Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad1ezva1 Alpha and beta proteins (a+b) LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase MPP-like Cytochrome bc1 core subunit 1 baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ], SCOPe (2.08)
J [auth X]d1ezvx_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) Immunoglobulin heavy chain variable domain, VH house mouse (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
K [auth Y]d1ezvy_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) Immunoglobulin light chain kappa variable domain, VL-kappa house mouse (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
Bd1ezvb1 Alpha and beta proteins (a+b) LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase MPP-like Cytochrome bc1 core subunit 2 baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ], SCOPe (2.08)
Cd1ezvc3 Membrane and cell surface proteins and peptides Heme-binding four-helical bundle Transmembrane di-heme cytochromes Cytochrome b of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Mitochondrial cytochrome b subunit, N-terminal domain baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ], SCOPe (2.08)
Cd1ezvc2 Membrane and cell surface proteins and peptides a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Mitochondrial cytochrome b subunit, C-terminal domain baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ], SCOPe (2.08)
Dd1ezvd1 All alpha proteins Cytochrome c Cytochrome c Cytochrome bc1 domain Cytochrome bc1 domain baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ], SCOPe (2.08)
Dd1ezvd2 Membrane and cell surface proteins and peptides Single transmembrane helix Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ], SCOPe (2.08)
Ed1ezve1 All beta proteins ISP domain ISP domain Rieske iron-sulfur protein (ISP) ISP subunit of the mitochondrial cytochrome bc1-complex, water-soluble domain baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ], SCOPe (2.08)
Ed1ezve2 Membrane and cell surface proteins and peptides Single transmembrane helix ISP transmembrane anchor ISP transmembrane anchor Iron-sulfur subunit (ISP) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane region baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ], SCOPe (2.08)
F [auth H]d1ezvh_ Membrane and cell surface proteins and peptides Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ], SCOPe (2.08)
G [auth F]d1ezvf_ Membrane and cell surface proteins and peptides 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ], SCOPe (2.08)
H [auth G]d1ezvg_ Membrane and cell surface proteins and peptides Single transmembrane helix Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ], SCOPe (2.08)
Id1ezvi_ Membrane and cell surface proteins and peptides Single transmembrane helix Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyLuxS/MPP-like metallohydrolase8040292 3001831 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyLuxS/MPP-like metallohydrolase8040294 3001831 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyLuxS/MPP-like metallohydrolase8040297 3001831 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyLuxS/MPP-like metallohydrolase8040300 3001831 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyTransmembrane di-heme cytochromes8040302 3000517 SCOP2B (2022-06-29)
CSCOP2B Superfamilya domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)8040299 3000966 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyCytochrome c8040304 3000815 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyCytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) transmembrane anchor8040305 3000762 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyISP domain8040307 3000233 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyISP transmembrane anchor8040308 3000753 SCOP2B (2022-06-29)
F [auth H]SCOP2B SuperfamilyNon-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)8040312 3000806 SCOP2B (2022-06-29)
G [auth F]SCOP2B Superfamily14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)8040315 3000797 SCOP2B (2022-06-29)
H [auth G]SCOP2B SuperfamilyUbiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)8040318 3000770 SCOP2B (2022-06-29)
ISCOP2B SuperfamilySubunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)8040319 3000779 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APeptidase_M16_Ce1ezvA2 A: a+b two layersX: LuxS, MPP, ThrRS/AlaRS common domainH: LuxS, MPP, ThrRS/AlaRS common domainT: LuxS/MPP-like metallohydrolaseF: Peptidase_M16_CECOD (1.6)
APeptidase_M16e1ezvA1 A: a+b two layersX: LuxS, MPP, ThrRS/AlaRS common domainH: LuxS, MPP, ThrRS/AlaRS common domainT: LuxS/MPP-like metallohydrolaseF: Peptidase_M16ECOD (1.6)
J [auth X]V-set_8e1ezvX1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-set_8ECOD (1.6)
K [auth Y]V-sete1ezvY1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-setECOD (1.6)
BPeptidase_M16e1ezvB1 A: a+b two layersX: LuxS, MPP, ThrRS/AlaRS common domainH: LuxS, MPP, ThrRS/AlaRS common domainT: LuxS/MPP-like metallohydrolaseF: Peptidase_M16ECOD (1.6)
BUNK_F_TYPEe1ezvB2 A: a+b two layersX: LuxS, MPP, ThrRS/AlaRS common domainH: LuxS, MPP, ThrRS/AlaRS common domainT: LuxS/MPP-like metallohydrolaseF: UNK_F_TYPEECOD (1.6)
CCytochrom_B_Ce1ezvC1 A: alpha bundlesX: a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) (From Topology)H: a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) (From Topology)T: a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)F: Cytochrom_B_CECOD (1.6)
CCytochrome_Be1ezvC2 A: alpha bundlesX: Transmembrane heme-binding four-helical bundle (From Homology)H: Transmembrane heme-binding four-helical bundleT: Transmembrane di-heme cytochromesF: Cytochrome_BECOD (1.6)
DCytochrom_C1_Ne1ezvD1 A: alpha arraysX: Cytochrome c-likeH: Cytochrome c (From Topology)T: Cytochrome cF: Cytochrom_C1_NECOD (1.6)
DCytochrom_C1_Ce1ezvD2 A: extended segmentsX: cytochrome c1 transmembrane anchor (From Topology)H: cytochrome c1 transmembrane anchor (From Topology)T: cytochrome c1 transmembrane anchorF: Cytochrom_C1_CECOD (1.6)
ERieske_cytochrome_bc1e1ezvE1 A: beta sandwichesX: ISP domain (From Topology)H: ISP domain (From Topology)T: ISP domainF: Rieske_cytochrome_bc1ECOD (1.6)
ERieske_6e1ezvE3 A: few secondary structure elementsX: Trm112p-like (From Topology)H: Trm112p-like (From Topology)T: Trm112p-likeF: Rieske_6ECOD (1.6)
EUCR_TMe1ezvE2 A: extended segmentsX: iron-sulfur subunit (ISP) transmembrane anchor (From Topology)H: iron-sulfur subunit (ISP) transmembrane anchor (From Topology)T: iron-sulfur subunit (ISP) transmembrane anchorF: UCR_TMECOD (1.6)
F [auth H]UCR_hingee1ezvH1 A: alpha bundlesX: cytochrome bc1 complex 11 kDa protein-likeH: Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) (From Topology)T: Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)F: UCR_hingeECOD (1.6)
G [auth F]UCR_14kDe1ezvF1 A: alpha arraysX: 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) (From Topology)H: 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) (From Topology)T: 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)F: UCR_14kDECOD (1.6)
H [auth G]UcrQe1ezvG1 A: extended segmentsX: Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) (From Topology)H: Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) (From Topology)T: Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)F: UcrQECOD (1.6)
IUCR_UQCRX_QCR9e1ezvI1 A: extended segmentsX: Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) (From Topology)H: Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) (From Topology)T: Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)F: UCR_UQCRX_QCR9ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.30.830.10 Alpha Beta 2-Layer Sandwich Cytochrome Bc1 Complex Chain A, domain 1CATH (4.3.0)
J [auth X]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
K [auth Y]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
B3.30.830.10 Alpha Beta 2-Layer Sandwich Cytochrome Bc1 Complex Chain A, domain 1CATH (4.3.0)
C1.20.810.10 Mainly Alpha Up-down Bundle Cytochrome Bc1 Complex Chain CCATH (4.3.0)
D1.20.5.100 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces Cytochrome c1, transmembrane anchor, C-terminalCATH (4.3.0)
D1.10.760.10 Mainly Alpha Orthogonal Bundle Cytochrome Bc1 Complex Chain D, domain 2CATH (4.3.0)
E1.20.5.270 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces Ubiquinol cytochrome reductase, transmembrane domainCATH (4.3.0)
E2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domainCATH (4.3.0)
F [auth H]1.10.287.20 Mainly Alpha Orthogonal Bundle Helix Hairpins Ubiquinol-cytochrome C reductase hinge domainCATH (4.3.0)
G [auth F]1.10.1090.10 Mainly Alpha Orthogonal Bundle Cytochrome Bc1 Complex Chain FCATH (4.3.0)
H [auth G]1.20.5.210 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces Cytochrome b-c1 complex subunit 8CATH (4.3.0)
I1.20.5.260 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces Cytochrome b-c1 complex subunit 9CATH (4.3.0)

IMGT Antibody Annotation IMGT Database Homepage

ChainProtein NameDescriptionOrganism NameGene Allele Name(s)Domain Name(s)Receptor TypeReceptor DescriptionProvenance Source
J [auth X]4C4 VH Mus musculus (house mouse) IGHV3-6*02, IGHV3-6*01, IGHJ4*01 V-DOMAIN VH IG FV-HEAVY_KAPPA IMGT (202415-0)
K [auth Y]4C4 V-KAPPA Mus musculus (house mouse) IGKV10-94*03, IGKV10-96*03, IGKV10-94*04, IGKV10-94*06, IGKV10-96*04, IGKV10-94*05, IGKV10-94*08, IGKJ1*01 V-DOMAIN V-KAPPA IG FV-HEAVY_KAPPA IMGT (202415-0)

SAbDab Antibody Annotation SAbDab Database Homepage

ChainChain ClassChain SubclassChain TypeAntigen Name(s) Provenance Source
J [auth X]Heavy ChainIGHV3 -ubiquinol-cytochrome c reductase iron-sulfursubunit SAbDab (2024-04-19)
K [auth Y]Light ChainIGKV10 Kappaubiquinol-cytochrome c reductase iron-sulfursubunit SAbDab (2024-04-19)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF05193Peptidase M16 inactive domain (Peptidase_M16_C)Peptidase M16 inactive domainPeptidase M16 consists of two structurally related domains. One is the active peptidase, whereas the other is inactive. The two domains hold the substrate like a clamp [1].Domain
PF00675Insulinase (Peptidase family M16) (Peptidase_M16)Insulinase (Peptidase family M16)- Family
J [auth X]PF07686Immunoglobulin V-set domain (V-set)Immunoglobulin V-set domainThis domain is found in antibodies as well as neural protein P0 and CTL4 amongst others.Domain
K [auth Y]PF07686Immunoglobulin V-set domain (V-set)Immunoglobulin V-set domainThis domain is found in antibodies as well as neural protein P0 and CTL4 amongst others.Domain
PF00675Insulinase (Peptidase family M16) (Peptidase_M16)Insulinase (Peptidase family M16)- Family
PF00032Cytochrome b(C-terminal)/b6/petD (Cytochrom_B_C)Cytochrome b(C-terminal)/b6/petD- Domain
PF00033Cytochrome b/b6/petB (Cytochrome_B)Cytochrome b/b6/petB- Domain
PF02167Cytochrome C1 family (Cytochrom_C1)Cytochrome C1 family- Family
PF02921Ubiquinol cytochrome reductase transmembrane region (UCR_TM)Ubiquinol cytochrome reductase transmembrane region- Family
PF00355Rieske [2Fe-2S] domain (Rieske)Rieske [2Fe-2S] domainThe rieske domain has a [2Fe-2S] centre. Two conserved cysteines coordinate one Fe ion, while the other Fe ion is coordinated by two conserved histidines. In hyperthermophilic archaea there is a SKTPCX(2-3)C motif at the C-terminus. The cysteines in ...The rieske domain has a [2Fe-2S] centre. Two conserved cysteines coordinate one Fe ion, while the other Fe ion is coordinated by two conserved histidines. In hyperthermophilic archaea there is a SKTPCX(2-3)C motif at the C-terminus. The cysteines in this motif form a disulphide bridge, which stabilises the protein [4].
Domain
F [auth H]PF02320Ubiquinol-cytochrome C reductase hinge protein (UCR_hinge)Ubiquinol-cytochrome C reductase hinge protein- Family
G [auth F]PF02271Ubiquinol-cytochrome C reductase complex 14kD subunit (UCR_14kD)Ubiquinol-cytochrome C reductase complex 14kD subunit- Family
H [auth G]PF02939UcrQ family (UcrQ)UcrQ family- Family
PF05365Ubiquinol-cytochrome C reductase, UQCRX/QCR9 like (UCR_UQCRX_QCR9)Ubiquinol-cytochrome C reductase, UQCRX/QCR9 like- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX CORE PROTEIN I
J [auth X]HEAVY CHAIN (VH) OF FV-FRAGMENT
K [auth Y]LIGHT CHAIN (VL) OF FV-FRAGMENT-
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX CORE PROTEIN 2
CYTOCHROME B
CYTOCHROME C1
UBIQUINOL-CYTOCHROME C REDUCTASE IRON-SULFUR SUBUNIT
F [auth H]UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 17 KD PROTEIN-
G [auth F]UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KD PROTEIN-
H [auth G]UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX UBIQUINONE-BINDING PROTEIN QP-C-
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 7.3 KD PROTEIN-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR007863Peptidase M16, C-terminalDomain
IPR011249Metalloenzyme, LuxS/M16 peptidase-likeHomologous Superfamily
IPR011765Peptidase M16, N-terminalDomain
J [auth X]IPR013783Immunoglobulin-like foldHomologous Superfamily
J [auth X]IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
J [auth X]IPR013106Immunoglobulin V-set domainDomain
J [auth X]IPR007110Immunoglobulin-like domainDomain
K [auth Y]IPR013783Immunoglobulin-like foldHomologous Superfamily
K [auth Y]IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
K [auth Y]IPR003599Immunoglobulin subtypeDomain
K [auth Y]IPR013106Immunoglobulin V-set domainDomain
K [auth Y]IPR007110Immunoglobulin-like domainDomain
IPR011249Metalloenzyme, LuxS/M16 peptidase-likeHomologous Superfamily
IPR011765Peptidase M16, N-terminalDomain
IPR001431Peptidase M16, zinc-binding siteBinding Site
IPR036150Cytochrome b/b6, C-terminal domain superfamilyHomologous Superfamily
IPR027387Cytochrome b/b6-like domain superfamilyHomologous Superfamily
IPR048260Cytochrome b/b6, C-terminal domain, eukaryotic/bacterialDomain
IPR016174Di-haem cytochrome, transmembraneHomologous Superfamily
IPR005798Cytochrome b/b6, C-terminalDomain
IPR048259Cytochrome b/b6, N-terminal domain, eukaryotic/bacterialDomain
IPR030689Cytochrome bFamily
IPR005797Cytochrome b/b6, N-terminal domainDomain
IPR036909Cytochrome c-like domain superfamilyHomologous Superfamily
IPR002326Cytochrome c1Family
IPR009056Cytochrome c-like domainDomain
IPR021157Cytochrome c1, transmembrane anchor, C-terminalHomologous Superfamily
IPR036922Rieske [2Fe-2S] iron-sulphur domain superfamilyHomologous Superfamily
IPR014349Rieske iron-sulphur proteinFamily
IPR004192Cytochrome b-c1 complex subunit Rieske, transmembrane domainDomain
IPR017941Rieske [2Fe-2S] iron-sulphur domainDomain
IPR005805Rieske iron-sulphur protein, C-terminalDomain
IPR037008Cytochrome bc1 complex subunit Rieske, transmembrane domain superfamilyHomologous Superfamily
IPR006317Ubiquinol-cytochrome c reductase, iron-sulphur subunitDomain
F [auth H]IPR023184Ubiquinol-cytochrome C reductase hinge domainDomain
F [auth H]IPR036811Ubiquinol-cytochrome C reductase hinge domain superfamilyHomologous Superfamily
G [auth F]IPR003197Cytochrome b-c1 complex subunit 7Family
G [auth F]IPR036544Cytochrome b-c1 complex subunit 7 superfamilyHomologous Superfamily
H [auth G]IPR004205Cytochrome b-c1 complex subunit 8Family
H [auth G]IPR036642Cytochrome b-c1 complex subunit 8 superfamilyHomologous Superfamily
IPR008027Cytochrome b-c1 complex subunit 9Family
IPR036656Cytochrome b-c1 complex subunit 9 superfamilyHomologous Superfamily

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

Structure Motif Annotation: Mechanism and Catalytic Site Atlas M-CSA Database Homepage

ChainsEnzyme NameDescriptionCatalytic Residues
C, E
ubiquinol-cytochrome-c reductase  M-CSA #208

Ubiquinol-cytochrome c reductase is a redox driven proton pump that utilises the free energy of ubiquinol reduction for the creation of a proton gradient across membranes (periplasma in prokaryotes and intermembrane space in mitochondria) membrane. The proton-motive Q cycle mechanism best explains experimental results on the ET pathway through the four redox centres of the bc1 complex. The mechanism postulates two separate quinone binding sites, one for quinol oxidation (Qo site) and the other for quinone reduction (Qi site), and a bifurcated electron flow at the Qo site where the first electron from the the substrate quinol is transferred sequentially to the ISP domain (containing an iron-sulfur complex) to the cyt. c1 domain (containing a 1c type heme), and eventually to the soluble electron acceptor cyt. c, whereas the second electron is transferred to the b-type hemes bL and bH in sequence, ending at a quinone or a semiquinone anion at the Qi site. The complete Q cycle consumes two molecules of quinol, generates one molecule of quinone and translocates four protons to the positive side of the membrane. The exact order of the steps in this mechanism remains unclear. There is evidence of a long range interaction between both catalytic sites. Although it is not entirely clear is the oxidation/reduction of the quinol/quinone species are concerted or stepwise, evidence supports the stepwise manner shown here. It has been documented [PMID:12885240] that the ubisemiquinone radical produced during this step required an alkaline pH to be stable in the Qi site, consistent with the assumption that both Asp228 and His201 are deprotonated. Furthermore, electron nuclear double resonance experiments showed exchangeable H-bonds bonds to the ubisemiquinone radical, suggesting that the water-mediated H-bonding acts to stabilise the free radical formed.

Defined by 6 residues: HIS:C-202SER:C-206LYS:C-228ASP:C-229GLU:C-272HIS:E_2-151 [auth E_2-181]
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Explore in 3DM-CSA Motif Definition
Extent of motif is too large to support Structure Motif searching.
EC: 1.10.2.2 (PDB Primary Data)