Download MendeleyStructure of human adenovirus 2 protease with cofactor pVIC
Davis, R.R., Martinez, P., Hollis, T.To be published.
5FGY
Structure of human adenovirus 2 protease with cofactor pVIC
- PDB DOI: https://doi.org/10.2210/pdb5FGY/pdb
- Classification: HYDROLASE
- Organism(s): Human adenovirus 2, Homo sapiens
- Expression System: Escherichia coli BL21
- Mutation(s): No
- Deposited: 2015-12-21 Released: 2016-01-13
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.197
- R-Value Work: 0.176
- R-Value Observed: 0.177
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Protease | 204 | Human adenovirus 2 | Mutation(s): 0 Gene Names: L3 EC: 3.4.22.39 |  | |
UniProt | |||||
Find proteins for P03252 (Human adenovirus C serotype 2) Explore P03252 Go to UniProtKB: P03252 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P03252 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by: Sequence | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| pVIC | 11 | Homo sapiens | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for P03274 (Human adenovirus C serotype 2) Explore P03274 Go to UniProtKB: P03274 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P03274 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.197
- R-Value Work: 0.176
- R-Value Observed: 0.177
- Space Group: P 61
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 112.42 | α = 90 |
| b = 112.42 | β = 90 |
| c = 49.5 | γ = 120 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| Coot | model building |
| MOLREP | phasing |
| d*TREK | data scaling |
| d*TREK | data reduction |
Entry History
Deposition Data
- Released Date: 2016-01-13 Deposition Author(s): Davis, R.R., Martinez, P., Hollis, T.
Revision History (Full details and data files)
- Version 1.0: 2016-01-13
Type: Initial release - Version 1.1: 2023-09-27
Changes: Data collection, Database references, Derived calculations, Refinement description
