1GW7

QUASI-ATOMIC RESOLUTION MODEL OF BACTERIOPHAGE PRD1 CAPSID, OBTAINED BY COMBINED CRYO-EM AND X-RAY CRYSTALLOGRAPHY.

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1gw7a_	Low resolution protein structures	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	p3 shell	(Enterobacteria phage PRD1 ) [TaxId: 10658 ],	SCOPe (2.08)
B	d1gw7b_	Low resolution protein structures	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	p3 shell	(Enterobacteria phage PRD1 ) [TaxId: 10658 ],	SCOPe (2.08)
C	d1gw7c_	Low resolution protein structures	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	p3 shell	(Enterobacteria phage PRD1 ) [TaxId: 10658 ],	SCOPe (2.08)
D	d1gw7d_	Low resolution protein structures	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	p3 shell	(Enterobacteria phage PRD1 ) [TaxId: 10658 ],	SCOPe (2.08)
E	d1gw7e_	Low resolution protein structures	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	p3 shell	(Enterobacteria phage PRD1 ) [TaxId: 10658 ],	SCOPe (2.08)
F	d1gw7f_	Low resolution protein structures	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	p3 shell	(Enterobacteria phage PRD1 ) [TaxId: 10658 ],	SCOPe (2.08)
G	d1gw7g_	Low resolution protein structures	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	p3 shell	(Enterobacteria phage PRD1 ) [TaxId: 10658 ],	SCOPe (2.08)
H	d1gw7h_	Low resolution protein structures	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	p3 shell	(Enterobacteria phage PRD1 ) [TaxId: 10658 ],	SCOPe (2.08)
I	d1gw7i_	Low resolution protein structures	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	p3 shell	(Enterobacteria phage PRD1 ) [TaxId: 10658 ],	SCOPe (2.08)
J	d1gw7j_	Low resolution protein structures	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	p3 shell	(Enterobacteria phage PRD1 ) [TaxId: 10658 ],	SCOPe (2.08)
K	d1gw7k_	Low resolution protein structures	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	p3 shell	(Enterobacteria phage PRD1 ) [TaxId: 10658 ],	SCOPe (2.08)
L	d1gw7l_	Low resolution protein structures	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	Viruses and virus-receptor complexes	p3 shell	(Enterobacteria phage PRD1 ) [TaxId: 10658 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Group II dsDNA viruses VP	8032457	3001214	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Group II dsDNA viruses VP	8032458	3001214	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Group II dsDNA viruses VP	8032458	3001214	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Group II dsDNA viruses VP	8032457	3001214	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Group II dsDNA viruses VP	8032458	3001214	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Group II dsDNA viruses VP	8032457	3001214	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Group II dsDNA viruses VP	8032457	3001214	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Group II dsDNA viruses VP	8032458	3001214	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Group II dsDNA viruses VP	8032458	3001214	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Group II dsDNA viruses VP	8032457	3001214	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Group II dsDNA viruses VP	8032457	3001214	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Group II dsDNA viruses VP	8032458	3001214	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Group II dsDNA viruses VP	8032458	3001214	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Group II dsDNA viruses VP	8032457	3001214	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Group II dsDNA viruses VP	8032458	3001214	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Group II dsDNA viruses VP	8032457	3001214	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Group II dsDNA viruses VP	8032458	3001214	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Group II dsDNA viruses VP	8032457	3001214	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Group II dsDNA viruses VP	8032458	3001214	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Group II dsDNA viruses VP	8032457	3001214	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Group II dsDNA viruses VP	8032458	3001214	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Group II dsDNA viruses VP	8032457	3001214	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Group II dsDNA viruses VP	8032458	3001214	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Group II dsDNA viruses VP	8032457	3001214	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF09018	e1gw7A2	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: PF09018	ECOD (1.6)
B	PF09018	e1gw7B2	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: PF09018	ECOD (1.6)
C	PF09018	e1gw7C2	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: PF09018	ECOD (1.6)
D	PF09018	e1gw7D2	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: PF09018	ECOD (1.6)
E	PF09018	e1gw7E2	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: PF09018	ECOD (1.6)
F	PF09018	e1gw7F2	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: PF09018	ECOD (1.6)
G	PF09018	e1gw7G2	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: PF09018	ECOD (1.6)
H	PF09018	e1gw7H2	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: PF09018	ECOD (1.6)
I	PF09018	e1gw7I2	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: PF09018	ECOD (1.6)
J	PF09018	e1gw7J2	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: PF09018	ECOD (1.6)
K	PF09018	e1gw7K2	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: PF09018	ECOD (1.6)
L	PF09018	e1gw7L2	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: PF09018	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	PF09018	P3 major capsid protein (Phage_Capsid_P3)	P3 major capsid protein	The P3 major capsid protein adopts a 'double-barrel' structure comprising two eight-stranded viral beta-barrels or jelly rolls, each of which contains a 12-residue alpha-helix. This protein then trimerises through a 'trimerisation loop' sequence, and ...	The P3 major capsid protein adopts a 'double-barrel' structure comprising two eight-stranded viral beta-barrels or jelly rolls, each of which contains a 12-residue alpha-helix. This protein then trimerises through a 'trimerisation loop' sequence, and is incorporated within the viral capsid [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	MAJOR CAPSID PROTEIN	-	-	viral capsid virion component

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR029053	Viral coat protein subunit	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR016112	Group II dsDNA virus coat/capsid protein	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR015108	Bacteriophage PRD1, P3	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR016115	Bacteriophage PRD1, P3, N-terminal	Homologous Superfamily