4V5W

Grapevine Fanleaf virus

PDB DOI: https://doi.org/10.2210/pdb4V5W/pdb
Entry: 4V5W supersedes: 2YI2, 2YI3, 2YI4

Classification: VIRUS
Organism(s): Grapevine fanleaf virus
Mutation(s): No

Deposited: 2011-05-10 Released: 2014-07-09
Deposition Author(s): Schellenberger, P., Demangeat, G., Ritzenthaler, C., Lorber, B., Sauter, C.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.70 Å
R-Value Free: 0.247
R-Value Work: 0.232
R-Value Observed: 0.232

wwPDB Validation 3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

Exploiting Protein Engineering and Crystal Polymorphism for Successful X-Ray Structure Determination

Bonnefond, L., Schellenberger, P., Basquin, J., Demangeat, G., Ritzenthaler, C., Chenevert, R., Balg, C., Frugier, M., Rudinger-Thirion, J., Giege, R., Lorber, B., Sauter, C.

(2011) Cryst Growth Des 11: 4334

DOI: https://doi.org/10.1021/CG101468P

Macromolecule Content

Total Structure Weight: 3,364.39 kDa
Atom Count: 237,060
Modelled Residue Count: 30,240
Deposited Residue Count: 30,240
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
COAT PROTEIN	A [auth AA] AA [auth BG] AB [auth CM] B [auth AB] BA [auth BH] A [auth AA], AA [auth BG], AB [auth CM], B [auth AB], BA [auth BH], BB [auth CN], C [auth AC], CA [auth BI], CB [auth CO], D [auth AD], DA [auth BJ], DB [auth CP], E [auth AE], EA [auth BK], EB [auth CQ], F [auth AF], FA [auth BL], FB [auth CR], G [auth AG], GA [auth BM], GB [auth CS], H [auth AH], HA [auth BN], HB [auth CT], I [auth AI], IA [auth BO], J [auth AJ], JA [auth BP], K [auth AK], KA [auth BQ], L [auth AL], LA [auth BR], M [auth AM], MA [auth BS], N [auth AN], NA [auth BT], O [auth AO], OA [auth CA], P [auth AP], PA [auth CB], Q [auth AQ], QA [auth CC], R [auth AR], RA [auth CD], S [auth AS], SA [auth CE], T [auth AT], TA [auth CF], U [auth BA], UA [auth CG], V [auth BB], VA [auth CH], W [auth BC], WA [auth CI], X [auth BD], XA [auth CJ], Y [auth BE], YA [auth CK], Z [auth BF], ZA [auth CL]	504	Grapevine fanleaf virus	Mutation(s): 0
UniProt
Find proteins for P18474 (Grapevine fanleaf virus) Explore P18474 Go to UniProtKB: P18474
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P18474
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 3.70 Å
R-Value Free: 0.247
R-Value Work: 0.232
R-Value Observed: 0.232
Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 283.6	α = 90
b = 295.5	β = 91.6
c = 394.3	γ = 90

Software Package:

Software Name	Purpose
AMoRE	model building
PHENIX	refinement
XDS	data reduction
XSCALE	data scaling
AMoRE	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2014-07-09

Deposition Author(s):

This entry supersedes: 2YI2, 2YI3, 2YI4

Revision History (Full details and data files)

Version 1.0: 2014-07-09
Type: Initial release
Version 1.1: 2014-12-10
Changes: Other
Version 1.2: 2019-05-08
Changes: Data collection, Experimental preparation, Other
Version 1.3: 2024-01-10
Changes: Data collection, Database references, Refinement description

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Help and Resources

4V5W

Grapevine Fanleaf virus

Exploiting Protein Engineering and Crystal Polymorphism for Successful X-Ray Structure Determination

Entity ID: 1

UniProt

Entity Groups

Sequence Annotations

Expand

Experimental Data

Structure Validation

Deposition Data

Revision History (Full details and data files)