Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2 FamilyInternalin Ig-like domain8055068 4007527 SCOP2 (2022-06-29)
ASCOP2 FamilyGW domain8031028 4002590 SCOP2 (2022-06-29)
ASCOP2 FamilyGW domain8031030 4002590 SCOP2 (2022-06-29)
ASCOP2 FamilyGW domain8031033 4002590 SCOP2 (2022-06-29)
ASCOP2 FamilyInternalin LRR domain8023955 4003535 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyE set domains8055069 3000070 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyProkaryotic SH3-related domain8043406 3001455 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyProkaryotic SH3-related domain8043408 3001455 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyProkaryotic SH3-related domain8043411 3001455 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyL domain-like8036334 3001010 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF13457e1m9sA3 A: beta barrelsX: SH3H: SH3T: SH3F: PF13457ECOD (1.6)
APF08191e1m9sA4 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF08191ECOD (1.6)
APF12799e1m9sA2 A: beta duplicates or obligate multimersX: Single-stranded right-handed beta-helixH: Leucine-rich repeats (From Topology)T: Leucine-rich repeatsF: PF12799ECOD (1.6)
APF12354e1m9sA5 A: alpha arraysX: EF-handH: EF-hand-relatedT: EF-handF: PF12354ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.80.10.10 Alpha Beta Alpha-Beta Horseshoe Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) Ribonuclease InhibitorCATH (4.3.0)
A2.60.40.1220 Mainly Beta Sandwich Immunoglobulin-like CATH (4.3.0)
A2.30.30.170 Mainly Beta Roll SH3 type barrels. CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF12354Bacterial adhesion/invasion protein N terminal (Internalin_N)Bacterial adhesion/invasion protein N terminalThis domain family is found in bacteria, and is approximately 60 amino acids in length. The family is found in association with Pfam:PF00560, Pfam:PF08191, Pfam:PF09479. There are two completely conserved residues (I and F) that may be functionally i ...This domain family is found in bacteria, and is approximately 60 amino acids in length. The family is found in association with Pfam:PF00560, Pfam:PF08191, Pfam:PF09479. There are two completely conserved residues (I and F) that may be functionally important. Internalin mediates bacterial adhesion and invasion of epithelial cells in the human intestine through specific interaction with its host cell receptor E-cadherin. This family is the N terminal of internalin, the cap domain of the protein. The cap domain is conserved between different internalin types. The cap domain does not interact with E cadherin, therefore its function is presumably structural: capping the hydrophobic core.
Domain
PF13457GW (Gly-Tryp) dipeptide domain (GW)GW (Gly-Tryp) dipeptide domainThis is a GW domain found in the C-terminal of InlB proteins which belong to the extended family of internalin proteins found in Listeria [1]. These 80 residue GW domains are unique to InlB among the internalins but are present in other proteins of G ...This is a GW domain found in the C-terminal of InlB proteins which belong to the extended family of internalin proteins found in Listeria [1]. These 80 residue GW domains are unique to InlB among the internalins but are present in other proteins of Gram-positive bacteria [2]. GW domains (named after a GlyTryp dipeptide) are structurally and evolutionary related to SH3 domains [1]. Despite of this, GW domains are unlikely to act as functional mimics of SH3 domains since their potential proline-binding sites are blocked or destroyed [2]. They are highly basic and interact with poly-anions. The GW domains are responsible for the non-covalent attachment to the bacterial cell surface through binding to lipoteichoic acid. The GW domains alone do not stimulate uptake, but they synergize with the Met-binding internalin domain [1].
Domain
PF12799Leucine Rich repeats (2 copies) (LRR_4)Leucine Rich repeats (2 copies)- Repeat