2AU3
Crystal Structure of the Aquifex aeolicus primase (Zinc Binding and RNA Polymerase Domains)
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF22410 | e2au3A5 | A: alpha bundles | X: helical domain in DNA primase DnaG catalytic core (From Topology) | H: helical domain in DNA primase DnaG catalytic core (From Topology) | T: helical domain in DNA primase DnaG catalytic core | F: PF22410 | ECOD (1.6) |
A | PF08275 | e2au3A4 | A: a+b two layers | X: N-terminal a+b domain in DNA primase core (From Topology) | H: N-terminal a+b domain in DNA primase core (From Topology) | T: N-terminal a+b domain in DNA primase core | F: PF08275 | ECOD (1.6) |
A | PF13155 | e2au3A6 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: Toprim domain | F: PF13155 | ECOD (1.6) |
A | PF01807 | e2au3A3 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF01807 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.90.580.10 | Alpha Beta | Alpha-Beta Complex | DNA Primase | Chain A | CATH (4.3.0) |
A | 3.90.980.10 | Alpha Beta | Alpha-Beta Complex | DNA primase DNAg catalytic core, N-terminal domain | DNA primase, catalytic core, N-terminal domain | CATH (4.3.0) |
A | 3.40.1360.10 | Alpha Beta | 3-Layer(aba) Sandwich | Dna Topoisomerase Vi A Subunit | Chain: A, domain 2 | CATH (4.3.0) |
A | 1.20.50.30 | Mainly Alpha | Up-down Bundle | Pheromone ER-1 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF08275 | DNA primase catalytic core, N-terminal domain (DNAG_N) | DNA primase catalytic core, N-terminal domain | DNA primase (DNAG) is a a nucleotidyltransferase which synthesises the oligoribonucleotide primers required for DNA replication on the lagging strand of the replication fork. It can also prime the leading strand and has been implicated in cell divisi ... | Domain | |
PF01807 | CHC2 zinc finger (zf-CHC2) | CHC2 zinc finger | This domain is principally involved in DNA binding in DNA primases. | Domain | |
PF01751 | Toprim domain (Toprim) | Toprim domain | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR037068 | DNA primase, catalytic core, N-terminal domain superfamily | Homologous Superfamily | |
IPR034151 | Bacterial DnaG primase, TOPRIM domain | Domain | |
IPR030846 | DNA primase DnaG, bacteria | Family | |
IPR006295 | DNA primase, DnaG | Domain | |
IPR006171 | TOPRIM domain | Domain | |
IPR002694 | Zinc finger, CHC2-type | Domain | |
IPR036977 | DNA Primase, CHC2-type zinc finger | Homologous Superfamily | |
IPR013264 | DNA primase DNAG, catalytic core, N-terminal | Domain |