1Z8Y
Mapping the E2 Glycoprotein of Alphaviruses
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
T | d1z8yt1 | All beta proteins | Trypsin-like serine proteases | Trypsin-like serine proteases | Viral proteases | Viral capsid protein | (Sindbis virus ) [TaxId: 11034 ], | SCOPe (2.08) |
Q | d1z8yq1 | All beta proteins | Trypsin-like serine proteases | Trypsin-like serine proteases | Viral proteases | Viral capsid protein | (Sindbis virus ) [TaxId: 11034 ], | SCOPe (2.08) |
R | d1z8yr1 | All beta proteins | Trypsin-like serine proteases | Trypsin-like serine proteases | Viral proteases | Viral capsid protein | (Sindbis virus ) [TaxId: 11034 ], | SCOPe (2.08) |
S | d1z8ys1 | All beta proteins | Trypsin-like serine proteases | Trypsin-like serine proteases | Viral proteases | Viral capsid protein | (Sindbis virus ) [TaxId: 11034 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
T | SCOP2B Superfamily | Trypsin-like serine proteases | 8071561 | 3000114 | SCOP2B (2022-06-29) |
Q | SCOP2B Superfamily | Trypsin-like serine proteases | 8071561 | 3000114 | SCOP2B (2022-06-29) |
R | SCOP2B Superfamily | Trypsin-like serine proteases | 8071561 | 3000114 | SCOP2B (2022-06-29) |
S | SCOP2B Superfamily | Trypsin-like serine proteases | 8071561 | 3000114 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Alpha_E1_glycop_1st | e1z8yA1 | A: beta complex topology | X: Viral glycoprotein, central and dimerisation domains-like | H: Viral glycoprotein, central and dimerisation domains (From Topology) | T: Viral glycoprotein, central and dimerisation domains | F: Alpha_E1_glycop_1st | ECOD (1.6) |
C | Alpha_E1_glycop_1st | e1z8yC1 | A: beta complex topology | X: Viral glycoprotein, central and dimerisation domains-like | H: Viral glycoprotein, central and dimerisation domains (From Topology) | T: Viral glycoprotein, central and dimerisation domains | F: Alpha_E1_glycop_1st | ECOD (1.6) |
E | Alpha_E1_glycop_1st | e1z8yE1 | A: beta complex topology | X: Viral glycoprotein, central and dimerisation domains-like | H: Viral glycoprotein, central and dimerisation domains (From Topology) | T: Viral glycoprotein, central and dimerisation domains | F: Alpha_E1_glycop_1st | ECOD (1.6) |
G | Alpha_E1_glycop_1st | e1z8yG1 | A: beta complex topology | X: Viral glycoprotein, central and dimerisation domains-like | H: Viral glycoprotein, central and dimerisation domains (From Topology) | T: Viral glycoprotein, central and dimerisation domains | F: Alpha_E1_glycop_1st | ECOD (1.6) |
B | Alpha_E1_glycop_2nd | e1z8yB1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Alpha_E1_glycop_2nd | ECOD (1.6) |
D | Alpha_E1_glycop_2nd | e1z8yD1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Alpha_E1_glycop_2nd | ECOD (1.6) |
F | Alpha_E1_glycop_2nd | e1z8yF1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Alpha_E1_glycop_2nd | ECOD (1.6) |
H | Alpha_E1_glycop_2nd | e1z8yH1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Alpha_E1_glycop_2nd | ECOD (1.6) |
T | Peptidase_S3 | e1z8yT1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: Peptidase_S3 | ECOD (1.6) |
Q | Peptidase_S3 | e1z8yQ1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: Peptidase_S3 | ECOD (1.6) |
R | Peptidase_S3 | e1z8yR1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: Peptidase_S3 | ECOD (1.6) |
S | Peptidase_S3 | e1z8yS1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: Peptidase_S3 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01589 | Alphavirus E1 glycoprotein (Alpha_E1_glycop) | Alphavirus E1 glycoprotein | - | Family | |
PF01589 | Alphavirus E1 glycoprotein (Alpha_E1_glycop) | Alphavirus E1 glycoprotein | - | Family | |
PF01589 | Alphavirus E1 glycoprotein (Alpha_E1_glycop) | Alphavirus E1 glycoprotein | - | Family | |
PF00943 | Alphavirus E2 glycoprotein (Alpha_E2_glycop) | Alphavirus E2 glycoprotein | - | Family | |
PF00944 | Alphavirus core protein (Peptidase_S3) | Alphavirus core protein | Also known as coat protein C and capsid protein C. This makes the literature very confusing. Alphaviruses consist of a nucleoprotein core, a lipid membrane which envelopes the core, and glycoprotein spikes protruding from the lipid membrane. | Domain |