1VPH

CRYSTAL STRUCTURE OF a YbjQ-like protein of unknown function (SSO2532) FROM SULFOLOBUS SOLFATARICUS P2 AT 1.76 A RESOLUTION

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1vpha1	Alpha and beta proteins (a+b)	YjbQ-like	YjbQ-like	YjbQ-like	Hypothetical protein SSO2532	(Saccharolobus solfataricus P2 ) [TaxId: 273057 ],	SCOPe (2.08)
A	d1vpha2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Saccharolobus solfataricus P2 ) [TaxId: 273057 ],	SCOPe (2.08)
B	d1vphb_	Alpha and beta proteins (a+b)	YjbQ-like	YjbQ-like	YjbQ-like	Hypothetical protein SSO2532	(Saccharolobus solfataricus P2 ) [TaxId: 273057 ],	SCOPe (2.08)
C	d1vphc1	Alpha and beta proteins (a+b)	YjbQ-like	YjbQ-like	YjbQ-like	Hypothetical protein SSO2532	(Saccharolobus solfataricus P2 ) [TaxId: 273057 ],	SCOPe (2.08)
C	d1vphc2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Saccharolobus solfataricus P2 ) [TaxId: 273057 ],	SCOPe (2.08)
D	d1vphd1	Alpha and beta proteins (a+b)	YjbQ-like	YjbQ-like	YjbQ-like	Hypothetical protein SSO2532	(Saccharolobus solfataricus P2 ) [TaxId: 273057 ],	SCOPe (2.08)
D	d1vphd2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Saccharolobus solfataricus P2 ) [TaxId: 273057 ],	SCOPe (2.08)
E	d1vphe1	Alpha and beta proteins (a+b)	YjbQ-like	YjbQ-like	YjbQ-like	Hypothetical protein SSO2532	(Saccharolobus solfataricus P2 ) [TaxId: 273057 ],	SCOPe (2.08)
E	d1vphe2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Saccharolobus solfataricus P2 ) [TaxId: 273057 ],	SCOPe (2.08)
F	d1vphf1	Alpha and beta proteins (a+b)	YjbQ-like	YjbQ-like	YjbQ-like	Hypothetical protein SSO2532	(Saccharolobus solfataricus P2 ) [TaxId: 273057 ],	SCOPe (2.08)
F	d1vphf2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Saccharolobus solfataricus P2 ) [TaxId: 273057 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	YjbQ-like	8030822	4002602	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	YjbQ-like	8043201	3001472	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	YjbQ-like	8043201	3001472	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	YjbQ-like	8043201	3001472	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	YjbQ-like	8043201	3001472	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	YjbQ-like	8043201	3001472	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	YjbQ-like	8043201	3001472	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	UPF0047	e1vphA1	A: a+b two layers	X: YjbQ-like (Pfam 01894) (From Topology)	H: YjbQ-like (Pfam 01894) (From Topology)	T: YjbQ-like (Pfam 01894)	F: UPF0047	ECOD (1.6)
B	UPF0047	e1vphB1	A: a+b two layers	X: YjbQ-like (Pfam 01894) (From Topology)	H: YjbQ-like (Pfam 01894) (From Topology)	T: YjbQ-like (Pfam 01894)	F: UPF0047	ECOD (1.6)
C	UPF0047	e1vphC1	A: a+b two layers	X: YjbQ-like (Pfam 01894) (From Topology)	H: YjbQ-like (Pfam 01894) (From Topology)	T: YjbQ-like (Pfam 01894)	F: UPF0047	ECOD (1.6)
D	UPF0047	e1vphD1	A: a+b two layers	X: YjbQ-like (Pfam 01894) (From Topology)	H: YjbQ-like (Pfam 01894) (From Topology)	T: YjbQ-like (Pfam 01894)	F: UPF0047	ECOD (1.6)
E	UPF0047	e1vphE1	A: a+b two layers	X: YjbQ-like (Pfam 01894) (From Topology)	H: YjbQ-like (Pfam 01894) (From Topology)	T: YjbQ-like (Pfam 01894)	F: UPF0047	ECOD (1.6)
F	UPF0047	e1vphF1	A: a+b two layers	X: YjbQ-like (Pfam 01894) (From Topology)	H: YjbQ-like (Pfam 01894) (From Topology)	T: YjbQ-like (Pfam 01894)	F: UPF0047	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.60.120.460	Mainly Beta	Sandwich	Jelly Rolls	YjbQ-like	CATH (4.3.0)
B	2.60.120.460	Mainly Beta	Sandwich	Jelly Rolls	YjbQ-like	CATH (4.3.0)
C	2.60.120.460	Mainly Beta	Sandwich	Jelly Rolls	YjbQ-like	CATH (4.3.0)
D	2.60.120.460	Mainly Beta	Sandwich	Jelly Rolls	YjbQ-like	CATH (4.3.0)
E	2.60.120.460	Mainly Beta	Sandwich	Jelly Rolls	YjbQ-like	CATH (4.3.0)
F	2.60.120.460	Mainly Beta	Sandwich	Jelly Rolls	YjbQ-like	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF01894	Uncharacterised protein family UPF0047 (UPF0047)	Uncharacterised protein family UPF0047	-	Family

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR035917	YjbQ-like superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR001602	UPF0047 protein YjbQ-like	Family

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.