2BP7
New crystal form of the Pseudomonas putida branched-chain dehydrogenase (E1)
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Thiamin diphosphate-binding fold (THDP-binding) | 8044276 | 3001790 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Thiamin diphosphate-binding fold (THDP-binding) | 8044276 | 3001790 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | Thiamin diphosphate-binding fold (THDP-binding) | 8044276 | 3001790 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Thiamin diphosphate-binding fold (THDP-binding) | 8044276 | 3001790 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Thiamin diphosphate-binding fold (THDP-binding) | 8044275 | 3001790 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | TK C-terminal domain-like | 8044397 | 3000424 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Thiamin diphosphate-binding fold (THDP-binding) | 8044275 | 3001790 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | TK C-terminal domain-like | 8044397 | 3000424 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | TK C-terminal domain-like | 8044397 | 3000424 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | Thiamin diphosphate-binding fold (THDP-binding) | 8044275 | 3001790 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | TK C-terminal domain-like | 8044397 | 3000424 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Thiamin diphosphate-binding fold (THDP-binding) | 8044275 | 3001790 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | E1_dh | e2bp7A1 | A: a/b three-layered sandwiches | X: Thiamin diphosphate-binding fold (THDP-binding) (From Topology) | H: Thiamin diphosphate-binding fold (THDP-binding) (From Topology) | T: Thiamin diphosphate-binding fold (THDP-binding) | F: E1_dh | ECOD (1.6) |
C | E1_dh | e2bp7C1 | A: a/b three-layered sandwiches | X: Thiamin diphosphate-binding fold (THDP-binding) (From Topology) | H: Thiamin diphosphate-binding fold (THDP-binding) (From Topology) | T: Thiamin diphosphate-binding fold (THDP-binding) | F: E1_dh | ECOD (1.6) |
G | E1_dh | e2bp7G1 | A: a/b three-layered sandwiches | X: Thiamin diphosphate-binding fold (THDP-binding) (From Topology) | H: Thiamin diphosphate-binding fold (THDP-binding) (From Topology) | T: Thiamin diphosphate-binding fold (THDP-binding) | F: E1_dh | ECOD (1.6) |
E | E1_dh | e2bp7E1 | A: a/b three-layered sandwiches | X: Thiamin diphosphate-binding fold (THDP-binding) (From Topology) | H: Thiamin diphosphate-binding fold (THDP-binding) (From Topology) | T: Thiamin diphosphate-binding fold (THDP-binding) | F: E1_dh | ECOD (1.6) |
B | Transketolase_C | e2bp7B1 | A: a/b three-layered sandwiches | X: TK C-terminal domain-like (From Topology) | H: TK C-terminal domain-like (From Topology) | T: TK C-terminal domain-like | F: Transketolase_C | ECOD (1.6) |
B | Transket_pyr | e2bp7B2 | A: a/b three-layered sandwiches | X: Thiamin diphosphate-binding fold (THDP-binding) (From Topology) | H: Thiamin diphosphate-binding fold (THDP-binding) (From Topology) | T: Thiamin diphosphate-binding fold (THDP-binding) | F: Transket_pyr | ECOD (1.6) |
D | Transketolase_C | e2bp7D1 | A: a/b three-layered sandwiches | X: TK C-terminal domain-like (From Topology) | H: TK C-terminal domain-like (From Topology) | T: TK C-terminal domain-like | F: Transketolase_C | ECOD (1.6) |
D | Transket_pyr | e2bp7D2 | A: a/b three-layered sandwiches | X: Thiamin diphosphate-binding fold (THDP-binding) (From Topology) | H: Thiamin diphosphate-binding fold (THDP-binding) (From Topology) | T: Thiamin diphosphate-binding fold (THDP-binding) | F: Transket_pyr | ECOD (1.6) |
H | Transketolase_C | e2bp7H1 | A: a/b three-layered sandwiches | X: TK C-terminal domain-like (From Topology) | H: TK C-terminal domain-like (From Topology) | T: TK C-terminal domain-like | F: Transketolase_C | ECOD (1.6) |
H | Transket_pyr | e2bp7H2 | A: a/b three-layered sandwiches | X: Thiamin diphosphate-binding fold (THDP-binding) (From Topology) | H: Thiamin diphosphate-binding fold (THDP-binding) (From Topology) | T: Thiamin diphosphate-binding fold (THDP-binding) | F: Transket_pyr | ECOD (1.6) |
F | Transketolase_C | e2bp7F1 | A: a/b three-layered sandwiches | X: TK C-terminal domain-like (From Topology) | H: TK C-terminal domain-like (From Topology) | T: TK C-terminal domain-like | F: Transketolase_C | ECOD (1.6) |
F | Transket_pyr | e2bp7F2 | A: a/b three-layered sandwiches | X: Thiamin diphosphate-binding fold (THDP-binding) (From Topology) | H: Thiamin diphosphate-binding fold (THDP-binding) (From Topology) | T: Thiamin diphosphate-binding fold (THDP-binding) | F: Transket_pyr | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF12573 | 2-oxoisovalerate dehydrogenase E1 alpha subunit N terminal (OxoDH_E1alpha_N) | 2-oxoisovalerate dehydrogenase E1 alpha subunit N terminal | - | Family | |
PF00676 | Dehydrogenase E1 component (E1_dh) | Dehydrogenase E1 component | - | Family | |
PF02779 | Transketolase, pyrimidine binding domain (Transket_pyr) | Transketolase, pyrimidine binding domain | This family includes transketolase enzymes, pyruvate dehydrogenases, and branched chain alpha-keto acid decarboxylases. | Domain | |
PF02780 | Transketolase, C-terminal domain (Transketolase_C) | Transketolase, C-terminal domain | The C-terminal domain of transketolase has been proposed as a regulatory molecule binding site [2]. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
2-OXOISOVALERATE DEHYDROGENASE ALPHA SUBUNIT | - | - | ||
2-OXOISOVALERATE DEHYDROGENASE BETA SUBUNIT | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR022593 | 2-oxoisovalerate dehydrogenase, E1 alpha subunit, N-terminal domain | Domain | |
IPR029061 | Thiamin diphosphate-binding fold | Homologous Superfamily | |
IPR001017 | Dehydrogenase, E1 component | Domain | |
IPR005475 | Transketolase-like, pyrimidine-binding domain | Domain | |
IPR029061 | Thiamin diphosphate-binding fold | Homologous Superfamily | |
IPR009014 | Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II | Homologous Superfamily | |
IPR033248 | Transketolase, C-terminal domain | Domain |