Download MendeleyCrystal Structure of a Thermotoga maritima Hfq homolog
Patterson, J., Randolph, P.S., Mura, C.To be published.
4Y91
Crystal Structure of a Thermotoga maritima Hfq homolog
- PDB DOI: https://doi.org/10.2210/pdb4Y91/pdb
- NAKB: 4Y91
- Classification: RNA BINDING PROTEIN/RNA
- Organism(s): Thermotoga maritima MSB8, synthetic construct
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2015-02-16 Released: 2016-03-16
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.66 Å
- R-Value Free: 0.246
- R-Value Work: 0.184
- R-Value Observed: 0.187
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| RNA-binding protein Hfq | 95 | Thermotoga maritima MSB8 | Mutation(s): 0 Gene Names: hfq, TM_0526 |  | |
UniProt | |||||
Find proteins for Q9WYZ6 (Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)) Explore Q9WYZ6 Go to UniProtKB: Q9WYZ6 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9WYZ6 | ||||
Sequence AnnotationsExpand | |||||
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Find similar nucleic acids by: Sequence | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Length | Organism | Image | |
| RNA (5'-R(P*UP*UP*UP*UP*UP*U)-3') | M [auth N], N [auth O] | 6 | synthetic construct |  | |
Sequence AnnotationsExpand | |||||
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Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.66 Å
- R-Value Free: 0.246
- R-Value Work: 0.184
- R-Value Observed: 0.187
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 39.08 | α = 90 |
| b = 133.5 | β = 90 |
| c = 206.18 | γ = 90 |
| Software Name | Purpose |
|---|---|
| XSCALE | data scaling |
| PHASER | phasing |
| PHENIX | refinement |
| PDB_EXTRACT | data extraction |
| XDS | data reduction |
Entry History
Deposition Data
- Released Date: 2016-03-16 Deposition Author(s): Randolph, P.S., Patterson, J., Mura, C.
Revision History (Full details and data files)
- Version 1.0: 2016-03-16
Type: Initial release - Version 1.1: 2017-10-11
Changes: Advisory, Data collection, Derived calculations, Experimental preparation - Version 1.2: 2023-09-27
Changes: Advisory, Data collection, Database references, Refinement description
