1NO7

Structure of the Large Protease Resistant Upper Domain of VP5, the Major Capsid Protein of Herpes Simplex Virus-1

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1no7a_	Multi-domain proteins (alpha and beta)	Major capsid protein VP5	Major capsid protein VP5	Major capsid protein VP5	Major capsid protein VP5	Herpes simplex virus type 1 (Human alphaherpesvirus 1 ) [TaxId: 10298 ],	SCOPe (2.08)
B	d1no7b_	Multi-domain proteins (alpha and beta)	Major capsid protein VP5	Major capsid protein VP5	Major capsid protein VP5	Major capsid protein VP5	Herpes simplex virus type 1 (Human alphaherpesvirus 1 ) [TaxId: 10298 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Major capsid protein VP5	8024486	4001666	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Herpes simplex virus MCP-like	8036865	3000230	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	Herpes simplex virus MCP-like	8036865	3000230	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Herpes_MCP	e1no7A1	A: a+b complex topology	X: Major capsid protein VP5 (From Topology)	H: Major capsid protein VP5 (From Topology)	T: Major capsid protein VP5	F: Herpes_MCP	ECOD (1.6)
B	Herpes_MCP	e1no7B1	A: a+b complex topology	X: Major capsid protein VP5 (From Topology)	H: Major capsid protein VP5 (From Topology)	T: Major capsid protein VP5	F: Herpes_MCP	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF03122	Herpes virus major capsid protein (Herpes_MCP)	Herpes virus major capsid protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Major capsid protein	structural molecule activity	-	host intracellular membrane-bounded organelle host cellular component host intracellular part host cell part host intracellular region cellular anatomical entity host cell nucleus host intracellular organelle viral capsid icosahedral viral capsid virion component T=16 icosahedral viral capsid

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR000912	Herpesvirus major capsid protein	Family
A, B	IPR023233	Herpesvirus major capsid protein, upper domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.