1R9F
Crystal structure of p19 complexed with 19-bp small interfering RNA
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| C [auth A] | d1r9fa1 | Alpha and beta proteins (a+b) | Tombusvirus P19 core protein, VP19 | Tombusvirus P19 core protein, VP19 | Tombusvirus P19 core protein, VP19 | Tombusvirus P19 core protein, VP19 | (Tomato bushy stunt virus ) [TaxId: 12145 ], | SCOPe (2.08) |
| C [auth A] | d1r9fa2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | (Tomato bushy stunt virus ) [TaxId: 12145 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| C [auth A] | SCOP2 Family | Tombusvirus P19 core protein VP19 | 8028082 | 4001511 | SCOP2 (2022-06-29) |
| C [auth A] | SCOP2 Superfamily | Tombusvirus P19 core protein VP19 | 8040461 | 3001735 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| C [auth A] | PF03220 | e1r9fA1 | A: a+b two layers | X: Tombusvirus P19 core protein, VP19 (From Topology) | H: Tombusvirus P19 core protein, VP19 (From Topology) | T: Tombusvirus P19 core protein, VP19 | F: PF03220 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| C [auth A] | 3.30.390.180 | Alpha Beta | 2-Layer Sandwich | Enolase-like | domain 1 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| C [auth A] | PF03220 | Tombusvirus P19 core protein (Tombus_P19) | Tombusvirus P19 core protein | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| A [auth B] | 5'-R(*CP*GP*UP*AP*CP*GP*CP*GP*GP*AP*AP*UP*AP*CP*UP*UP*CP*GP*AP*UP*U)-3' | - | - | - |
| B [auth C] | 5'-R(*UP*CP*GP*AP*AP*GP*UP*AP*UP*UP*CP*CP*GP*CP*GP*UP*AP*CP*GP*UP*U)-3' | - | - | - |
| C [auth A] | Core protein P19 | - |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| C [auth A] | IPR036131 | Tombusvirus P19 superfamily | Homologous Superfamily |
| C [auth A] | IPR004905 | Tombusvirus p19 core protein | Family |
