february 2009 Molecule of the Month by David Goodsell  |  Previous Features
doi: 10.2210/rcsb_pdb/mom_2009_2

Auxin and TIR1 Ubiquitin Ligase

Plants, like animals, have hormones that deliver chemical messages between distant cells. Charles Darwin and his son discovered this over a century ago--they noticed that if they shined a light on the tips of grass shoots, the stems bend to bring the entire shoot towards the light. Somehow, a message was being sent from the tip down to the stem. You might also have observed the action of hormonal signals in plants: when you prune a tree to make it more bushy, you are modifying the traffic of plant hormones. Both of these effects are caused by the phytohormone auxin.

Patterning Plants

Auxin is made by cells in the tips of plants, and then it is transported throughout the rest of the plant. It is essential for life of the plant, and the plant quickly dies if deprived of it. Auxin controls many functions, including proper patterning of leaves on stems and response to light and gravity. For instance, auxin controls the branching of plants. When you cut off the tip of a growing plant, you remove the major source of auxin, and the resulting lower levels of auxin cause the remaining parts to branch out instead of growing straight up.

Auxin in Action

The ultimate effect of auxin is to regulate a collection of genes involved in cell division, elongation and differentiation. However, auxin does not appear to act directly on repressors or activators of these genes--it uses a more circuitous mechanism. Instead, auxin binds to a class of ubiquitin ligases, such as the TIR1 ubiquitin ligase shown here from PDB entry 2p1p. These enzymes assist with the destruction of proteins by the ubiquitin/proteasome system. Auxin binds to the ligase and promotes the ubiquitination of a series of regulatory proteins, termed Aux/IAA proteins. When these are destroyed, they allow a series of auxin response factors (ARF) to interact directly with the genes.

Commercial Applications

Auxin is used in commercial horticulture to modify plant growth. The major auxin, IAA, is not stable enough for commercial use, but there are many other variants that are effective substitutes. For instance, synthetic auxins may be sprayed on fruit trees to delay the dropping of fruit, resulting in larger and sweeter fruit. When used in large quantities, synthetic auxins are effective herbicides, killing primarily broad-leaved plants but having less effect on grasses. In this way, they are used to kill weeds in cereal crops, sugarcane and lawns. Two synthetic auxins, together nicknamed Agent Orange, were used during the Vietnam War in massive defoliation efforts. Dioxin, an impurity in this herbicide, has been implicated in the health problems of Vietnam veterans. You can explore the recognition of the natural auxin IAA and one of these synthetic auxin compounds at Proteopedia.

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Next: Auxin Reserves

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