Download MendeleyStructure of the human TSG101-UEV Domain in complex with the PTAP motif of the p19 gag protein of the Human T-cell Leukemia type I virus
Camara-Artigas, A., Bacarizo, J.To be published.
4ZNY
Structure of the human TSG101-UEV Domain in complex with the PTAP motif of the p19 gag protein of the Human T-cell Leukemia type I virus
- PDB DOI: https://doi.org/10.2210/pdb4ZNY/pdb
- Classification: PROTEIN TRANSPORT
- Organism(s): Homo sapiens, Human T-cell leukemia virus type I
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2015-05-05 Released: 2016-06-29
- Funding Organization(s): MINECO
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.40 Å
- R-Value Free: 0.243
- R-Value Work: 0.230
- R-Value Observed: 0.231
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Tumor susceptibility gene 101 protein | 142 | Homo sapiens | Mutation(s): 0 Gene Names: TSG101 |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q99816 (Homo sapiens) Explore Q99816 Go to UniProtKB: Q99816 | |||||
PHAROS: Q99816 GTEx: ENSG00000074319 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q99816 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by: Sequence | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| T-cell leukemia virus type I, partial gag gene; HTLV1 (human T-lymphotropic virus type I) | 10 | Human T-cell leukemia virus type I | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for P14078 (Human T-cell leukemia virus 1 (isolate Caribbea HS-35 subtype A)) Explore P14078 Go to UniProtKB: P14078 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P14078 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | C [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.40 Å
- R-Value Free: 0.243
- R-Value Work: 0.230
- R-Value Observed: 0.231
- Space Group: C 2 2 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 78.622 | α = 90 |
| b = 119.743 | β = 90 |
| c = 41.641 | γ = 90 |
| Software Name | Purpose |
|---|---|
| Aimless | data scaling |
| PHASER | phasing |
| PHENIX | refinement |
| PDB_EXTRACT | data extraction |
| XDS | data reduction |
Entry History & Funding Information
Deposition Data
- Released Date: 2016-06-29 Deposition Author(s): Camara-Artigas, A., Bacarizo, J.
| Funding Organization | Location | Grant Number |
|---|---|---|
| MINECO | Spain | BIO2012-39922-C02-02 |
Revision History (Full details and data files)
- Version 1.0: 2016-06-29
Type: Initial release - Version 1.1: 2024-01-10
Changes: Data collection, Database references, Refinement description
