1FNN
CRYSTAL STRUCTURE OF CDC6P FROM PYROBACULUM AEROPHILUM
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1fnna1 | All alpha proteins | DNA/RNA-binding 3-helical bundle | 'Winged helix' DNA-binding domain | Helicase DNA-binding domain | CDC6, C-terminal domain | (Pyrobaculum aerophilum ) [TaxId: 13773 ], | SCOPe (2.08) |
A | d1fnna2 | Alpha and beta proteins (a/b) | P-loop containing nucleoside triphosphate hydrolases | P-loop containing nucleoside triphosphate hydrolases | Extended AAA-ATPase domain | CDC6, N-domain | (Pyrobaculum aerophilum ) [TaxId: 13773 ], | SCOPe (2.08) |
B | d1fnnb1 | All alpha proteins | DNA/RNA-binding 3-helical bundle | 'Winged helix' DNA-binding domain | Helicase DNA-binding domain | CDC6, C-terminal domain | (Pyrobaculum aerophilum ) [TaxId: 13773 ], | SCOPe (2.08) |
B | d1fnnb2 | Alpha and beta proteins (a/b) | P-loop containing nucleoside triphosphate hydrolases | P-loop containing nucleoside triphosphate hydrolases | Extended AAA-ATPase domain | CDC6, N-domain | (Pyrobaculum aerophilum ) [TaxId: 13773 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Helicase DNA-binding domain | 8002902 | 4000172 | SCOP2 (2022-06-29) |
A | SCOP2 Family | Extended AAA-ATPase domain | 8002901 | 4000283 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Winged helix DNA-binding domain | 8017739 | 3000034 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | DNA polymerases epsilon N-terminal domain (Dpoe2NT)-like | 8104164 | 3002834 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | RecA-like P-loop NTPases | 8017742 | 3002019 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | RecA-like P-loop NTPases | 8017742 | 3002019 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | DNA polymerases epsilon N-terminal domain (Dpoe2NT)-like | 8104164 | 3002834 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Winged helix DNA-binding domain | 8017739 | 3000034 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF09079 | e1fnnA1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF09079 | ECOD (1.6) |
A | PF22703 | e1fnnA2 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF22703 | ECOD (1.6) |
A | PF13401 | e1fnnA3 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF13401 | ECOD (1.6) |
B | PF09079 | e1fnnB1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF09079 | ECOD (1.6) |
B | PF22703 | e1fnnB2 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF22703 | ECOD (1.6) |
B | PF13401 | e1fnnB3 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF13401 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.10.8.60 | Mainly Alpha | Orthogonal Bundle | Helicase, Ruva Protein | domain 3 | CATH (4.3.0) |
A | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (4.3.0) |
A | 1.10.10.10 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | CATH (4.3.0) |
B | 1.10.8.60 | Mainly Alpha | Orthogonal Bundle | Helicase, Ruva Protein | domain 3 | CATH (4.3.0) |
B | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (4.3.0) |
B | 1.10.10.10 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF09079 | CDC6, C terminal winged helix domain (Cdc6_C) | CDC6, C terminal winged helix domain | The C terminal domain of CDC6 assumes a winged helix fold, with a five alpha-helical bundle (alpha15-alpha19) structure, backed on one side by three beta strands (beta6-beta8). It has been shown that this domain acts as a DNA-localisation factor, how ... | Domain | |
PF13401 | AAA domain (AAA_22) | AAA domain | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR015163 | Cdc6, C-terminal | Domain | |
IPR003593 | AAA+ ATPase domain | Domain | |
IPR036388 | Winged helix-like DNA-binding domain superfamily | Homologous Superfamily | |
IPR014277 | Orc1/Cdc6-type DNA replication protein, archaea | Family | |
IPR036390 | Winged helix DNA-binding domain superfamily | Homologous Superfamily | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily |