1TF6
CO-CRYSTAL STRUCTURE OF XENOPUS TFIIIA ZINC FINGER DOMAIN BOUND TO THE 5S RIBOSOMAL RNA GENE INTERNAL CONTROL REGION
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
F [auth D] | d1tf6d1 | Small proteins | beta-beta-alpha zinc fingers | beta-beta-alpha zinc fingers | Classic zinc finger, C2H2 | Transcription factor IIIA, TFIIIA | African clawed frog (Xenopus laevis ) [TaxId: 8355 ], | SCOPe (2.08) |
E [auth A] | d1tf6a1 | Small proteins | beta-beta-alpha zinc fingers | beta-beta-alpha zinc fingers | Classic zinc finger, C2H2 | Transcription factor IIIA, TFIIIA | African clawed frog (Xenopus laevis ) [TaxId: 8355 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
F [auth D] | SCOP2B Superfamily | beta-beta-alpha zinc fingers | 8034630 | 3001077 | SCOP2B (2022-06-29) |
F [auth D] | SCOP2B Superfamily | beta-beta-alpha zinc fingers | 8034629 | 3001077 | SCOP2B (2022-06-29) |
F [auth D] | SCOP2B Superfamily | beta-beta-alpha zinc fingers | 8034631 | 3001077 | SCOP2B (2022-06-29) |
E [auth A] | SCOP2B Superfamily | beta-beta-alpha zinc fingers | 8034630 | 3001077 | SCOP2B (2022-06-29) |
E [auth A] | SCOP2B Superfamily | beta-beta-alpha zinc fingers | 8034631 | 3001077 | SCOP2B (2022-06-29) |
E [auth A] | SCOP2B Superfamily | beta-beta-alpha zinc fingers | 8034629 | 3001077 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
F [auth D] | zf-C2H2_18 | e1tf6D5 | A: few secondary structure elements | X: beta-beta-alpha zinc fingers | H: beta-beta-alpha zinc fingers (From Topology) | T: beta-beta-alpha zinc fingers | F: zf-C2H2_18 | ECOD (1.6) |
F [auth D] | zf-C2H2_17 | e1tf6D3 | A: few secondary structure elements | X: beta-beta-alpha zinc fingers | H: beta-beta-alpha zinc fingers (From Topology) | T: beta-beta-alpha zinc fingers | F: zf-C2H2_17 | ECOD (1.6) |
F [auth D] | zf-C2H2_13,zf-H2C2_2_like | e1tf6D1 | A: few secondary structure elements | X: beta-beta-alpha zinc fingers | H: beta-beta-alpha zinc fingers (From Topology) | T: beta-beta-alpha zinc fingers | F: zf-C2H2_13,zf-H2C2_2_like | ECOD (1.6) |
E [auth A] | zf-C2H2_18 | e1tf6A1 | A: few secondary structure elements | X: beta-beta-alpha zinc fingers | H: beta-beta-alpha zinc fingers (From Topology) | T: beta-beta-alpha zinc fingers | F: zf-C2H2_18 | ECOD (1.6) |
E [auth A] | zf-C2H2_17 | e1tf6A3 | A: few secondary structure elements | X: beta-beta-alpha zinc fingers | H: beta-beta-alpha zinc fingers (From Topology) | T: beta-beta-alpha zinc fingers | F: zf-C2H2_17 | ECOD (1.6) |
E [auth A] | zf-C2H2_13,zf-H2C2_2_like | e1tf6A5 | A: few secondary structure elements | X: beta-beta-alpha zinc fingers | H: beta-beta-alpha zinc fingers (From Topology) | T: beta-beta-alpha zinc fingers | F: zf-C2H2_13,zf-H2C2_2_like | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
F [auth D] | 3.30.160.60 | Alpha Beta | 2-Layer Sandwich | Double Stranded RNA Binding Domain | Classic Zinc Finger | CATH (4.3.0) |
E [auth A] | 3.30.160.60 | Alpha Beta | 2-Layer Sandwich | Double Stranded RNA Binding Domain | Classic Zinc Finger | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
E [auth A], F [auth D] | PF00096 | Zinc finger, C2H2 type (zf-C2H2) | Zinc finger, C2H2 type | The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, an ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
A [auth B], C [auth E] | DNA (5'-D(*AP*CP*GP*GP*GP*CP*CP*TP*GP*GP*TP*TP*AP*GP*TP*AP*C P*CP*TP*GP*GP*AP* TP*GP*GP*GP*AP*GP*AP*CP*C)-3') | - | - | - |
B [auth C], D [auth F] | DNA (5'-D(*TP*GP*GP*TP*CP*TP*CP*CP*CP*AP*TP*CP*CP*AP*GP*GP*T P*AP*CP*TP*AP*AP* CP*CP*AP*GP*GP*CP*CP*CP*G)-3') | - | - | - |
E [auth A], F [auth D] | PROTEIN (TRANSCRIPTION FACTOR IIIA) |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
E [auth A], F [auth D] | IPR013087 | Zinc finger C2H2-type | Domain |
E [auth A], F [auth D] | IPR036236 | Zinc finger C2H2 superfamily | Homologous Superfamily |