2CSB
Crystal structure of Topoisomerase V from Methanopyrus kandleri (61 kDa fragment)
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d2csba1 | All alpha proteins | SAM domain-like | RuvA domain 2-like | Topoisomerase V repeat domain | Topoisomerase V | (Methanopyrus kandleri ) [TaxId: 2320 ], | SCOPe (2.08) |
A | d2csba5 | All alpha proteins | Topoisomerase V catalytic domain-like | Topoisomerase V catalytic domain-like | Topoisomerase V catalytic domain-like | Topoisomerase V, catalytic domain | (Methanopyrus kandleri ) [TaxId: 2320 ], | SCOPe (2.08) |
B | d2csbb2 | All alpha proteins | SAM domain-like | RuvA domain 2-like | Topoisomerase V repeat domain | Topoisomerase V | (Methanopyrus kandleri ) [TaxId: 2320 ], | SCOPe (2.08) |
B | d2csbb1 | All alpha proteins | Topoisomerase V catalytic domain-like | Topoisomerase V catalytic domain-like | Topoisomerase V catalytic domain-like | Topoisomerase V, catalytic domain | (Methanopyrus kandleri ) [TaxId: 2320 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Topoisomerase V repeat domain | 8026868 | 4001369 | SCOP2 (2022-06-29) |
A | SCOP2 Family | Topoisomerase V repeat domain | 8026869 | 4001369 | SCOP2 (2022-06-29) |
A | SCOP2 Family | Topoisomerase V repeat domain | 8026870 | 4001369 | SCOP2 (2022-06-29) |
A | SCOP2 Family | Topoisomerase V repeat domain | 8026872 | 4001369 | SCOP2 (2022-06-29) |
A | SCOP2 Family | Topoisomerase V catalytic domain-like | 8026873 | 4001615 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Helix-hairpin-helix tandem | 8039247 | 3000163 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Helix-hairpin-helix tandem | 8039248 | 3000163 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Helix-hairpin-helix tandem | 8039249 | 3000163 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Helix-hairpin-helix tandem | 8039251 | 3000163 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Topoisomerase V catalytic domain-like | 8039252 | 3001992 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | Helix-hairpin-helix tandem | 8039247 | 3000163 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Topoisomerase V catalytic domain-like | 8039252 | 3001992 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Helix-hairpin-helix tandem | 8039249 | 3000163 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Helix-hairpin-helix tandem | 8039248 | 3000163 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Helix-hairpin-helix tandem | 8039251 | 3000163 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | HTH_AsnC-type_2 | e2csbA1 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: HTH_AsnC-type_2 | ECOD (1.6) |
A | EUF07924 | e2csbA3 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: EUF07924 | ECOD (1.6) |
A | EUF07925 | e2csbA2 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: EUF07925 | ECOD (1.6) |
A | HHH_2_1 | e2csbA4 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: HHH_2_1 | ECOD (1.6) |
A | EUF08090 | e2csbA6 | A: alpha bundles | X: Topoisomerase V catalytic domain-like (From Topology) | H: Topoisomerase V catalytic domain-like (From Topology) | T: Topoisomerase V catalytic domain-like | F: EUF08090 | ECOD (1.6) |
B | HTH_AsnC-type_2 | e2csbB1 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: HTH_AsnC-type_2 | ECOD (1.6) |
B | EUF07924 | e2csbB3 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: EUF07924 | ECOD (1.6) |
B | EUF07925 | e2csbB2 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: EUF07925 | ECOD (1.6) |
B | HHH_2_1 | e2csbB4 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: HHH_2_1 | ECOD (1.6) |
B | EUF08090 | e2csbB6 | A: alpha bundles | X: Topoisomerase V catalytic domain-like (From Topology) | H: Topoisomerase V catalytic domain-like (From Topology) | T: Topoisomerase V catalytic domain-like | F: EUF08090 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 6.10.250.950 | Special | Helix non-globular | Single alpha-helices involved in coiled-coils or other helix-helix interfaces | CATH (4.3.0) | |
B | 6.10.250.950 | Special | Helix non-globular | Single alpha-helices involved in coiled-coils or other helix-helix interfaces | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF14520 | Helix-hairpin-helix domain (HHH_5) | Helix-hairpin-helix domain | - | Domain | |
PF21616 | Topoisomerase V, second (HhH)2 tandem domain (Topo-V_HhH_2_2nd) | Topoisomerase V, second (HhH)2 tandem domain | This domain is found in Topoisomerase V from Methanopyrus kandleri (Topo-V), is a bifunctional enzyme carrying both topoisomerase and DNA repair lyase activities. Topo-V consists of an N-terminal topoisomerase domain followed by 12 tandem (HhH)2 doma ... | Domain | |
PF13412 | Winged helix-turn-helix DNA-binding (HTH_24) | Winged helix-turn-helix DNA-binding | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR049334 | Topoisomerase V, second (HhH)2 tandem domain | Domain | |
IPR010994 | RuvA domain 2-like | Homologous Superfamily | |
IPR024065 | DNA topoisomerase V, catalytic domain superfamily | Homologous Superfamily | |
IPR036388 | Winged helix-like DNA-binding domain superfamily | Homologous Superfamily | |
IPR003583 | Helix-hairpin-helix DNA-binding motif, class 1 | Domain |