1C04

IDENTIFICATION OF KNOWN PROTEIN AND RNA STRUCTURES IN A 5 A MAP OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
C [auth A]	d1c04a_	Low resolution protein structures	Ribosome and ribosomal fragments	Ribosome and ribosomal fragments	Large subunit	Prokaryotic (50S subunit)	(Haloarcula marismortui ) [TaxId: 2238 ],	SCOPe (2.08)
D [auth B]	d1c04b_	Low resolution protein structures	Ribosome and ribosomal fragments	Ribosome and ribosomal fragments	Large subunit	Prokaryotic (50S subunit)	(Haloarcula marismortui ) [TaxId: 2238 ],	SCOPe (2.08)
E [auth C]	d1c04c_	Low resolution protein structures	Ribosome and ribosomal fragments	Ribosome and ribosomal fragments	Large subunit	Prokaryotic (50S subunit)	(Haloarcula marismortui ) [TaxId: 2238 ],	SCOPe (2.08)
F [auth D]	d1c04d_	Low resolution protein structures	Ribosome and ribosomal fragments	Ribosome and ribosomal fragments	Large subunit	Prokaryotic (50S subunit)	(Haloarcula marismortui ) [TaxId: 2238 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
C [auth A]	SCOP2B Superfamily	Nucleic acid-binding proteins	8041953	3000135	SCOP2B (2022-06-29)
C [auth A]	SCOP2B Superfamily	Translation proteins SH3-like KOW motif containing domain	8041672	3000334	SCOP2B (2022-06-29)
D [auth B]	SCOP2B Superfamily	Ribosomal protein L6	8036508	3000724	SCOP2B (2022-06-29)
D [auth B]	SCOP2B Superfamily	Ribosomal protein L6	8036504	3000724	SCOP2B (2022-06-29)
E [auth C]	SCOP2B Superfamily	Ribosomal protein L11 C-terminal domain	8039481	3001186	SCOP2B (2022-06-29)
F [auth D]	SCOP2B Superfamily	50S Ribosomal protein L14-like	8041752	3000433	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C [auth A]	PF00181	e1c04A1	A: beta barrels	X: OB-fold	H: Nucleic acid-binding proteins (From Topology)	T: Nucleic acid-binding proteins	F: PF00181	ECOD (1.6)
C [auth A]	PF03947	e1c04A2	A: beta barrels	X: SH3	H: SH3	T: SH3	F: PF03947	ECOD (1.6)
D [auth B]	PF00347	e1c04B1	A: a+b two layers	X: Ribosomal protein L6 (From Topology)	H: Ribosomal protein L6 (From Topology)	T: Ribosomal protein L6	F: PF00347	ECOD (1.6)
E [auth C]	PF00298	e1c04C1	A: alpha arrays	X: HTH	H: HTH	T: Ribosomal protein L11, C-terminal domain	F: PF00298	ECOD (1.6)
F [auth D]	PF00238	e1c04D1	A: beta barrels	X: Ribosomal protein L14-like	H: Ribosomal protein L14-related (From Topology)	T: Ribosomal protein L14-related	F: PF00238	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
C [auth A]	PF03947	Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)	Ribosomal Proteins L2, C-terminal domain	-	Domain
C [auth A]	PF00181	Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)	Ribosomal Proteins L2, RNA binding domain	-	Domain
D [auth B]	PF00347	Ribosomal protein L6 (Ribosomal_L6)	Ribosomal protein L6	-	Domain
E [auth C]	PF00298	Ribosomal protein L11, RNA binding domain (Ribosomal_L11)	Ribosomal protein L11, RNA binding domain	-	Domain
F [auth D]	PF00238	Ribosomal protein L14p/L23e (Ribosomal_L14)	Ribosomal protein L14p/L23e	-	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B [auth F]	23S RRNA FRAGMENT	-	-	-
C [auth A]	RIBOSOMAL PROTEIN L2	RNA binding binding organic cyclic compound binding rRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome transferase activity catalytic activity	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process organic substance metabolic process biosynthetic process organic substance biosynthetic process metabolic process cellular process protein metabolic process organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process organic substance metabolic process biosynthetic process organic substance biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex intracellular anatomical structure cellular anatomical entity ribosomal subunit intracellular organelle organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome large ribosomal subunit non-membrane-bounded organelle
D [auth B]	RIBOSOMAL PROTEIN L6	structural molecule activity structural constituent of ribosome RNA binding binding organic cyclic compound binding rRNA binding nucleic acid binding	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process organic substance metabolic process biosynthetic process organic substance biosynthetic process metabolic process cellular process protein metabolic process organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process organic substance metabolic process biosynthetic process organic substance biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex ribonucleoprotein complex intracellular organelle intracellular anatomical structure organelle intracellular non-membrane-bounded organelle ribosome cellular anatomical entity non-membrane-bounded organelle
E [auth C]	RIBOSOMAL PROTEIN L11	DNA binding binding organic cyclic compound binding nucleic acid binding RNA binding rRNA binding large ribosomal subunit rRNA binding structural molecule activity structural constituent of ribosome	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process organic substance metabolic process biosynthetic process organic substance biosynthetic process metabolic process cellular process protein metabolic process organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process organic substance metabolic process biosynthetic process organic substance biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex ribonucleoprotein complex intracellular organelle intracellular anatomical structure organelle intracellular non-membrane-bounded organelle ribosome cellular anatomical entity non-membrane-bounded organelle
F [auth D]	RIBOSOMAL PROTEIN L14	structural molecule activity structural constituent of ribosome RNA binding binding organic cyclic compound binding rRNA binding nucleic acid binding	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process organic substance metabolic process biosynthetic process organic substance biosynthetic process metabolic process cellular process protein metabolic process organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process organic substance metabolic process biosynthetic process organic substance biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex intracellular anatomical structure cellular anatomical entity ribosomal subunit intracellular organelle organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome large ribosomal subunit non-membrane-bounded organelle
A [auth E]	23S RRNA FRAGMENT	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C [auth A]	IPR022669	Large ribosomal subunit protein uL2, C-terminal	Domain
C [auth A]	IPR014722	Large ribosomal subunit protein uL2, domain 2	Homologous Superfamily
C [auth A]	IPR008991	Translation protein SH3-like domain superfamily	Homologous Superfamily
C [auth A]	IPR022671	Large ribosomal subunit protein uL2, conserved site	Conserved Site
C [auth A]	IPR005880	Large ribosomal subunit protein uL2, bacterial/organellar-type	Family
C [auth A]	IPR012340	Nucleic acid-binding, OB-fold	Homologous Superfamily
C [auth A]	IPR022666	Large ribosomal subunit protein uL2, RNA-binding domain	Domain
C [auth A]	IPR014726	Large ribosomal subunit protein uL2, domain 3	Homologous Superfamily
C [auth A]	IPR002171	Large ribosomal subunit protein uL2	Family
D [auth B]	IPR020040	Large ribosomal subunit protein uL6, alpha-beta domain	Domain
D [auth B]	IPR036789	Large ribosomal subunit protein uL6-like, alpha-beta domain superfamily	Homologous Superfamily
D [auth B]	IPR000702	Large ribosomal subunit protein uL6-like	Family
D [auth B]	IPR019906	Large ribosomal subunit protein uL6, bacterial-type	Family
D [auth B]	IPR002358	Large ribosomal subunit protein uL6, conserved site	Conserved Site
E [auth C]	IPR020785	Large ribosomal subunit protein uL11, conserved site	Conserved Site
E [auth C]	IPR020783	Large ribosomal subunit protein uL11, C-terminal	Domain
E [auth C]	IPR000911	Ribosomal protein uL11	Family
E [auth C]	IPR006519	Large ribosomal subunit protein uL11, bacterial-type	Family
E [auth C]	IPR020784	Large ribosomal subunit protein uL11, N-terminal	Domain
E [auth C]	IPR036769	Large ribosomal subunit protein uL11, C-terminal domain superfamily	Homologous Superfamily
E [auth C]	IPR036796	Large ribosomal subunit protein uL11, N-terminal domain superfamily	Homologous Superfamily
F [auth D]	IPR005745	Large ribosomal subunit protein uL14, bacterial-type	Family
F [auth D]	IPR036853	Large ribosomal subunit protein uL14 superfamily	Homologous Superfamily
F [auth D]	IPR000218	Large ribosomal subunit protein uL14	Family
F [auth D]	IPR019972	Large ribosomal subunit protein uL14, conserved site	Conserved Site