Annotations: 1QD7

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
J	d1qd7j_	Low resolution protein structures	Ribosome and ribosomal fragments	Ribosome and ribosomal fragments	Small subunit	Prokaryotic (30S subunit)	(Thermus thermophilus ) [TaxId: 274 ],	SCOPe (2.08)
C	d1qd7c1	Low resolution protein structures	Ribosome and ribosomal fragments	Ribosome and ribosomal fragments	Small subunit	Prokaryotic (30S subunit)	(Thermus thermophilus ) [TaxId: 274 ],	SCOPe (2.08)
C	d1qd7c2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Thermus thermophilus ) [TaxId: 274 ],	SCOPe (2.08)
D	d1qd7d_	Low resolution protein structures	Ribosome and ribosomal fragments	Ribosome and ribosomal fragments	Small subunit	Prokaryotic (30S subunit)	(Thermus thermophilus ) [TaxId: 274 ],	SCOPe (2.08)
E	d1qd7e_	Low resolution protein structures	Ribosome and ribosomal fragments	Ribosome and ribosomal fragments	Small subunit	Prokaryotic (30S subunit)	(Thermus thermophilus ) [TaxId: 274 ],	SCOPe (2.08)
F	d1qd7f_	Low resolution protein structures	Ribosome and ribosomal fragments	Ribosome and ribosomal fragments	Small subunit	Prokaryotic (30S subunit)	(Thermus thermophilus ) [TaxId: 274 ],	SCOPe (2.08)
G	d1qd7g_	Low resolution protein structures	Ribosome and ribosomal fragments	Ribosome and ribosomal fragments	Small subunit	Prokaryotic (30S subunit)	(Thermus thermophilus ) [TaxId: 274 ],	SCOPe (2.08)
H	d1qd7h_	Low resolution protein structures	Ribosome and ribosomal fragments	Ribosome and ribosomal fragments	Small subunit	Prokaryotic (30S subunit)	(Thermus thermophilus ) [TaxId: 274 ],	SCOPe (2.08)
I	d1qd7i_	Low resolution protein structures	Ribosome and ribosomal fragments	Ribosome and ribosomal fragments	Small subunit	Prokaryotic (30S subunit)	(Thermus thermophilus ) [TaxId: 274 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
C	SCOP2B Superfamily	Alpha-L RNA-binding motif	8035740	3001473	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Ribosomal protein S5 domain 2-like	8034422	3000100	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	dsRNA-binding domain-like	8035098	3000985	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Ribosomal protein S7	8033523	3000799	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	S15/NS1 RNA-binding domain	8036747	3001284	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Nucleic acid-binding proteins	8041956	3000135	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C	PF00163,PF01479	e1qd7C1	A: a+b two layers	X: beta-Grasp	H: Ubiquitin-related	T: Alpha-L RNA-binding motif	F: PF00163,PF01479	ECOD (1.6)
D	PF03719	e1qd7D2	A: a+b two layers	X: Ribosomal protein S5 domain 2-like (From Topology)	H: Ribosomal protein S5 domain 2-like (From Topology)	T: Ribosomal protein S5 domain 2-like	F: PF03719	ECOD (1.6)
D	PF00333	e1qd7D1	A: a+b two layers	X: dsRBD-like	H: dsRNA-binding domain-like (From Topology)	T: dsRNA-binding domain-like	F: PF00333	ECOD (1.6)
E	PF01250	e1qd7E1	A: a+b two layers	X: Alpha-beta plaits	H: Ribosomal protein S6 (From Topology)	T: Ribosomal protein S6	F: PF01250	ECOD (1.6)
F	PF00177	e1qd7F1	A: alpha arrays	X: Ribosomal protein S7 (From Topology)	H: Ribosomal protein S7 (From Topology)	T: Ribosomal protein S7	F: PF00177	ECOD (1.6)
G	PF00410	e1qd7G1	A: a+b two layers	X: R3H domain-like	H: Ribosomal protein S8, N-terminal domain (From Topology)	T: Ribosomal protein S8, N-terminal domain	F: PF00410	ECOD (1.6)
G	PF00410	e1qd7G2	A: a+b two layers	X: Ribosomal protein S8, C-terminal domain (From Topology)	H: Ribosomal protein S8, C-terminal domain (From Topology)	T: Ribosomal protein S8, C-terminal domain	F: PF00410	ECOD (1.6)
H	PF00312	e1qd7H1	A: alpha arrays	X: S15/NS1 RNA-binding domain (From Topology)	H: S15/NS1 RNA-binding domain (From Topology)	T: S15/NS1 RNA-binding domain	F: PF00312	ECOD (1.6)
I	PF00366	e1qd7I1	A: beta barrels	X: OB-fold	H: Nucleic acid-binding proteins (From Topology)	T: Nucleic acid-binding proteins	F: PF00366	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
C	PF00163	Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)	Ribosomal protein S4/S9 N-terminal domain	-	Family
C	PF01479	S4 domain (S4)	S4 domain	The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...	The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.	Domain
D	PF03719	Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)	Ribosomal protein S5, C-terminal domain	-	Domain
D	PF00333	Ribosomal protein S5, N-terminal domain (Ribosomal_S5)	Ribosomal protein S5, N-terminal domain	-	Domain
E	PF01250	Ribosomal protein S6 (Ribosomal_S6)	Ribosomal protein S6	-	Domain
F	PF00177	Ribosomal protein S7p/S5e (Ribosomal_S7)	Ribosomal protein S7p/S5e	This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.	Domain
G	PF00410	Ribosomal protein S8 (Ribosomal_S8)	Ribosomal protein S8	-	Domain
H	PF00312	Ribosomal protein S15 (Ribosomal_S15)	Ribosomal protein S15	-	Domain
I	PF00366	Ribosomal protein S17 (Ribosomal_S17)	Ribosomal protein S17	-	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	CENTRAL FRAGMENT OF 16 S RNA	-	-	-
J	S20 RIBOSOMAL PROTEIN	-	-	-
B	END FRAGMENT OF 16 S RNA	-	-	-
C	S4 RIBOSOMAL PROTEIN	structural molecule activity structural constituent of ribosome RNA binding binding organic cyclic compound binding rRNA binding nucleic acid binding	response to stimulus response to chemical response to antibiotic organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process organic substance metabolic process biosynthetic process organic substance biosynthetic process response to stimulus response to chemical response to antibiotic organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process organic substance metabolic process biosynthetic process organic substance biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex intracellular anatomical structure small ribosomal subunit cellular anatomical entity ribosomal subunit intracellular organelle organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome non-membrane-bounded organelle
D	S5 RIBOSOMAL PROTEIN	RNA binding binding organic cyclic compound binding rRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome	response to stimulus response to chemical response to antibiotic organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process organic substance metabolic process biosynthetic process organic substance biosynthetic process response to stimulus response to chemical response to antibiotic organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process organic substance metabolic process biosynthetic process organic substance biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex intracellular anatomical structure small ribosomal subunit cellular anatomical entity ribosomal subunit intracellular organelle organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome non-membrane-bounded organelle cytoplasm
E	S6 RIBOSOMAL PROTEIN	structural molecule activity structural constituent of ribosome RNA binding binding organic cyclic compound binding rRNA binding nucleic acid binding	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process organic substance metabolic process biosynthetic process organic substance biosynthetic process metabolic process cellular process protein metabolic process organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process organic substance metabolic process biosynthetic process organic substance biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex ribonucleoprotein complex intracellular anatomical structure cytoplasm cellular anatomical entity intracellular organelle organelle intracellular non-membrane-bounded organelle ribosome non-membrane-bounded organelle
F	S7 RIBOSOMAL PROTEIN	RNA binding binding organic cyclic compound binding tRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome rRNA binding	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process organic substance metabolic process biosynthetic process organic substance biosynthetic process metabolic process cellular process protein metabolic process organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process organic substance metabolic process biosynthetic process organic substance biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex intracellular anatomical structure small ribosomal subunit cellular anatomical entity ribosomal subunit intracellular organelle organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome non-membrane-bounded organelle
G	S8 RIBOSOMAL PROTEIN	structural molecule activity structural constituent of ribosome RNA binding binding organic cyclic compound binding rRNA binding nucleic acid binding	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process organic substance metabolic process biosynthetic process organic substance biosynthetic process metabolic process cellular process protein metabolic process organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process organic substance metabolic process biosynthetic process organic substance biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex ribonucleoprotein complex intracellular anatomical structure cytoplasm cellular anatomical entity intracellular organelle organelle intracellular non-membrane-bounded organelle ribosome non-membrane-bounded organelle
H	S15 RIBOSOMAL PROTEIN	structural molecule activity structural constituent of ribosome RNA binding binding organic cyclic compound binding rRNA binding nucleic acid binding	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process organic substance metabolic process biosynthetic process organic substance biosynthetic process metabolic process cellular process protein metabolic process organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process organic substance metabolic process biosynthetic process organic substance biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex ribonucleoprotein complex intracellular anatomical structure cytoplasm cellular anatomical entity intracellular organelle organelle intracellular non-membrane-bounded organelle ribosome non-membrane-bounded organelle
I	S17 RIBOSOMAL PROTEIN	structural molecule activity structural constituent of ribosome RNA binding binding organic cyclic compound binding rRNA binding nucleic acid binding	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process organic substance metabolic process biosynthetic process organic substance biosynthetic process metabolic process cellular process protein metabolic process organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process organic substance metabolic process biosynthetic process organic substance biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex ribonucleoprotein complex intracellular organelle intracellular anatomical structure organelle intracellular non-membrane-bounded organelle ribosome cellular anatomical entity non-membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C	IPR018079	Small ribosomal subunit protein uS4, conserved site	Conserved Site
C	IPR002942	RNA-binding S4 domain	Domain
C	IPR001912	Small ribosomal subunit protein uS4, N-terminal	Domain
C	IPR036986	RNA-binding S4 domain superfamily	Homologous Superfamily
C	IPR005709	Small ribosomal subunit protein uS4, bacterial-type	Family
C	IPR022801	Small ribosomal subunit protein uS4	Family
D	IPR000851	Small ribosomal subunit protein uS5	Family
D	IPR005324	Small ribosomal subunit protein uS5, C-terminal	Domain
D	IPR013810	Small ribosomal subunit protein uS5, N-terminal	Domain
D	IPR020568	Ribosomal protein uS5 domain 2-type superfamily	Homologous Superfamily
D	IPR018192	Small ribosomal subunit protein uS5, N-terminal, conserved site	Conserved Site
D	IPR005712	Small ribosomal subunit protein uS5, bacterial-type	Family
D	IPR014721	Small ribosomal subunit protein uS5 domain 2-type fold, subgroup	Homologous Superfamily
E	IPR020815	Small ribosomal subunit protein bS6, conserved site	Conserved Site
E	IPR000529	Small ribosomal subunit protein bS6	Family
E	IPR020814	Small ribosomal subunit protein bS6, plastid/chloroplast	Family
E	IPR035980	Small ribosomal subunit protein bS6 superfamily	Homologous Superfamily
E	IPR014717	Translation elongation factor EF1B/small ribosomal subunit protein bS6	Homologous Superfamily
F	IPR020606	Small ribosomal subunit protein uS7, conserved site	Conserved Site
F	IPR000235	Small ribosomal subunit protein uS7	Family
F	IPR005717	Small ribosomal subunit protein uS7, bacterial/organellar-type	Family
F	IPR036823	Small ribosomal subunit protein uS7 domain superfamily	Homologous Superfamily
F	IPR023798	Small ribosomal subunit protein uS7 domain	Domain
G	IPR000630	Small ribosomal subunit protein uS8	Family
G	IPR047863	Small ribosomal subunit protein uS8, conserved site	Conserved Site
G	IPR035987	Small ribosomal subunit protein uS8 superfamily	Homologous Superfamily
H	IPR005290	Small ribosomal subunit protein uS15, bacterial-type	Family
H	IPR009068	uS15/NS1, RNA-binding domain superfamily	Homologous Superfamily
H	IPR000589	Small ribosomal subunit protein uS15	Family
I	IPR019984	Small ribosomal subunit protein uS17, bacteria/chloroplast	Family
I	IPR019979	Small ribosomal subunit protein uS17, conserved site	Conserved Site
I	IPR012340	Nucleic acid-binding, OB-fold	Homologous Superfamily
I	IPR000266	Small ribosomal subunit protein uS17	Family