3LDR
Crystal structure of fructosyltransferase (D191A) from A. japonicus in complex with 1-Kestose
- PDB DOI: https://doi.org/10.2210/pdb3LDR/pdb
- Classification: HYDROLASE
- Organism(s): Aspergillus japonicus
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2010-01-13 Released: 2010-05-12
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.255
- R-Value Work: 0.215
- R-Value Observed: 0.220
wwPDB Validation 3D Report Full Report
This is version 2.1 of the entry. See complete history.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Fructosyltransferase | 634 | Aspergillus japonicus | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for Q1W3Z7 (Aspergillus japonicus) Explore Q1W3Z7 Go to UniProtKB: Q1W3Z7 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q1W3Z7 | ||||
Sequence AnnotationsExpand | |||||
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Oligosaccharides
Biologically Interesting Molecules (External Reference) 1 Unique
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| ID | Chains | Name | Type/Class | 2D Diagram | 3D Interactions |
| PRD_900029 Query on PRD_900029 | B | 1-kestose | Oligosaccharide / Nutrient |  | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.255
- R-Value Work: 0.215
- R-Value Observed: 0.220
- Space Group: P 21 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 99.076 | α = 90 |
| b = 110.431 | β = 90 |
| c = 65.881 | γ = 90 |
| Software Name | Purpose |
|---|---|
| ADSC | data collection |
| CNS | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| CNS | phasing |
Entry History
Deposition Data
- Released Date: 2010-05-12 Deposition Author(s): Chuankhayan, P., Chen, C.J., Chiang, C.M.
Revision History (Full details and data files)
- Version 1.0: 2010-05-12
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2011-08-24
Changes: Non-polymer description - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Atomic model, Data collection, Derived calculations, Non-polymer description, Structure summary - Version 2.1: 2024-03-20
Changes: Data collection, Database references, Structure summary
