Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
C [auth 3]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like8036553 3000918 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth 1]Rhv_5e1xyr12 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Rhv_5ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth 1]PF00073picornavirus capsid protein (Rhv)picornavirus capsid proteinCAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornavi ...CAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornaviruses. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids. They include rhinovirus (common cold) and poliovirus. Common structure is an 8-stranded beta sandwich. Variations (one or two extra strands) occur.
Domain
B [auth 2]PF00073picornavirus capsid protein (Rhv)picornavirus capsid proteinCAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornavi ...CAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornaviruses. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids. They include rhinovirus (common cold) and poliovirus. Common structure is an 8-stranded beta sandwich. Variations (one or two extra strands) occur.
Domain
C [auth 3]PF00073picornavirus capsid protein (Rhv)picornavirus capsid proteinCAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornavi ...CAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornaviruses. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids. They include rhinovirus (common cold) and poliovirus. Common structure is an 8-stranded beta sandwich. Variations (one or two extra strands) occur.
Domain
E [auth 6]PF00073picornavirus capsid protein (Rhv)picornavirus capsid proteinCAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornavi ...CAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornaviruses. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids. They include rhinovirus (common cold) and poliovirus. Common structure is an 8-stranded beta sandwich. Variations (one or two extra strands) occur.
Domain
F [auth 7]PF00073picornavirus capsid protein (Rhv)picornavirus capsid proteinCAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornavi ...CAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornaviruses. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids. They include rhinovirus (common cold) and poliovirus. Common structure is an 8-stranded beta sandwich. Variations (one or two extra strands) occur.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth 1]Genome polyprotein, Coat protein VP1
B [auth 2]Genome polyprotein, Coat protein VP2
C [auth 3]Genome polyprotein, Coat protein VP3
D [auth 5]Genome polyprotein, Coat protein VP3
E [auth 6]Genome polyprotein, Coat protein VP3
F [auth 7]Genome polyprotein, Coat protein VP2
G [auth 8]Genome polyprotein, Coat protein VP1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth 1]IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
A [auth 1]IPR002527Picornavirus 2B proteinDomain
A [auth 1]IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
A [auth 1]IPR003138Picornavirus coat protein VP4Family
A [auth 1]IPR000199Peptidase C3A/C3B, picornaviralDomain
A [auth 1]IPR001676Picornavirus capsidDomain
A [auth 1]IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
A [auth 1]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
A [auth 1]IPR000081Peptidase C3, picornavirus core protein 2ADomain
A [auth 1]IPR029053Viral coat protein subunitHomologous Superfamily
A [auth 1]IPR009003Peptidase S1, PA clanHomologous Superfamily
A [auth 1]IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
A [auth 1]IPR044067Picornavirales 3C/3C-like protease domainDomain
A [auth 1]IPR033703Picornavirus/Calicivirus coat proteinDomain
A [auth 1]IPR014838Poliovirus 3A protein-likeDomain
A [auth 1]IPR036203Poliovirus core protein 3a, soluble domainHomologous Superfamily
A [auth 1]IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
A [auth 1]IPR007094RNA-directed RNA polymerase, catalytic domainDomain
A [auth 1]IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain
B [auth 2]IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
B [auth 2]IPR002527Picornavirus 2B proteinDomain
B [auth 2]IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
B [auth 2]IPR003138Picornavirus coat protein VP4Family
B [auth 2]IPR000199Peptidase C3A/C3B, picornaviralDomain
B [auth 2]IPR001676Picornavirus capsidDomain
B [auth 2]IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
B [auth 2]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
B [auth 2]IPR000081Peptidase C3, picornavirus core protein 2ADomain
B [auth 2]IPR029053Viral coat protein subunitHomologous Superfamily
B [auth 2]IPR009003Peptidase S1, PA clanHomologous Superfamily
B [auth 2]IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
B [auth 2]IPR044067Picornavirales 3C/3C-like protease domainDomain
B [auth 2]IPR033703Picornavirus/Calicivirus coat proteinDomain
B [auth 2]IPR014838Poliovirus 3A protein-likeDomain
B [auth 2]IPR036203Poliovirus core protein 3a, soluble domainHomologous Superfamily
B [auth 2]IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
B [auth 2]IPR007094RNA-directed RNA polymerase, catalytic domainDomain
B [auth 2]IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain
C [auth 3]IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
C [auth 3]IPR002527Picornavirus 2B proteinDomain
C [auth 3]IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
C [auth 3]IPR003138Picornavirus coat protein VP4Family
C [auth 3]IPR000199Peptidase C3A/C3B, picornaviralDomain
C [auth 3]IPR001676Picornavirus capsidDomain
C [auth 3]IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
C [auth 3]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
C [auth 3]IPR000081Peptidase C3, picornavirus core protein 2ADomain
C [auth 3]IPR029053Viral coat protein subunitHomologous Superfamily
C [auth 3]IPR009003Peptidase S1, PA clanHomologous Superfamily
C [auth 3]IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
C [auth 3]IPR044067Picornavirales 3C/3C-like protease domainDomain
C [auth 3]IPR033703Picornavirus/Calicivirus coat proteinDomain
C [auth 3]IPR014838Poliovirus 3A protein-likeDomain
C [auth 3]IPR036203Poliovirus core protein 3a, soluble domainHomologous Superfamily
C [auth 3]IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
C [auth 3]IPR007094RNA-directed RNA polymerase, catalytic domainDomain
C [auth 3]IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain
D [auth 5]IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
D [auth 5]IPR002527Picornavirus 2B proteinDomain
D [auth 5]IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
D [auth 5]IPR003138Picornavirus coat protein VP4Family
D [auth 5]IPR000199Peptidase C3A/C3B, picornaviralDomain
D [auth 5]IPR001676Picornavirus capsidDomain
D [auth 5]IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
D [auth 5]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
D [auth 5]IPR000081Peptidase C3, picornavirus core protein 2ADomain
D [auth 5]IPR029053Viral coat protein subunitHomologous Superfamily
D [auth 5]IPR009003Peptidase S1, PA clanHomologous Superfamily
D [auth 5]IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
D [auth 5]IPR044067Picornavirales 3C/3C-like protease domainDomain
D [auth 5]IPR033703Picornavirus/Calicivirus coat proteinDomain
D [auth 5]IPR014838Poliovirus 3A protein-likeDomain
D [auth 5]IPR036203Poliovirus core protein 3a, soluble domainHomologous Superfamily
D [auth 5]IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
D [auth 5]IPR007094RNA-directed RNA polymerase, catalytic domainDomain
D [auth 5]IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain
E [auth 6]IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
E [auth 6]IPR002527Picornavirus 2B proteinDomain
E [auth 6]IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
E [auth 6]IPR003138Picornavirus coat protein VP4Family
E [auth 6]IPR000199Peptidase C3A/C3B, picornaviralDomain
E [auth 6]IPR001676Picornavirus capsidDomain
E [auth 6]IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
E [auth 6]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
E [auth 6]IPR000081Peptidase C3, picornavirus core protein 2ADomain
E [auth 6]IPR029053Viral coat protein subunitHomologous Superfamily
E [auth 6]IPR009003Peptidase S1, PA clanHomologous Superfamily
E [auth 6]IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
E [auth 6]IPR044067Picornavirales 3C/3C-like protease domainDomain
E [auth 6]IPR033703Picornavirus/Calicivirus coat proteinDomain
E [auth 6]IPR014838Poliovirus 3A protein-likeDomain
E [auth 6]IPR036203Poliovirus core protein 3a, soluble domainHomologous Superfamily
E [auth 6]IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
E [auth 6]IPR007094RNA-directed RNA polymerase, catalytic domainDomain
E [auth 6]IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain
F [auth 7]IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
F [auth 7]IPR002527Picornavirus 2B proteinDomain
F [auth 7]IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
F [auth 7]IPR003138Picornavirus coat protein VP4Family
F [auth 7]IPR000199Peptidase C3A/C3B, picornaviralDomain
F [auth 7]IPR001676Picornavirus capsidDomain
F [auth 7]IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
F [auth 7]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
F [auth 7]IPR000081Peptidase C3, picornavirus core protein 2ADomain
F [auth 7]IPR029053Viral coat protein subunitHomologous Superfamily
F [auth 7]IPR009003Peptidase S1, PA clanHomologous Superfamily
F [auth 7]IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
F [auth 7]IPR044067Picornavirales 3C/3C-like protease domainDomain
F [auth 7]IPR033703Picornavirus/Calicivirus coat proteinDomain
F [auth 7]IPR014838Poliovirus 3A protein-likeDomain
F [auth 7]IPR036203Poliovirus core protein 3a, soluble domainHomologous Superfamily
F [auth 7]IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
F [auth 7]IPR007094RNA-directed RNA polymerase, catalytic domainDomain
F [auth 7]IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain
G [auth 8]IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
G [auth 8]IPR002527Picornavirus 2B proteinDomain
G [auth 8]IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
G [auth 8]IPR003138Picornavirus coat protein VP4Family
G [auth 8]IPR000199Peptidase C3A/C3B, picornaviralDomain
G [auth 8]IPR001676Picornavirus capsidDomain
G [auth 8]IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
G [auth 8]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
G [auth 8]IPR000081Peptidase C3, picornavirus core protein 2ADomain
G [auth 8]IPR029053Viral coat protein subunitHomologous Superfamily
G [auth 8]IPR009003Peptidase S1, PA clanHomologous Superfamily
G [auth 8]IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
G [auth 8]IPR044067Picornavirales 3C/3C-like protease domainDomain
G [auth 8]IPR033703Picornavirus/Calicivirus coat proteinDomain
G [auth 8]IPR014838Poliovirus 3A protein-likeDomain
G [auth 8]IPR036203Poliovirus core protein 3a, soluble domainHomologous Superfamily
G [auth 8]IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
G [auth 8]IPR007094RNA-directed RNA polymerase, catalytic domainDomain
G [auth 8]IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain