Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad1cg2a1 Alpha and beta proteins (a/b) Phosphorylase/hydrolase-like Zn-dependent exopeptidases Bacterial dinuclear zinc exopeptidases Carboxypeptidase G2, catalytic domain (Pseudomonas sp. RS-16 ) [TaxId: 312 ], SCOPe (2.08)
Ad1cg2a2 Alpha and beta proteins (a+b) Ferredoxin-like Bacterial exopeptidase dimerisation domain Bacterial exopeptidase dimerisation domain Carboxypeptidase G2 (Pseudomonas sp. RS-16 ) [TaxId: 312 ], SCOPe (2.08)
Bd1cg2b1 Alpha and beta proteins (a/b) Phosphorylase/hydrolase-like Zn-dependent exopeptidases Bacterial dinuclear zinc exopeptidases Carboxypeptidase G2, catalytic domain (Pseudomonas sp. RS-16 ) [TaxId: 312 ], SCOPe (2.08)
Bd1cg2b2 Alpha and beta proteins (a+b) Ferredoxin-like Bacterial exopeptidase dimerisation domain Bacterial exopeptidase dimerisation domain Carboxypeptidase G2 (Pseudomonas sp. RS-16 ) [TaxId: 312 ], SCOPe (2.08)
Cd1cg2c1 Alpha and beta proteins (a/b) Phosphorylase/hydrolase-like Zn-dependent exopeptidases Bacterial dinuclear zinc exopeptidases Carboxypeptidase G2, catalytic domain (Pseudomonas sp. RS-16 ) [TaxId: 312 ], SCOPe (2.08)
Cd1cg2c2 Alpha and beta proteins (a+b) Ferredoxin-like Bacterial exopeptidase dimerisation domain Bacterial exopeptidase dimerisation domain Carboxypeptidase G2 (Pseudomonas sp. RS-16 ) [TaxId: 312 ], SCOPe (2.08)
Dd1cg2d1 Alpha and beta proteins (a/b) Phosphorylase/hydrolase-like Zn-dependent exopeptidases Bacterial dinuclear zinc exopeptidases Carboxypeptidase G2, catalytic domain (Pseudomonas sp. RS-16 ) [TaxId: 312 ], SCOPe (2.08)
Dd1cg2d2 Alpha and beta proteins (a+b) Ferredoxin-like Bacterial exopeptidase dimerisation domain Bacterial exopeptidase dimerisation domain Carboxypeptidase G2 (Pseudomonas sp. RS-16 ) [TaxId: 312 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2 FamilyBacterial exopeptidase dimerisation domain8023136 4001271 SCOP2 (2022-06-29)
ASCOP2 FamilyBacterial dinuclear zinc exopeptidases8019823 4000587 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyBacterial exopeptidase dimerisation domain8035516 3001194 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyZn-dependent exopeptidases8032203 3000662 SCOP2 (2022-06-29)
BSCOP2B SuperfamilyBacterial exopeptidase dimerisation domain8035516 3001194 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyZn-dependent exopeptidases8032203 3000662 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyZn-dependent exopeptidases8032203 3000662 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyZn-dependent exopeptidases8032203 3000662 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyBacterial exopeptidase dimerisation domain8035516 3001194 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyZn-dependent exopeptidases8032203 3000662 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyBacterial exopeptidase dimerisation domain8035516 3001194 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyZn-dependent exopeptidases8032203 3000662 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyZn-dependent exopeptidases8032203 3000662 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF07687e1cg2A1 A: a+b two layersX: Alpha-beta plaitsH: Bacterial exopeptidase dimerisation domain (From Topology)T: Bacterial exopeptidase dimerisation domainF: PF07687ECOD (1.6)
APF01546e1cg2A2 A: a/b three-layered sandwichesX: Phosphorylase/hydrolase-likeH: Zn-dependent exopeptidases (From Topology)T: Zn-dependent exopeptidasesF: PF01546ECOD (1.6)
BPF07687e1cg2B1 A: a+b two layersX: Alpha-beta plaitsH: Bacterial exopeptidase dimerisation domain (From Topology)T: Bacterial exopeptidase dimerisation domainF: PF07687ECOD (1.6)
BPF01546e1cg2B2 A: a/b three-layered sandwichesX: Phosphorylase/hydrolase-likeH: Zn-dependent exopeptidases (From Topology)T: Zn-dependent exopeptidasesF: PF01546ECOD (1.6)
CPF07687e1cg2C1 A: a+b two layersX: Alpha-beta plaitsH: Bacterial exopeptidase dimerisation domain (From Topology)T: Bacterial exopeptidase dimerisation domainF: PF07687ECOD (1.6)
CPF01546e1cg2C2 A: a/b three-layered sandwichesX: Phosphorylase/hydrolase-likeH: Zn-dependent exopeptidases (From Topology)T: Zn-dependent exopeptidasesF: PF01546ECOD (1.6)
DPF07687e1cg2D1 A: a+b two layersX: Alpha-beta plaitsH: Bacterial exopeptidase dimerisation domain (From Topology)T: Bacterial exopeptidase dimerisation domainF: PF07687ECOD (1.6)
DPF01546e1cg2D2 A: a/b three-layered sandwichesX: Phosphorylase/hydrolase-likeH: Zn-dependent exopeptidases (From Topology)T: Zn-dependent exopeptidasesF: PF01546ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.40.630.10 Alpha Beta 3-Layer(aba) Sandwich Aminopeptidase Zn peptidasesCATH (4.3.0)
A3.30.70.360 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits CATH (4.3.0)
B3.40.630.10 Alpha Beta 3-Layer(aba) Sandwich Aminopeptidase Zn peptidasesCATH (4.3.0)
B3.30.70.360 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits CATH (4.3.0)
C3.40.630.10 Alpha Beta 3-Layer(aba) Sandwich Aminopeptidase Zn peptidasesCATH (4.3.0)
C3.30.70.360 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits CATH (4.3.0)
D3.40.630.10 Alpha Beta 3-Layer(aba) Sandwich Aminopeptidase Zn peptidasesCATH (4.3.0)
D3.30.70.360 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D
PF01546Peptidase family M20/M25/M40 (Peptidase_M20)Peptidase family M20/M25/M40- Family
A, B, C, D
PF07687Peptidase dimerisation domain (M20_dimer)Peptidase dimerisation domainThis domain consists of 4 beta strands and two alpha helices which make up the dimerisation surface of members of the M20 family of peptidases [1]. This family includes a range of zinc metallopeptidases belonging to several families in the peptidase ...This domain consists of 4 beta strands and two alpha helices which make up the dimerisation surface of members of the M20 family of peptidases [1]. This family includes a range of zinc metallopeptidases belonging to several families in the peptidase classification [2]. Family M20 are Glutamate carboxypeptidases. Peptidase family M25 contains X-His dipeptidases.
Domain

Structure Motif Annotation: Mechanism and Catalytic Site Atlas M-CSA Database Homepage

ChainsEnzyme NameDescriptionCatalytic Residues
glutamate carboxypeptidase  M-CSA #447

Glutamate carboxypeptidase (also known as carboxypeptidase G2, CPDG2, CPG2 or folate hydrolase G2) belongs to the peptidase M20A family.

G2 is a periplasmic enzyme that is synthesized with a signal peptide and is a dimeric zinc-dependent exopeptidase, with two domains, a catalytic domain, which provides the ligands for the two zinc ions in the active site, and a dimerization domain. It is known to cleave the C-terminal glutamate moiety from a wide range of N-acyl groups, including peptidyl, aminoacyl, benzoyl, benzyloxycarbonyl, folyl (shown in the reference reaction), and pteroyl groups to release benzoic acid, phenol, and aniline mustards. It is used clinically to treat methotrexate toxicity by hydrolysing methotrexate to inactive and non-toxic metabolites. It is also proposed for use in antibody-directed enzyme prodrug therapy against tumor cells.

Defined by 6 residues: HIS:A-90 [auth A-112]ASP:A-119 [auth A-141]GLU:A-153 [auth A-175]GLU:A-154 [auth A-176]GLU:A-178 [auth A-200]HIS:A-363 [auth A-385]
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