1X8M
X-ray structure of pectin degrading enzyme 5-keto 4-deoxyuronate isomerase from Escherichia coli
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | RmlC-like cupins | 8033872 | 3001825 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | RmlC-like cupins | 8033872 | 3001825 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | RmlC-like cupins | 8033872 | 3001825 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | RmlC-like cupins | 8033872 | 3001825 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | RmlC-like cupins | 8033872 | 3001825 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | RmlC-like cupins | 8033872 | 3001825 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | KduI_1 | e1x8mA2 | A: beta sandwiches | X: jelly-roll | H: Double-stranded beta-helix (From Topology) | T: Double-stranded beta-helix | F: KduI_1 | ECOD (1.6) |
B | KduI_1 | e1x8mB2 | A: beta sandwiches | X: jelly-roll | H: Double-stranded beta-helix (From Topology) | T: Double-stranded beta-helix | F: KduI_1 | ECOD (1.6) |
C | KduI_1 | e1x8mC2 | A: beta sandwiches | X: jelly-roll | H: Double-stranded beta-helix (From Topology) | T: Double-stranded beta-helix | F: KduI_1 | ECOD (1.6) |
D | KduI_1 | e1x8mD2 | A: beta sandwiches | X: jelly-roll | H: Double-stranded beta-helix (From Topology) | T: Double-stranded beta-helix | F: KduI_1 | ECOD (1.6) |
E | KduI_1 | e1x8mE2 | A: beta sandwiches | X: jelly-roll | H: Double-stranded beta-helix (From Topology) | T: Double-stranded beta-helix | F: KduI_1 | ECOD (1.6) |
F | KduI_1 | e1x8mF2 | A: beta sandwiches | X: jelly-roll | H: Double-stranded beta-helix (From Topology) | T: Double-stranded beta-helix | F: KduI_1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF04962 | KduI/IolB family (KduI) | KduI/IolB family | This family includes the 5-keto 4-deoxyuronate isomerase enzyme EC:5.3.1.17 that is involved in pectin degradation. This family aldo includes bacterial Myo-inositol catabolism (IolB) proteins. The Bacillus subtilis inositol operon (iolABCDEFGHIJ) is ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR021120 | KduI/IolB isomerase | Family | |
IPR007045 | 5-keto 4-deoxyuronate isomerase | Family | |
IPR014710 | RmlC-like jelly roll fold | Homologous Superfamily | |
IPR027449 | 5-keto-4-deoxyuronate isomerase, N-terminal | Homologous Superfamily | |
IPR011051 | RmlC-like cupin domain superfamily | Homologous Superfamily |