1RC6
Crystal structure of protein Ylba from E. coli, Pfam DUF861
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1rc6a_ | All beta proteins | Double-stranded beta-helix | RmlC-like cupins | YlbA-like | Hypothetical protein YlbA | (Escherichia coli ) [TaxId: 562 ], | SCOPe (2.08) |
B | d1rc6b_ | All beta proteins | Double-stranded beta-helix | RmlC-like cupins | YlbA-like | Hypothetical protein YlbA | (Escherichia coli ) [TaxId: 562 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF05899 | e1rc6A3 | A: beta sandwiches | X: jelly-roll | H: Double-stranded beta-helix (From Topology) | T: Double-stranded beta-helix | F: PF05899 | ECOD (1.6) |
A | PF07883 | e1rc6A2 | A: beta sandwiches | X: jelly-roll | H: Double-stranded beta-helix (From Topology) | T: Double-stranded beta-helix | F: PF07883 | ECOD (1.6) |
B | PF05899 | e1rc6B3 | A: beta sandwiches | X: jelly-roll | H: Double-stranded beta-helix (From Topology) | T: Double-stranded beta-helix | F: PF05899 | ECOD (1.6) |
B | PF07883 | e1rc6B2 | A: beta sandwiches | X: jelly-roll | H: Double-stranded beta-helix (From Topology) | T: Double-stranded beta-helix | F: PF07883 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.60.120.10 | Mainly Beta | Sandwich | Jelly Rolls | Jelly Rolls | CATH (4.3.0) |
B | 2.60.120.10 | Mainly Beta | Sandwich | Jelly Rolls | Jelly Rolls | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF07883 | Cupin domain (Cupin_2) | Cupin domain | This family represents the conserved barrel domain of the 'cupin' superfamily [1] ('cupa' is the Latin term for a small barrel). | Domain | |
PF05899 | EutQ-like cupin domain (Cupin_3) | EutQ-like cupin domain | This entry represents the cupin domain, with a conserved jelly roll-like beta-barrel fold capable of homodimerisation found in bacteria, plant and fungi. It is present in EutQ family from the eut operon, involved in ethanolamine degradation. EutQ is ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR044704 | (S)-ureidoglycine aminohydrolase, N-terminal cupin domain | Domain | |
IPR044697 | (S)-ureidoglycine aminohydrolase, C-terminal cupin domain | Domain | |
IPR011051 | RmlC-like cupin domain superfamily | Homologous Superfamily | |
IPR017627 | (S)-ureidoglycine aminohydrolase | Family | |
IPR013096 | Cupin 2, conserved barrel | Domain | |
IPR008579 | (S)-ureidoglycine aminohydrolase, cupin domain | Domain | |
IPR014710 | RmlC-like jelly roll fold | Homologous Superfamily |