Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2 FamilyPutative modulator of DNA gyrase PmbA/TldD8030820 4002916 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyPutative modulator of DNA gyrase PmbA/TldD8043199 3001895 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APmbA_TldD_3rde1vpbA1 A: beta barrelsX: barrel domain in putative modulator of DNA gyrase, PmbA/TldD (From Topology)H: barrel domain in putative modulator of DNA gyrase, PmbA/TldD (From Topology)T: barrel domain in putative modulator of DNA gyrase, PmbA/TldDF: PmbA_TldD_3rdECOD (1.6)
APmbA_TldD_1ste1vpbA2 A: a+b two layersX: a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) (From Topology)H: a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) (From Topology)T: a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523)F: PmbA_TldD_1stECOD (1.6)
APmbA_TldD_2nde1vpbA3 A: a+b two layersX: a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) (From Topology)H: a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) (From Topology)T: a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523)F: PmbA_TldD_2ndECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.30.2290.10 Alpha Beta 2-Layer Sandwich PmbA/TldD fold PmbA/TldD superfamilyCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF19289PmbA/TldA metallopeptidase C-terminal domain (PmbA_TldD_3rd)PmbA/TldA metallopeptidase C-terminal domainThis entry represents a group of metalloproteases. The tertiary structure of the Escherichia coli TdlD/TdlE complex has been solved, and shows that the TdlD subunit is the active peptidase, binding a single zinc ion at an HEXXXH motif in which the gl ...This entry represents a group of metalloproteases. The tertiary structure of the Escherichia coli TdlD/TdlE complex has been solved, and shows that the TdlD subunit is the active peptidase, binding a single zinc ion at an HEXXXH motif in which the glutamic acid is a substrate-binding residue and the two histidines are zinc ligands. The third zinc ligand is a cysteine, C-terminal to the HEXXXH motif. The TldE (also known as PmbA) by itself has no catalytic activity, does not bind zinc, and does not carry the HEXXXH motif [1]. TldD and TldE were originally identified as regulators of DNA gyrase. Later, they are shown to be metalloproteases involved in CcdA degradation [2-3].
Domain
PF19290PmbA/TldA metallopeptidase central domain (PmbA_TldD_2nd)PmbA/TldA metallopeptidase central domainThis entry represents a group of metalloproteases. The tertiary structure of the Escherichia coli TdlD/TdlE complex has been solved, and shows that the TdlD subunit is the active peptidase, binding a single zinc ion at an HEXXXH motif in which the gl ...This entry represents a group of metalloproteases. The tertiary structure of the Escherichia coli TdlD/TdlE complex has been solved, and shows that the TdlD subunit is the active peptidase, binding a single zinc ion at an HEXXXH motif in which the glutamic acid is a substrate-binding residue and the two histidines are zinc ligands. The third zinc ligand is a cysteine, C-terminal to the HEXXXH motif. The TldE (also known as PmbA) by itself has no catalytic activity, does not bind zinc, and does not carry the HEXXXH motif [1]. TldD and TldE were originally identified as regulators of DNA gyrase. Later, they are shown to be metalloproteases involved in CcdA degradation [2-3].
Domain
PF01523PmbA/TldA metallopeptidase domain 1 (PmbA_TldD_1st)PmbA/TldA metallopeptidase domain 1This entry represents a group of metalloproteases. The tertiary structure of the Escherichia coli TdlD/TdlE complex has been solved, and shows that the TdlD subunit is the active peptidase, binding a single zinc ion at an HEXXXH motif in which the gl ...This entry represents a group of metalloproteases. The tertiary structure of the Escherichia coli TdlD/TdlE complex has been solved, and shows that the TdlD subunit is the active peptidase, binding a single zinc ion at an HEXXXH motif in which the glutamic acid is a substrate-binding residue and the two histidines are zinc ligands. The third zinc ligand is a cysteine, C-terminal to the HEXXXH motif. The TldE (also known as PmbA) by itself has no catalytic activity, does not bind zinc, and does not carry the HEXXXH motif [1]. TldD and TldE were originally identified as regulators of DNA gyrase. Later, they are shown to be metalloproteases involved in CcdA degradation [2-3].
Domain