Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
A [auth B]d1w36b1 Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases Tandem AAA-ATPase domain Exodeoxyribonuclease V beta chain (RecB), N-terminal domain (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
A [auth B]d1w36b3 Alpha and beta proteins (a/b) Restriction endonuclease-like Restriction endonuclease-like Exodeoxyribonuclease V beta chain (RecB), C-terminal domain Exodeoxyribonuclease V beta chain (RecB), C-terminal domain (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
D [auth E]d1w36e1 Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases Tandem AAA-ATPase domain Exodeoxyribonuclease V beta chain (RecB), N-terminal domain (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
D [auth E]d1w36e3 Alpha and beta proteins (a/b) Restriction endonuclease-like Restriction endonuclease-like Exodeoxyribonuclease V beta chain (RecB), C-terminal domain Exodeoxyribonuclease V beta chain (RecB), C-terminal domain (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
B [auth C]d1w36c1 Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases Tandem AAA-ATPase domain Exodeoxyribonuclease V gamma chain (RecC), N-terminal domain (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
B [auth C]d1w36c3 Alpha and beta proteins (a/b) Restriction endonuclease-like Restriction endonuclease-like Exodeoxyribonuclease V beta chain (RecC), C-terminal domain Exodeoxyribonuclease V beta chain (RecC), C-terminal domain (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
E [auth F]d1w36f1 Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases Tandem AAA-ATPase domain Exodeoxyribonuclease V gamma chain (RecC), N-terminal domain (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
E [auth F]d1w36f3 Alpha and beta proteins (a/b) Restriction endonuclease-like Restriction endonuclease-like Exodeoxyribonuclease V beta chain (RecC), C-terminal domain Exodeoxyribonuclease V beta chain (RecC), C-terminal domain (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
C [auth D]d1w36d2 Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases Tandem AAA-ATPase domain Exodeoxyribonuclease V alpha chain (RecD), C-terminal domain (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
C [auth D]d1w36d1 Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases Tandem AAA-ATPase domain Exodeoxyribonuclease V alpha chain (RecD), N-terminal domain (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
F [auth G]d1w36g2 Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases Tandem AAA-ATPase domain Exodeoxyribonuclease V alpha chain (RecD), C-terminal domain (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
F [auth G]d1w36g1 Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases Tandem AAA-ATPase domain Exodeoxyribonuclease V alpha chain (RecD), N-terminal domain (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
A [auth B]SCOP2 FamilyExodeoxyribonuclease V beta chain (RecB) C-terminal domain8030865 4003483 SCOP2 (2022-06-29)
A [auth B]SCOP2 FamilyTandem AAA-ATPase domain8030862 4000282 SCOP2 (2022-06-29)
A [auth B]SCOP2 SuperfamilyRestriction endonuclease-like8043244 3000104 SCOP2 (2022-06-29)
A [auth B]SCOP2 SuperfamilyRecA-like P-loop NTPases8043241 3002019 SCOP2 (2022-06-29)
A [auth B]SCOP2 SuperfamilyRecA-like P-loop NTPases8043242 3002019 SCOP2 (2022-06-29)
D [auth E]SCOP2B SuperfamilyRecA-like P-loop NTPases8043241 3002019 SCOP2B (2022-06-29)
D [auth E]SCOP2B SuperfamilyRestriction endonuclease-like8043244 3000104 SCOP2B (2022-06-29)
D [auth E]SCOP2B SuperfamilyRecA-like P-loop NTPases8043242 3002019 SCOP2B (2022-06-29)
B [auth C]SCOP2 FamilyExodeoxyribonuclease V beta chain (RecC) C-terminal domain8030868 4003487 SCOP2 (2022-06-29)
B [auth C]SCOP2 FamilyTandem AAA-ATPase domain8030866 4000282 SCOP2 (2022-06-29)
B [auth C]SCOP2 SuperfamilyRestriction endonuclease-like8043247 3000104 SCOP2 (2022-06-29)
B [auth C]SCOP2 SuperfamilyRecA-like P-loop NTPases8043245 3002019 SCOP2 (2022-06-29)
B [auth C]SCOP2 SuperfamilyRecA-like P-loop NTPases8043246 3002019 SCOP2 (2022-06-29)
E [auth F]SCOP2B SuperfamilyRecA-like P-loop NTPases8043245 3002019 SCOP2B (2022-06-29)
E [auth F]SCOP2B SuperfamilyRestriction endonuclease-like8043247 3000104 SCOP2B (2022-06-29)
E [auth F]SCOP2B SuperfamilyRecA-like P-loop NTPases8043246 3002019 SCOP2B (2022-06-29)
C [auth D]SCOP2 FamilyTandem AAA-ATPase domain8030869 4000282 SCOP2 (2022-06-29)
C [auth D]SCOP2 SuperfamilyRecA-like P-loop NTPases8043248 3002019 SCOP2 (2022-06-29)
C [auth D]SCOP2 SuperfamilyRecA-like P-loop NTPases8043249 3002019 SCOP2 (2022-06-29)
F [auth G]SCOP2B SuperfamilyRecA-like P-loop NTPases8043248 3002019 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth B]UvrD-helicasee1w36B1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: UvrD-helicaseECOD (1.6)
A [auth B]UvrD_Ce1w36B2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: UvrD_CECOD (1.6)
A [auth B]PDDEXK_1e1w36B3 A: a/b three-layered sandwichesX: Restriction endonuclease-likeH: Restriction endonuclease-like (From Topology)T: Restriction endonuclease-likeF: PDDEXK_1ECOD (1.6)
D [auth E]UvrD-helicasee1w36E1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: UvrD-helicaseECOD (1.6)
D [auth E]UvrD_Ce1w36E2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: UvrD_CECOD (1.6)
D [auth E]PDDEXK_1e1w36E3 A: a/b three-layered sandwichesX: Restriction endonuclease-likeH: Restriction endonuclease-like (From Topology)T: Restriction endonuclease-likeF: PDDEXK_1ECOD (1.6)
B [auth C]UvrD_Ce1w36C2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: UvrD_CECOD (1.6)
B [auth C]Exonuc_V_gammae1w36C1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Exonuc_V_gammaECOD (1.6)
B [auth C]recCe1w36C3 A: a/b three-layered sandwichesX: Restriction endonuclease-likeH: Restriction endonuclease-like (From Topology)T: Restriction endonuclease-likeF: recCECOD (1.6)
E [auth F]UvrD_Ce1w36F2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: UvrD_CECOD (1.6)
E [auth F]Exonuc_V_gammae1w36F1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Exonuc_V_gammaECOD (1.6)
E [auth F]recCe1w36F3 A: a/b three-layered sandwichesX: Restriction endonuclease-likeH: Restriction endonuclease-like (From Topology)T: Restriction endonuclease-likeF: recCECOD (1.6)
C [auth D]recDe1w36D3 A: alpha arraysX: HTHH: HTHT: wingedF: recDECOD (1.6)
C [auth D]AAA_19e1w36D4 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: AAA_19ECOD (1.6)
C [auth D]UvrD_C_2e1w36D2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: UvrD_C_2ECOD (1.6)
F [auth G]recDe1w36G3 A: alpha arraysX: HTHH: HTHT: wingedF: recDECOD (1.6)
F [auth G]AAA_19e1w36G5 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: AAA_19ECOD (1.6)
F [auth G]UvrD_C_2e1w36G4 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: UvrD_C_2ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A [auth B]3.40.50.300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolasesCATH (4.3.0)
A [auth B]1.10.3170.10 Mainly Alpha Orthogonal Bundle Recbcd, chain B, domain 2 Recbcd, chain B, domain 2CATH (4.3.0)
A [auth B]1.10.486.10 Mainly Alpha Orthogonal Bundle PCRA domain 4CATH (4.3.0)
A [auth B]3.90.320.10 Alpha Beta Alpha-Beta Complex Lambda Exonuclease Chain ACATH (4.3.0)
D [auth E]3.40.50.300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolasesCATH (4.3.0)
D [auth E]1.10.3170.10 Mainly Alpha Orthogonal Bundle Recbcd, chain B, domain 2 Recbcd, chain B, domain 2CATH (4.3.0)
D [auth E]1.10.486.10 Mainly Alpha Orthogonal Bundle PCRA domain 4CATH (4.3.0)
D [auth E]3.90.320.10 Alpha Beta Alpha-Beta Complex Lambda Exonuclease Chain ACATH (4.3.0)
B [auth C]3.40.50.10930 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold CATH (4.3.0)
B [auth C]1.10.10.160 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A CATH (4.3.0)
B [auth C]3.40.50.300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolasesCATH (4.3.0)
B [auth C]1.10.486.10 Mainly Alpha Orthogonal Bundle PCRA domain 4CATH (4.3.0)
B [auth C]1.10.10.990 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A CATH (4.3.0)
E [auth F]3.40.50.10930 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold CATH (4.3.0)
E [auth F]1.10.10.160 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A CATH (4.3.0)
E [auth F]3.40.50.300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolasesCATH (4.3.0)
E [auth F]1.10.486.10 Mainly Alpha Orthogonal Bundle PCRA domain 4CATH (4.3.0)
E [auth F]1.10.10.990 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A CATH (4.3.0)
C [auth D]1.10.10.1020 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A RecBCD complex, subunit RecD, N-terminal domainCATH (4.3.0)
C [auth D]3.40.50.300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolasesCATH (4.3.0)
F [auth G]1.10.10.1020 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A RecBCD complex, subunit RecD, N-terminal domainCATH (4.3.0)
F [auth G]3.40.50.300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolasesCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth B],
D [auth E]
PF13361UvrD-like helicase C-terminal domain (UvrD_C)UvrD-like helicase C-terminal domainThis domain is found at the C-terminus of a wide variety of helicase enzymes. This domain has a AAA-like structural fold.Domain
A [auth B],
D [auth E]
PF00580UvrD/REP helicase N-terminal domain (UvrD-helicase)UvrD/REP helicase N-terminal domainThe Rep family helicases are composed of four structural domains. The Rep family function as dimers. REP helicases catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. Swiss:P23478, Swiss:P08394 have large insertions near t ...The Rep family helicases are composed of four structural domains. The Rep family function as dimers. REP helicases catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. Swiss:P23478, Swiss:P08394 have large insertions near to the carboxy-terminus relative to other members of the family.
Domain
A [auth B],
D [auth E]
PF12705PD-(D/E)XK nuclease superfamily (PDDEXK_1)PD-(D/E)XK nuclease superfamilyMembers of this family belong to the PD-(D/E)XK nuclease superfamilyDomain
B [auth C],
E [auth F]
PF04257Exodeoxyribonuclease V, gamma subunit (Exonuc_V_gamma)Exodeoxyribonuclease V, gamma subunit- Family
B [auth C],
E [auth F]
PF17946RecC C-terminal domain (RecC_C)RecC C-terminal domainThis entry corresponds to the C-terminal domain of the RecC protein. This domain has a PD(D/E)XK like fold. Deleting this domain eliminates RecD assembly within the RecBCD complex [1].Domain
C [auth D],
F [auth G]
PF13538UvrD-like helicase C-terminal domain (UvrD_C_2)UvrD-like helicase C-terminal domainThis domain is found at the C-terminus of a wide variety of helicase enzymes. This domain has a AAA-like structural fold.Domain
C [auth D],
F [auth G]
PF21185RecBCD enzyme subunit RecD, N-terminal domain (RecD_N)RecBCD enzyme subunit RecD, N-terminal domainThis domain is found in RecBCD enzyme subunit RecD from Escherichia coli and in similar proteins mostly found in Gammaproteobacteria. RecD is a 5'-3' helicase that comprises three domains. This entry represents the N-terminal domain of RecD, which fo ...This domain is found in RecBCD enzyme subunit RecD from Escherichia coli and in similar proteins mostly found in Gammaproteobacteria. RecD is a 5'-3' helicase that comprises three domains. This entry represents the N-terminal domain of RecD, which forms the principal interface between RecD and domain 2B of RecC and leads to the conformational change in RecD that has significant effects on the conformation of the RecC subunit [1-4].
Domain
C [auth D],
F [auth G]
PF13245AAA domain (AAA_19)AAA domain- Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth B],
D [auth E]
EXODEOXYRIBONUCLEASE V BETA CHAIN
B [auth C],
E [auth F]
EXODEOXYRIBONUCLEASE V GAMMA CHAIN
C [auth D],
F [auth G]
EXODEOXYRIBONUCLEASE V ALPHA CHAIN
G [auth Y],
H [auth Z]
DNA HAIRPIN---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth B],
D [auth E]
IPR014017UvrD-like DNA helicase, C-terminalDomain
A [auth B],
D [auth E]
IPR011335Restriction endonuclease type II-likeHomologous Superfamily
A [auth B],
D [auth E]
IPR038726PD-(D/E)XK endonuclease-like domain, AddAB-typeDomain
A [auth B],
D [auth E]
IPR004586RecBCD enzyme subunit RecBFamily
A [auth B],
D [auth E]
IPR011604PD-(D/E)XK endonuclease-like domain superfamilyHomologous Superfamily
A [auth B],
D [auth E]
IPR014016UvrD-like helicase, ATP-binding domainDomain
A [auth B],
D [auth E]
IPR000212DNA helicase, UvrD/REP typeFamily
A [auth B],
D [auth E]
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
B [auth C],
E [auth F]
IPR011335Restriction endonuclease type II-likeHomologous Superfamily
B [auth C],
E [auth F]
IPR006697RecBCD enzyme subunit RecCFamily
B [auth C],
E [auth F]
IPR041500RecC, C-terminalDomain
B [auth C],
E [auth F]
IPR013986DExx box DNA helicase domain superfamilyHomologous Superfamily
B [auth C],
E [auth F]
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
C [auth D],
F [auth G]
IPR006344RecBCD enzyme subunit RecDFamily
C [auth D],
F [auth G]
IPR049550RecBCD enzyme subunit RecD, N-terminal domainDomain
C [auth D],
F [auth G]
IPR003593AAA+ ATPase domainDomain
C [auth D],
F [auth G]
IPR027785UvrD-like helicase C-terminal domainDomain
C [auth D],
F [auth G]
IPR041851RecBCD enzyme subunit RecD, N-terminal domain superfamilyHomologous Superfamily
C [auth D],
F [auth G]
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily