular component organization or biogenesis autophagy of mitochondrion process utilizing autophagic mechanism mitochondrion organization cellular component disassembly catabolic process cellular metabolic process autophagy cellular catabolic process cellular component organization organelle organization organelle disassembly cellular process metabolic process cellular component organization or biogenesis autophagy of mitochondrion process utilizing autophagic mechanism mitochondrion organization protein localization establishment of protein localization cellular localization nitrogen compound transport transport protein targeting establishment of protein localization to vacuole cytoplasm to vacuole targeting by the Cvt pathway localization cellular macromolecule localization establishment of localization in cell protein targeting to vacuole organic substance transport protein localization to vacuole intracellular transport establishment of localization establishment of protein localization to organelle protein transport macromolecule localization protein localization to organelle vacuolar transport intracellular protein transport autophagosome assembly organelle assembly vacuole organization macroautophagy autophagosome organization cellular component biogenesis cellular component assembly piecemeal microautophagy of the nucleus microautophagy nucleophagy establishment of protein localization to membrane localization within membrane protein localization to membrane protein targeting to membrane C-terminal protein amino acid modification organonitrogen compound metabolic process cellular biosynthetic process lipoprotein biosynthetic process lipoprotein metabolic process organonitrogen compound biosynthetic process primary metabolic process macromolecule biosynthetic process protein lipidation organic substance metabolic process biosynthetic process macromolecule modification organic substance biosynthetic process protein metabolic process macromolecule metabolic process protein modification process post-translational protein modification C-terminal protein lipidation	membrane-bounded organelle intracellular organelle intracellular anatomical structure mitochondrion organelle cytoplasm cellular anatomical entity intracellular membrane-bounded organelle phagophore cytosol phagophore assembly site

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR007135	Ubiquitin-like-conjugating enzyme Atg3/Atg10	Family
A	IPR046962	Autophagy-related protein 3	Family

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.