Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad1rvva_ Alpha and beta proteins (a/b) Lumazine synthase Lumazine synthase Lumazine synthase Lumazine synthase (Bacillus subtilis ) [TaxId: 1423 ], SCOPe (2.08)
AA [auth 1]d1rvv1_ Alpha and beta proteins (a/b) Lumazine synthase Lumazine synthase Lumazine synthase Lumazine synthase (Bacillus subtilis ) [TaxId: 1423 ], SCOPe (2.08)
Bd1rvvb_ Alpha and beta proteins (a/b) Lumazine synthase Lumazine synthase Lumazine synthase Lumazine synthase (Bacillus subtilis ) [TaxId: 1423 ], SCOPe (2.08)
BA [auth 2]d1rvv2_ Alpha and beta proteins (a/b) Lumazine synthase Lumazine synthase Lumazine synthase Lumazine synthase (Bacillus subtilis ) [TaxId: 1423 ], SCOPe (2.08)
Cd1rvvc_ Alpha and beta proteins (a/b) Lumazine synthase Lumazine synthase Lumazine synthase Lumazine synthase (Bacillus subtilis ) [TaxId: 1423 ], SCOPe (2.08)
CA [auth 3]d1rvv3_ Alpha and beta proteins (a/b) Lumazine synthase Lumazine synthase Lumazine synthase Lumazine synthase (Bacillus subtilis ) [TaxId: 1423 ], SCOPe (2.08)
DA [auth 4]d1rvv4_ Alpha and beta proteins (a/b) Lumazine synthase Lumazine synthase Lumazine synthase Lumazine synthase (Bacillus subtilis ) [TaxId: 1423 ], SCOPe (2.08)
Ed1rvve_ Alpha and beta proteins (a/b) Lumazine synthase Lumazine synthase Lumazine synthase Lumazine synthase (Bacillus subtilis ) [TaxId: 1423 ], SCOPe (2.08)
Fd1rvvf_ Alpha and beta proteins (a/b) Lumazine synthase Lumazine synthase Lumazine synthase Lumazine synthase (Bacillus subtilis ) [TaxId: 1423 ], SCOPe (2.08)
Gd1rvvg_ Alpha and beta proteins (a/b) Lumazine synthase Lumazine synthase Lumazine synthase Lumazine synthase (Bacillus subtilis ) [TaxId: 1423 ], SCOPe (2.08)
Hd1rvvh_ Alpha and beta proteins (a/b) Lumazine synthase Lumazine synthase Lumazine synthase Lumazine synthase (Bacillus subtilis ) [TaxId: 1423 ], SCOPe (2.08)
Id1rvvi_ Alpha and beta proteins (a/b) Lumazine synthase Lumazine synthase Lumazine synthase Lumazine synthase (Bacillus subtilis ) [TaxId: 1423 ], SCOPe (2.08)
Jd1rvvj_ Alpha and beta proteins (a/b) Lumazine synthase Lumazine synthase Lumazine synthase Lumazine synthase (Bacillus subtilis ) [TaxId: 1423 ], SCOPe (2.08)
Kd1rvvk_ Alpha and beta proteins (a/b) Lumazine synthase Lumazine synthase Lumazine synthase Lumazine synthase (Bacillus subtilis ) [TaxId: 1423 ], SCOPe (2.08)
Ld1rvvl_ Alpha and beta proteins (a/b) Lumazine synthase Lumazine synthase Lumazine synthase Lumazine synthase (Bacillus subtilis ) [TaxId: 1423 ], SCOPe (2.08)
Md1rvvm_ Alpha and beta proteins (a/b) Lumazine synthase Lumazine synthase Lumazine synthase Lumazine synthase (Bacillus subtilis ) [TaxId: 1423 ], SCOPe (2.08)
Od1rvvo_ Alpha and beta proteins (a/b) Lumazine synthase Lumazine synthase Lumazine synthase Lumazine synthase (Bacillus subtilis ) [TaxId: 1423 ], SCOPe (2.08)
Pd1rvvp_ Alpha and beta proteins (a/b) Lumazine synthase Lumazine synthase Lumazine synthase Lumazine synthase (Bacillus subtilis ) [TaxId: 1423 ], SCOPe (2.08)
Qd1rvvq_ Alpha and beta proteins (a/b) Lumazine synthase Lumazine synthase Lumazine synthase Lumazine synthase (Bacillus subtilis ) [TaxId: 1423 ], SCOPe (2.08)
Rd1rvvr_ Alpha and beta proteins (a/b) Lumazine synthase Lumazine synthase Lumazine synthase Lumazine synthase (Bacillus subtilis ) [TaxId: 1423 ], SCOPe (2.08)
Sd1rvvs_ Alpha and beta proteins (a/b) Lumazine synthase Lumazine synthase Lumazine synthase Lumazine synthase (Bacillus subtilis ) [TaxId: 1423 ], SCOPe (2.08)
Td1rvvt_ Alpha and beta proteins (a/b) Lumazine synthase Lumazine synthase Lumazine synthase Lumazine synthase (Bacillus subtilis ) [TaxId: 1423 ], SCOPe (2.08)
Ud1rvvu_ Alpha and beta proteins (a/b) Lumazine synthase Lumazine synthase Lumazine synthase Lumazine synthase (Bacillus subtilis ) [TaxId: 1423 ], SCOPe (2.08)
Vd1rvvv_ Alpha and beta proteins (a/b) Lumazine synthase Lumazine synthase Lumazine synthase Lumazine synthase (Bacillus subtilis ) [TaxId: 1423 ], SCOPe (2.08)
Wd1rvvw_ Alpha and beta proteins (a/b) Lumazine synthase Lumazine synthase Lumazine synthase Lumazine synthase (Bacillus subtilis ) [TaxId: 1423 ], SCOPe (2.08)
Xd1rvvx_ Alpha and beta proteins (a/b) Lumazine synthase Lumazine synthase Lumazine synthase Lumazine synthase (Bacillus subtilis ) [TaxId: 1423 ], SCOPe (2.08)
Yd1rvvy_ Alpha and beta proteins (a/b) Lumazine synthase Lumazine synthase Lumazine synthase Lumazine synthase (Bacillus subtilis ) [TaxId: 1423 ], SCOPe (2.08)
Zd1rvvz_ Alpha and beta proteins (a/b) Lumazine synthase Lumazine synthase Lumazine synthase Lumazine synthase (Bacillus subtilis ) [TaxId: 1423 ], SCOPe (2.08)
Dd1rvvd_ Alpha and beta proteins (a/b) Lumazine synthase Lumazine synthase Lumazine synthase Lumazine synthase (Bacillus subtilis ) [TaxId: 1423 ], SCOPe (2.08)
Nd1rvvn_ Alpha and beta proteins (a/b) Lumazine synthase Lumazine synthase Lumazine synthase Lumazine synthase (Bacillus subtilis ) [TaxId: 1423 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2 FamilyLumazine synthase8031635 4003586 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyLumazine synthase8044013 3001085 SCOP2 (2022-06-29)
AA [auth 1]SCOP2B SuperfamilyLumazine synthase8044013 3001085 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyLumazine synthase8044013 3001085 SCOP2B (2022-06-29)
BA [auth 2]SCOP2B SuperfamilyLumazine synthase8044013 3001085 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyLumazine synthase8044013 3001085 SCOP2B (2022-06-29)
CA [auth 3]SCOP2B SuperfamilyLumazine synthase8044013 3001085 SCOP2B (2022-06-29)
DA [auth 4]SCOP2B SuperfamilyLumazine synthase8044013 3001085 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyLumazine synthase8044013 3001085 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyLumazine synthase8044013 3001085 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyLumazine synthase8044013 3001085 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyLumazine synthase8044013 3001085 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyLumazine synthase8044013 3001085 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyLumazine synthase8044013 3001085 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyLumazine synthase8044013 3001085 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyLumazine synthase8044013 3001085 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyLumazine synthase8044013 3001085 SCOP2B (2022-06-29)
OSCOP2B SuperfamilyLumazine synthase8044013 3001085 SCOP2B (2022-06-29)
PSCOP2B SuperfamilyLumazine synthase8044013 3001085 SCOP2B (2022-06-29)
QSCOP2B SuperfamilyLumazine synthase8044013 3001085 SCOP2B (2022-06-29)
RSCOP2B SuperfamilyLumazine synthase8044013 3001085 SCOP2B (2022-06-29)
SSCOP2B SuperfamilyLumazine synthase8044013 3001085 SCOP2B (2022-06-29)
TSCOP2B SuperfamilyLumazine synthase8044013 3001085 SCOP2B (2022-06-29)
USCOP2B SuperfamilyLumazine synthase8044013 3001085 SCOP2B (2022-06-29)
VSCOP2B SuperfamilyLumazine synthase8044013 3001085 SCOP2B (2022-06-29)
WSCOP2B SuperfamilyLumazine synthase8044013 3001085 SCOP2B (2022-06-29)
XSCOP2B SuperfamilyLumazine synthase8044013 3001085 SCOP2B (2022-06-29)
YSCOP2B SuperfamilyLumazine synthase8044013 3001085 SCOP2B (2022-06-29)
ZSCOP2B SuperfamilyLumazine synthase8044013 3001085 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyLumazine synthase8044013 3001085 SCOP2B (2022-06-29)
NSCOP2B SuperfamilyLumazine synthase8044013 3001085 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF00885e1rvvA1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: Lumazine synthaseF: PF00885ECOD (1.6)
AA [auth 1]PF00885e1rvv11 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: Lumazine synthaseF: PF00885ECOD (1.6)
BPF00885e1rvvB1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: Lumazine synthaseF: PF00885ECOD (1.6)
BA [auth 2]PF00885e1rvv21 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: Lumazine synthaseF: PF00885ECOD (1.6)
CPF00885e1rvvC1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: Lumazine synthaseF: PF00885ECOD (1.6)
CA [auth 3]PF00885e1rvv31 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: Lumazine synthaseF: PF00885ECOD (1.6)
DA [auth 4]PF00885e1rvv41 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: Lumazine synthaseF: PF00885ECOD (1.6)
EPF00885e1rvvE1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: Lumazine synthaseF: PF00885ECOD (1.6)
FPF00885e1rvvF1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: Lumazine synthaseF: PF00885ECOD (1.6)
GPF00885e1rvvG1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: Lumazine synthaseF: PF00885ECOD (1.6)
HPF00885e1rvvH1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: Lumazine synthaseF: PF00885ECOD (1.6)
IPF00885e1rvvI1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: Lumazine synthaseF: PF00885ECOD (1.6)
JPF00885e1rvvJ1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: Lumazine synthaseF: PF00885ECOD (1.6)
KPF00885e1rvvK1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: Lumazine synthaseF: PF00885ECOD (1.6)
LPF00885e1rvvL1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: Lumazine synthaseF: PF00885ECOD (1.6)
MPF00885e1rvvM1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: Lumazine synthaseF: PF00885ECOD (1.6)
OPF00885e1rvvO1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: Lumazine synthaseF: PF00885ECOD (1.6)
PPF00885e1rvvP1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: Lumazine synthaseF: PF00885ECOD (1.6)
QPF00885e1rvvQ1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: Lumazine synthaseF: PF00885ECOD (1.6)
RPF00885e1rvvR1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: Lumazine synthaseF: PF00885ECOD (1.6)
SPF00885e1rvvS1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: Lumazine synthaseF: PF00885ECOD (1.6)
TPF00885e1rvvT1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: Lumazine synthaseF: PF00885ECOD (1.6)
UPF00885e1rvvU1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: Lumazine synthaseF: PF00885ECOD (1.6)
VPF00885e1rvvV1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: Lumazine synthaseF: PF00885ECOD (1.6)
WPF00885e1rvvW1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: Lumazine synthaseF: PF00885ECOD (1.6)
XPF00885e1rvvX1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: Lumazine synthaseF: PF00885ECOD (1.6)
YPF00885e1rvvY1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: Lumazine synthaseF: PF00885ECOD (1.6)
ZPF00885e1rvvZ1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: Lumazine synthaseF: PF00885ECOD (1.6)
DPF00885e1rvvD1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: Lumazine synthaseF: PF00885ECOD (1.6)
NPF00885e1rvvN1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: Lumazine synthaseF: PF00885ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.40.50.960 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Lumazine/riboflavin synthaseCATH (4.3.0)
AA [auth 1]3.40.50.960 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Lumazine/riboflavin synthaseCATH (4.3.0)
B3.40.50.960 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Lumazine/riboflavin synthaseCATH (4.3.0)
BA [auth 2]3.40.50.960 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Lumazine/riboflavin synthaseCATH (4.3.0)
C3.40.50.960 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Lumazine/riboflavin synthaseCATH (4.3.0)
CA [auth 3]3.40.50.960 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Lumazine/riboflavin synthaseCATH (4.3.0)
DA [auth 4]3.40.50.960 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Lumazine/riboflavin synthaseCATH (4.3.0)
E3.40.50.960 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Lumazine/riboflavin synthaseCATH (4.3.0)
F3.40.50.960 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Lumazine/riboflavin synthaseCATH (4.3.0)
G3.40.50.960 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Lumazine/riboflavin synthaseCATH (4.3.0)
H3.40.50.960 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Lumazine/riboflavin synthaseCATH (4.3.0)
I3.40.50.960 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Lumazine/riboflavin synthaseCATH (4.3.0)
J3.40.50.960 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Lumazine/riboflavin synthaseCATH (4.3.0)
K3.40.50.960 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Lumazine/riboflavin synthaseCATH (4.3.0)
L3.40.50.960 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Lumazine/riboflavin synthaseCATH (4.3.0)
M3.40.50.960 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Lumazine/riboflavin synthaseCATH (4.3.0)
O3.40.50.960 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Lumazine/riboflavin synthaseCATH (4.3.0)
P3.40.50.960 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Lumazine/riboflavin synthaseCATH (4.3.0)
Q3.40.50.960 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Lumazine/riboflavin synthaseCATH (4.3.0)
R3.40.50.960 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Lumazine/riboflavin synthaseCATH (4.3.0)
S3.40.50.960 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Lumazine/riboflavin synthaseCATH (4.3.0)
T3.40.50.960 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Lumazine/riboflavin synthaseCATH (4.3.0)
U3.40.50.960 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Lumazine/riboflavin synthaseCATH (4.3.0)
V3.40.50.960 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Lumazine/riboflavin synthaseCATH (4.3.0)
W3.40.50.960 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Lumazine/riboflavin synthaseCATH (4.3.0)
X3.40.50.960 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Lumazine/riboflavin synthaseCATH (4.3.0)
Y3.40.50.960 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Lumazine/riboflavin synthaseCATH (4.3.0)
Z3.40.50.960 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Lumazine/riboflavin synthaseCATH (4.3.0)
D3.40.50.960 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Lumazine/riboflavin synthaseCATH (4.3.0)
N3.40.50.960 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Lumazine/riboflavin synthaseCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF008856,7-dimethyl-8-ribityllumazine synthase (DMRL_synthase)6,7-dimethyl-8-ribityllumazine synthaseThis family includes the beta chain of 6,7-dimethyl-8- ribityllumazine synthase EC:2.5.1.9, an enzyme involved in riboflavin biosynthesis. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function f ...This family includes the beta chain of 6,7-dimethyl-8- ribityllumazine synthase EC:2.5.1.9, an enzyme involved in riboflavin biosynthesis. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function for example Swiss:O28856. The family contains a number of different subsets including a family of proteins comprising archaeal lumazine and riboflavin synthases, type I lumazine synthases, and the eubacterial type II lumazine synthases [1]. It has been established that lumazine synthase catalyses the penultimate step in the biosynthesis of riboflavin in plants and microorganisms. The type I lumazine synthases area active in pentameric or icosahedral quaternary assemblies, whereas the type II are decameric [2]. Brucella, a bacterial genus that causes brucellosis, and other Rhizobiales have an atypical riboflavin metabolic pathway. Brucella spp code for both a type-I and a type-II lumazine synthase, and it has been shown that at least one of these two has to be present in order for Brucella to be viable, showing that in the case of Brucella flavin metabolism is implicated in bacterial virulence [3].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
RIBOFLAVIN SYNTHASE

Structure Motif Annotation: Mechanism and Catalytic Site Atlas M-CSA Database Homepage

ChainsEnzyme NameDescriptionCatalytic Residues
6,7-dimethyl-8-ribityllumazine synthase  M-CSA #909

Riboflavin is biosynthesised in plants, fungi and certain microorganisms; as animals lack the necessary enzymes to produce this vitamin, they acquire it from dietary sources. The penultimate step in the biosynthesis of riboflavin (vitamin B2) involves the condensation of 3,4-dihydroxy-2-butanone 4-phosphate with 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione, which is catalysed by 6,7-dimethyl-8-ribityllumazine synthase (lumazine synthase).

Defined by 1 residue: HIS:A-88
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