0.013701
0.007910
0.000000
-0.000000
0.015821
0.000000
0.000000
-0.000000
0.007844
0.00000
0.00000
0.00000
Zhang, H.
Ballard, J.
Vigers, G.P.A.
Brandhuber, B.J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
120.00
72.988
72.988
127.480
C37 H51 N5 O9 S
741.894
(2R,6S,13aR,14aR,16aS)-6-{[(cyclopentyloxy)carbonyl]amino}-14a-[(cyclopropylsulfonyl)carbamoyl]-5,16-dioxooctadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecin-2-yl 3,4-dihydroisoquinoline-2(1H)-carboxylate
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
N
1
N
C
N
2
N
O
N
3
N
O
N
4
N
C
N
5
N
C
N
6
N
C
N
7
N
C
N
8
N
C
N
9
N
C
N
10
S
C
N
11
N
O
N
12
N
N
N
13
N
C
N
14
N
C
N
15
N
C
N
16
N
C
N
17
N
C
N
18
N
C
N
19
R
C
N
20
R
C
N
21
N
N
N
22
N
O
N
23
N
C
N
24
N
C
N
25
N
C
N
26
N
N
N
27
N
S
N
28
N
O
N
29
N
O
N
30
N
C
N
31
N
C
N
32
N
C
N
33
N
N
N
34
S
C
N
35
N
C
N
36
N
O
N
37
N
C
N
38
R
C
N
39
N
C
N
40
N
O
N
41
N
C
N
42
N
N
N
43
N
O
N
44
N
C
Y
45
N
C
Y
46
N
C
N
47
N
C
N
48
N
C
Y
49
N
C
Y
50
N
C
Y
51
N
C
Y
52
N
C
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
N
N
105
S
C
N
106
N
C
N
107
N
O
N
108
N
C
N
109
N
O
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
N
N
118
S
C
N
119
N
C
N
120
N
O
N
121
N
C
N
122
N
C
N
123
N
C
N
124
N
N
N
125
N
C
N
126
N
N
N
127
N
N
N
128
N
O
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
N
N
145
S
C
N
146
N
C
N
147
N
O
N
148
N
C
N
149
N
C
N
150
N
O
N
151
N
N
N
152
N
O
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
N
C
N
166
N
C
N
167
N
O
N
168
N
O
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
N
N
178
R
C
N
179
N
C
N
180
N
O
N
181
N
C
N
182
N
S
N
183
N
O
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
N
N
192
S
C
N
193
N
C
N
194
N
O
N
195
N
C
N
196
N
C
N
197
N
C
N
198
N
O
N
199
N
N
N
200
N
O
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
N
N
212
S
C
N
213
N
C
N
214
N
O
N
215
N
C
N
216
N
C
N
217
N
C
N
218
N
O
N
219
N
O
N
220
N
O
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
N
C
N
232
N
C
N
233
N
O
N
234
N
O
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
N
N
241
S
C
N
242
N
C
N
243
N
O
N
244
N
C
Y
245
N
C
Y
246
N
N
Y
247
N
C
Y
248
N
C
Y
249
N
N
N
250
N
O
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
N
N
265
S
C
N
266
N
C
N
267
N
O
N
268
S
C
N
269
N
C
N
270
N
C
N
271
N
C
N
272
N
O
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
N
N
287
S
C
N
288
N
C
N
289
N
O
N
290
N
C
N
291
N
C
N
292
N
C
N
293
N
C
N
294
N
O
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
N
N
309
S
C
N
310
N
C
N
311
N
O
N
312
N
C
N
313
N
C
N
314
N
C
N
315
N
C
N
316
N
N
N
317
N
O
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
N
N
334
S
C
N
335
N
C
N
336
N
O
N
337
N
C
N
338
N
C
N
339
N
S
N
340
N
C
N
341
N
O
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
N
N
354
S
C
N
355
N
C
N
356
N
O
N
357
N
C
Y
358
N
C
Y
359
N
C
Y
360
N
C
Y
361
N
C
Y
362
N
C
Y
363
N
C
N
364
N
O
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
N
N
377
S
C
N
378
N
C
N
379
N
O
N
380
N
C
N
381
N
C
N
382
N
C
N
383
N
O
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
N
N
394
S
C
N
395
N
C
N
396
N
O
N
397
N
C
N
398
N
O
N
399
N
O
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
N
N
408
S
C
N
409
N
C
N
410
N
O
N
411
R
C
N
412
N
O
N
413
N
C
N
414
N
O
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
N
N
425
S
C
N
426
N
C
N
427
N
O
N
428
N
C
Y
429
N
C
Y
430
N
C
Y
431
N
C
Y
432
N
N
Y
433
N
C
Y
434
N
C
Y
435
N
C
Y
436
N
C
Y
437
N
C
N
438
N
O
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
N
N
452
S
C
N
453
N
C
N
454
N
O
N
455
N
C
Y
456
N
C
Y
457
N
C
Y
458
N
C
Y
459
N
C
Y
460
N
C
Y
461
N
C
N
462
N
O
N
463
N
O
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
H
N
475
N
N
N
476
S
C
N
477
N
C
N
478
N
O
N
479
N
C
N
480
N
C
N
481
N
C
N
482
N
O
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
H
N
487
N
H
N
488
N
H
N
489
N
H
N
490
N
H
N
491
N
H
N
492
N
H
N
493
N
H
N
494
N
ZN
N
1
N
doub
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
doub
N
6
N
sing
N
7
N
sing
N
8
N
doub
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
doub
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
doub
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
Y
44
N
doub
Y
45
N
sing
N
46
N
sing
Y
47
N
sing
Y
48
N
doub
N
49
N
doub
N
50
N
sing
Y
51
N
doub
Y
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
doub
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
doub
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
doub
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
doub
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
doub
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
doub
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
doub
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
doub
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
doub
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
doub
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
doub
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
doub
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
doub
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
Y
249
N
sing
Y
250
N
doub
Y
251
N
doub
N
252
N
sing
Y
253
N
sing
N
254
N
sing
Y
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
doub
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
doub
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
doub
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
doub
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
doub
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
Y
357
N
doub
Y
358
N
sing
Y
359
N
sing
N
360
N
sing
Y
361
N
doub
N
362
N
sing
Y
363
N
doub
N
364
N
sing
Y
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
doub
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
doub
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
doub
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
doub
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
Y
426
N
doub
Y
427
N
sing
Y
428
N
sing
N
429
N
sing
Y
430
N
doub
Y
431
N
sing
Y
432
N
sing
N
433
N
sing
Y
434
N
sing
Y
435
N
doub
N
436
N
sing
Y
437
N
doub
N
438
N
sing
Y
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
doub
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
Y
454
N
doub
Y
455
N
sing
Y
456
N
sing
N
457
N
sing
Y
458
N
doub
N
459
N
sing
Y
460
N
doub
N
461
N
sing
Y
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
doub
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
sing
US
J.Med.Chem.
JMCMAR
0151
0022-2623
57
1753
1769
10.1021/jm400164c
23672640
Discovery of Danoprevir (ITMN-191/R7227), a Highly Selective and Potent Inhibitor of Hepatitis C Virus (HCV) NS3/4A Protease.
2014
10.2210/pdb4ktc/pdb
pdb_00004ktc
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
Confocal mirrors
IMAGE PLATE
2005-10-02
RIGAKU RAXIS IV++
Confocal mirrors
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU FR-E+ SUPERBRIGHT
20024.881
Serine protease NS3
3.4.21.98, 3.6.1.15, 3.6.4.13
2
man
polymer
1686.097
NS4A peptide
2
syn
polymer
65.409
ZINC ION
2
syn
non-polymer
741.894
(2R,6S,13aR,14aR,16aS)-6-{[(cyclopentyloxy)carbonyl]amino}-14a-[(cyclopropylsulfonyl)carbamoyl]-5,16-dioxooctadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecin-2-yl 3,4-dihydroisoquinoline-2(1H)-carboxylate
2
syn
non-polymer
18.015
water
39
nat
water
Hepacivirin, NS3P, p70
no
no
GSMAPITAYSQQTRGLLGCIITSLTGRDKNQVDGEVQVLSTATQSFLATCVNGVCWTVYHGAGSKTLAGPKGPITQMYTN
VDQDLVGWPAPPGARSMTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLLSPRPVSYLKGSSGGPLLCPSGHVVGIFRAA
VCTRGVAKAVDFIPVESMETTMRSPVFTDN
GSMAPITAYSQQTRGLLGCIITSLTGRDKNQVDGEVQVLSTATQSFLATCVNGVCWTVYHGAGSKTLAGPKGPITQMYTN
VDQDLVGWPAPPGARSMTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLLSPRPVSYLKGSSGGPLLCPSGHVVGIFRAA
VCTRGVAKAVDFIPVESMETTMRSPVFTDN
A,C
polypeptide(L)
no
no
KGSVVIVGRIILSGRK
KGSVVIVGRIILSGRK
B,D
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
HCV
sample
11116
Hepatitis C virus (isolate Japanese)
562
Escherichia coli
1
2.26
45.51
VAPOR DIFFUSION, HANGING DROP
6.2
18% PEG3350, 10% Glycerol, 1M MgCl2, 100mM Bis-Tris pH 6.2 and 10mM DTT at 20C. , VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Database references
Data collection
Database references
Derived calculations
Refinement description
1
0
2013-08-07
1
1
2014-03-26
1
2
2023-09-20
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_asym_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_label_asym_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2013-05-20
REL
REL
ZN
ZINC ION
1X3
(2R,6S,13aR,14aR,16aS)-6-{[(cyclopentyloxy)carbonyl]amino}-14a-[(cyclopropylsulfonyl)carbamoyl]-5,16-dioxooctadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecin-2-yl 3,4-dihydroisoquinoline-2(1H)-carboxylate
HOH
water
Solid-phase peptide synthesis
32630
Synthetic
sample
1DY8
PDB ENTRY 1DY8
PDB
experimental model
Inhibitor
(2R,6S,13AR,14AR,16AS)-6-{[(CYCLOPENTYLOXY)CARBONYL]AMINO}-14A-[(CYCLOPROPYLSULFONYL)CARBAMOYL]-5,16-DIOXOOCTADECAHYDROCYCLOPROPA[E]PYRROLO[1,2-A][1,4]DIAZACYCLOPENTADECIN-2-YL 3,4-DIHYDROISOQUINOLINE-2(1H)-CARBOXYLATE
Cyclic peptide
ZN
1
3
ZN
ZN
201
A
SM1
1
4
1X3
1X3
202
A
ZN
2
3
ZN
ZN
201
C
SM1
2
4
1X3
1X3
202
C
HOH
3
5
HOH
HOH
301
A
HOH
5
5
HOH
HOH
302
A
HOH
8
5
HOH
HOH
303
A
HOH
11
5
HOH
HOH
304
A
HOH
13
5
HOH
HOH
305
A
HOH
15
5
HOH
HOH
306
A
HOH
16
5
HOH
HOH
307
A
HOH
20
5
HOH
HOH
308
A
HOH
24
5
HOH
HOH
309
A
HOH
25
5
HOH
HOH
310
A
HOH
26
5
HOH
HOH
311
A
HOH
33
5
HOH
HOH
312
A
HOH
34
5
HOH
HOH
313
A
HOH
35
5
HOH
HOH
314
A
HOH
37
5
HOH
HOH
315
A
HOH
38
5
HOH
HOH
316
A
HOH
1
5
HOH
HOH
301
C
HOH
4
5
HOH
HOH
302
C
HOH
6
5
HOH
HOH
303
C
HOH
7
5
HOH
HOH
304
C
HOH
9
5
HOH
HOH
305
C
HOH
12
5
HOH
HOH
306
C
HOH
14
5
HOH
HOH
307
C
HOH
17
5
HOH
HOH
308
C
HOH
18
5
HOH
HOH
309
C
HOH
19
5
HOH
HOH
310
C
HOH
21
5
HOH
HOH
311
C
HOH
22
5
HOH
HOH
312
C
HOH
23
5
HOH
HOH
313
C
HOH
27
5
HOH
HOH
314
C
HOH
28
5
HOH
HOH
315
C
HOH
29
5
HOH
HOH
316
C
HOH
30
5
HOH
HOH
317
C
HOH
31
5
HOH
HOH
318
C
HOH
32
5
HOH
HOH
319
C
HOH
39
5
HOH
HOH
320
C
HOH
2
5
HOH
HOH
301
D
HOH
10
5
HOH
HOH
302
D
HOH
36
5
HOH
HOH
303
D
n
1
-2
A
n
2
-1
A
n
3
0
A
ALA
1
n
4
ALA
1
A
PRO
2
n
5
PRO
2
A
ILE
3
n
6
ILE
3
A
THR
4
n
7
THR
4
A
ALA
5
n
8
ALA
5
A
TYR
6
n
9
TYR
6
A
SER
7
n
10
SER
7
A
GLN
8
n
11
GLN
8
A
GLN
9
n
12
GLN
9
A
THR
10
n
13
THR
10
A
ARG
11
n
14
ARG
11
A
GLY
12
n
15
GLY
12
A
LEU
13
n
16
LEU
13
A
LEU
14
n
17
LEU
14
A
GLY
15
n
18
GLY
15
A
CYS
16
n
19
CYS
16
A
ILE
17
n
20
ILE
17
A
ILE
18
n
21
ILE
18
A
THR
19
n
22
THR
19
A
SER
20
n
23
SER
20
A
LEU
21
n
24
LEU
21
A
THR
22
n
25
THR
22
A
GLY
23
n
26
GLY
23
A
ARG
24
n
27
ARG
24
A
ASP
25
n
28
ASP
25
A
LYS
26
n
29
LYS
26
A
ASN
27
n
30
ASN
27
A
GLN
28
n
31
GLN
28
A
VAL
29
n
32
VAL
29
A
ASP
30
n
33
ASP
30
A
GLY
31
n
34
GLY
31
A
GLU
32
n
35
GLU
32
A
VAL
33
n
36
VAL
33
A
GLN
34
n
37
GLN
34
A
VAL
35
n
38
VAL
35
A
LEU
36
n
39
LEU
36
A
SER
37
n
40
SER
37
A
THR
38
n
41
THR
38
A
ALA
39
n
42
ALA
39
A
THR
40
n
43
THR
40
A
GLN
41
n
44
GLN
41
A
SER
42
n
45
SER
42
A
PHE
43
n
46
PHE
43
A
LEU
44
n
47
LEU
44
A
ALA
45
n
48
ALA
45
A
THR
46
n
49
THR
46
A
CYS
47
n
50
CYS
47
A
VAL
48
n
51
VAL
48
A
ASN
49
n
52
ASN
49
A
GLY
50
n
53
GLY
50
A
VAL
51
n
54
VAL
51
A
CYS
52
n
55
CYS
52
A
TRP
53
n
56
TRP
53
A
THR
54
n
57
THR
54
A
VAL
55
n
58
VAL
55
A
TYR
56
n
59
TYR
56
A
HIS
57
n
60
HIS
57
A
GLY
58
n
61
GLY
58
A
ALA
59
n
62
ALA
59
A
GLY
60
n
63
GLY
60
A
SER
61
n
64
SER
61
A
LYS
62
n
65
LYS
62
A
THR
63
n
66
THR
63
A
LEU
64
n
67
LEU
64
A
ALA
65
n
68
ALA
65
A
GLY
66
n
69
GLY
66
A
PRO
67
n
70
PRO
67
A
LYS
68
n
71
LYS
68
A
GLY
69
n
72
GLY
69
A
PRO
70
n
73
PRO
70
A
ILE
71
n
74
ILE
71
A
THR
72
n
75
THR
72
A
GLN
73
n
76
GLN
73
A
MET
74
n
77
MET
74
A
TYR
75
n
78
TYR
75
A
THR
76
n
79
THR
76
A
ASN
77
n
80
ASN
77
A
VAL
78
n
81
VAL
78
A
ASP
79
n
82
ASP
79
A
GLN
80
n
83
GLN
80
A
ASP
81
n
84
ASP
81
A
LEU
82
n
85
LEU
82
A
VAL
83
n
86
VAL
83
A
GLY
84
n
87
GLY
84
A
TRP
85
n
88
TRP
85
A
PRO
86
n
89
PRO
86
A
ALA
87
n
90
ALA
87
A
PRO
88
n
91
PRO
88
A
PRO
89
n
92
PRO
89
A
GLY
90
n
93
GLY
90
A
ALA
91
n
94
ALA
91
A
ARG
92
n
95
ARG
92
A
SER
93
n
96
SER
93
A
MET
94
n
97
MET
94
A
THR
95
n
98
THR
95
A
PRO
96
n
99
PRO
96
A
CYS
97
n
100
CYS
97
A
THR
98
n
101
THR
98
A
CYS
99
n
102
CYS
99
A
GLY
100
n
103
GLY
100
A
SER
101
n
104
SER
101
A
SER
102
n
105
SER
102
A
ASP
103
n
106
ASP
103
A
LEU
104
n
107
LEU
104
A
TYR
105
n
108
TYR
105
A
LEU
106
n
109
LEU
106
A
VAL
107
n
110
VAL
107
A
THR
108
n
111
THR
108
A
ARG
109
n
112
ARG
109
A
HIS
110
n
113
HIS
110
A
ALA
111
n
114
ALA
111
A
ASP
112
n
115
ASP
112
A
VAL
113
n
116
VAL
113
A
ILE
114
n
117
ILE
114
A
PRO
115
n
118
PRO
115
A
VAL
116
n
119
VAL
116
A
ARG
117
n
120
ARG
117
A
ARG
118
n
121
ARG
118
A
ARG
119
n
122
ARG
119
A
GLY
120
n
123
GLY
120
A
ASP
121
n
124
ASP
121
A
SER
122
n
125
SER
122
A
ARG
123
n
126
ARG
123
A
GLY
124
n
127
GLY
124
A
SER
125
n
128
SER
125
A
LEU
126
n
129
LEU
126
A
LEU
127
n
130
LEU
127
A
SER
128
n
131
SER
128
A
PRO
129
n
132
PRO
129
A
ARG
130
n
133
ARG
130
A
PRO
131
n
134
PRO
131
A
VAL
132
n
135
VAL
132
A
SER
133
n
136
SER
133
A
TYR
134
n
137
TYR
134
A
LEU
135
n
138
LEU
135
A
LYS
136
n
139
LYS
136
A
GLY
137
n
140
GLY
137
A
SER
138
n
141
SER
138
A
SER
139
n
142
SER
139
A
GLY
140
n
143
GLY
140
A
GLY
141
n
144
GLY
141
A
PRO
142
n
145
PRO
142
A
LEU
143
n
146
LEU
143
A
LEU
144
n
147
LEU
144
A
CYS
145
n
148
CYS
145
A
PRO
146
n
149
PRO
146
A
SER
147
n
150
SER
147
A
GLY
148
n
151
GLY
148
A
HIS
149
n
152
HIS
149
A
VAL
150
n
153
VAL
150
A
VAL
151
n
154
VAL
151
A
GLY
152
n
155
GLY
152
A
ILE
153
n
156
ILE
153
A
PHE
154
n
157
PHE
154
A
ARG
155
n
158
ARG
155
A
ALA
156
n
159
ALA
156
A
ALA
157
n
160
ALA
157
A
VAL
158
n
161
VAL
158
A
CYS
159
n
162
CYS
159
A
THR
160
n
163
THR
160
A
ARG
161
n
164
ARG
161
A
GLY
162
n
165
GLY
162
A
VAL
163
n
166
VAL
163
A
ALA
164
n
167
ALA
164
A
LYS
165
n
168
LYS
165
A
ALA
166
n
169
ALA
166
A
VAL
167
n
170
VAL
167
A
ASP
168
n
171
ASP
168
A
PHE
169
n
172
PHE
169
A
ILE
170
n
173
ILE
170
A
PRO
171
n
174
PRO
171
A
VAL
172
n
175
VAL
172
A
GLU
173
n
176
GLU
173
A
SER
174
n
177
SER
174
A
MET
175
n
178
MET
175
A
n
179
176
A
n
180
177
A
n
181
178
A
n
182
179
A
n
183
180
A
n
184
181
A
n
185
182
A
n
186
183
A
n
187
184
A
n
188
185
A
n
189
186
A
n
190
187
A
n
1
220
B
GLY
221
n
2
GLY
221
B
SER
222
n
3
SER
222
B
VAL
223
n
4
VAL
223
B
VAL
224
n
5
VAL
224
B
ILE
225
n
6
ILE
225
B
VAL
226
n
7
VAL
226
B
GLY
227
n
8
GLY
227
B
ARG
228
n
9
ARG
228
B
ILE
229
n
10
ILE
229
B
ILE
230
n
11
ILE
230
B
LEU
231
n
12
LEU
231
B
SER
232
n
13
SER
232
B
GLY
233
n
14
GLY
233
B
n
15
234
B
n
16
235
B
n
1
-2
C
n
2
-1
C
n
3
0
C
ALA
1
n
4
ALA
1
C
PRO
2
n
5
PRO
2
C
ILE
3
n
6
ILE
3
C
THR
4
n
7
THR
4
C
ALA
5
n
8
ALA
5
C
TYR
6
n
9
TYR
6
C
SER
7
n
10
SER
7
C
GLN
8
n
11
GLN
8
C
GLN
9
n
12
GLN
9
C
THR
10
n
13
THR
10
C
ARG
11
n
14
ARG
11
C
GLY
12
n
15
GLY
12
C
LEU
13
n
16
LEU
13
C
LEU
14
n
17
LEU
14
C
GLY
15
n
18
GLY
15
C
CYS
16
n
19
CYS
16
C
ILE
17
n
20
ILE
17
C
ILE
18
n
21
ILE
18
C
THR
19
n
22
THR
19
C
SER
20
n
23
SER
20
C
LEU
21
n
24
LEU
21
C
THR
22
n
25
THR
22
C
GLY
23
n
26
GLY
23
C
ARG
24
n
27
ARG
24
C
ASP
25
n
28
ASP
25
C
LYS
26
n
29
LYS
26
C
ASN
27
n
30
ASN
27
C
GLN
28
n
31
GLN
28
C
VAL
29
n
32
VAL
29
C
ASP
30
n
33
ASP
30
C
GLY
31
n
34
GLY
31
C
GLU
32
n
35
GLU
32
C
VAL
33
n
36
VAL
33
C
GLN
34
n
37
GLN
34
C
VAL
35
n
38
VAL
35
C
LEU
36
n
39
LEU
36
C
SER
37
n
40
SER
37
C
THR
38
n
41
THR
38
C
ALA
39
n
42
ALA
39
C
THR
40
n
43
THR
40
C
GLN
41
n
44
GLN
41
C
SER
42
n
45
SER
42
C
PHE
43
n
46
PHE
43
C
LEU
44
n
47
LEU
44
C
ALA
45
n
48
ALA
45
C
THR
46
n
49
THR
46
C
CYS
47
n
50
CYS
47
C
VAL
48
n
51
VAL
48
C
ASN
49
n
52
ASN
49
C
GLY
50
n
53
GLY
50
C
VAL
51
n
54
VAL
51
C
CYS
52
n
55
CYS
52
C
TRP
53
n
56
TRP
53
C
THR
54
n
57
THR
54
C
VAL
55
n
58
VAL
55
C
TYR
56
n
59
TYR
56
C
HIS
57
n
60
HIS
57
C
GLY
58
n
61
GLY
58
C
ALA
59
n
62
ALA
59
C
GLY
60
n
63
GLY
60
C
SER
61
n
64
SER
61
C
LYS
62
n
65
LYS
62
C
THR
63
n
66
THR
63
C
LEU
64
n
67
LEU
64
C
ALA
65
n
68
ALA
65
C
GLY
66
n
69
GLY
66
C
PRO
67
n
70
PRO
67
C
LYS
68
n
71
LYS
68
C
GLY
69
n
72
GLY
69
C
PRO
70
n
73
PRO
70
C
ILE
71
n
74
ILE
71
C
THR
72
n
75
THR
72
C
GLN
73
n
76
GLN
73
C
MET
74
n
77
MET
74
C
TYR
75
n
78
TYR
75
C
THR
76
n
79
THR
76
C
ASN
77
n
80
ASN
77
C
VAL
78
n
81
VAL
78
C
ASP
79
n
82
ASP
79
C
GLN
80
n
83
GLN
80
C
ASP
81
n
84
ASP
81
C
LEU
82
n
85
LEU
82
C
VAL
83
n
86
VAL
83
C
GLY
84
n
87
GLY
84
C
TRP
85
n
88
TRP
85
C
PRO
86
n
89
PRO
86
C
ALA
87
n
90
ALA
87
C
PRO
88
n
91
PRO
88
C
PRO
89
n
92
PRO
89
C
GLY
90
n
93
GLY
90
C
ALA
91
n
94
ALA
91
C
ARG
92
n
95
ARG
92
C
SER
93
n
96
SER
93
C
MET
94
n
97
MET
94
C
THR
95
n
98
THR
95
C
PRO
96
n
99
PRO
96
C
CYS
97
n
100
CYS
97
C
THR
98
n
101
THR
98
C
CYS
99
n
102
CYS
99
C
GLY
100
n
103
GLY
100
C
SER
101
n
104
SER
101
C
SER
102
n
105
SER
102
C
ASP
103
n
106
ASP
103
C
LEU
104
n
107
LEU
104
C
TYR
105
n
108
TYR
105
C
LEU
106
n
109
LEU
106
C
VAL
107
n
110
VAL
107
C
THR
108
n
111
THR
108
C
ARG
109
n
112
ARG
109
C
HIS
110
n
113
HIS
110
C
ALA
111
n
114
ALA
111
C
ASP
112
n
115
ASP
112
C
VAL
113
n
116
VAL
113
C
ILE
114
n
117
ILE
114
C
PRO
115
n
118
PRO
115
C
VAL
116
n
119
VAL
116
C
ARG
117
n
120
ARG
117
C
ARG
118
n
121
ARG
118
C
ARG
119
n
122
ARG
119
C
GLY
120
n
123
GLY
120
C
ASP
121
n
124
ASP
121
C
SER
122
n
125
SER
122
C
ARG
123
n
126
ARG
123
C
GLY
124
n
127
GLY
124
C
SER
125
n
128
SER
125
C
LEU
126
n
129
LEU
126
C
LEU
127
n
130
LEU
127
C
SER
128
n
131
SER
128
C
PRO
129
n
132
PRO
129
C
ARG
130
n
133
ARG
130
C
PRO
131
n
134
PRO
131
C
VAL
132
n
135
VAL
132
C
SER
133
n
136
SER
133
C
TYR
134
n
137
TYR
134
C
LEU
135
n
138
LEU
135
C
LYS
136
n
139
LYS
136
C
GLY
137
n
140
GLY
137
C
SER
138
n
141
SER
138
C
SER
139
n
142
SER
139
C
GLY
140
n
143
GLY
140
C
GLY
141
n
144
GLY
141
C
PRO
142
n
145
PRO
142
C
LEU
143
n
146
LEU
143
C
LEU
144
n
147
LEU
144
C
CYS
145
n
148
CYS
145
C
PRO
146
n
149
PRO
146
C
SER
147
n
150
SER
147
C
GLY
148
n
151
GLY
148
C
HIS
149
n
152
HIS
149
C
VAL
150
n
153
VAL
150
C
VAL
151
n
154
VAL
151
C
GLY
152
n
155
GLY
152
C
ILE
153
n
156
ILE
153
C
PHE
154
n
157
PHE
154
C
ARG
155
n
158
ARG
155
C
ALA
156
n
159
ALA
156
C
ALA
157
n
160
ALA
157
C
VAL
158
n
161
VAL
158
C
CYS
159
n
162
CYS
159
C
THR
160
n
163
THR
160
C
ARG
161
n
164
ARG
161
C
GLY
162
n
165
GLY
162
C
VAL
163
n
166
VAL
163
C
ALA
164
n
167
ALA
164
C
LYS
165
n
168
LYS
165
C
ALA
166
n
169
ALA
166
C
VAL
167
n
170
VAL
167
C
ASP
168
n
171
ASP
168
C
PHE
169
n
172
PHE
169
C
ILE
170
n
173
ILE
170
C
PRO
171
n
174
PRO
171
C
VAL
172
n
175
VAL
172
C
GLU
173
n
176
GLU
173
C
SER
174
n
177
SER
174
C
MET
175
n
178
MET
175
C
GLU
176
n
179
GLU
176
C
THR
177
n
180
THR
177
C
THR
178
n
181
THR
178
C
MET
179
n
182
MET
179
C
n
183
180
C
n
184
181
C
n
185
182
C
n
186
183
C
n
187
184
C
n
188
185
C
n
189
186
C
n
190
187
C
LYS
220
n
1
LYS
220
D
GLY
221
n
2
GLY
221
D
SER
222
n
3
SER
222
D
VAL
223
n
4
VAL
223
D
VAL
224
n
5
VAL
224
D
ILE
225
n
6
ILE
225
D
VAL
226
n
7
VAL
226
D
GLY
227
n
8
GLY
227
D
ARG
228
n
9
ARG
228
D
ILE
229
n
10
ILE
229
D
ILE
230
n
11
ILE
230
D
LEU
231
n
12
LEU
231
D
SER
232
n
13
SER
232
D
n
14
233
D
n
15
234
D
n
16
235
D
author_and_software_defined_assembly
PISA
2
dimeric
author_and_software_defined_assembly
PISA
2
dimeric
2470
-52
8400
2530
-52
8630
A
CYS
97
A
SG
CYS
100
1_555
A
ZN
201
E
ZN
ZN
1_555
A
CYS
99
A
SG
CYS
102
1_555
115.6
A
CYS
97
A
SG
CYS
100
1_555
A
ZN
201
E
ZN
ZN
1_555
A
CYS
145
A
SG
CYS
148
1_555
98.5
A
CYS
99
A
SG
CYS
102
1_555
A
ZN
201
E
ZN
ZN
1_555
A
CYS
145
A
SG
CYS
148
1_555
110.9
A
CYS
97
A
SG
CYS
100
1_555
A
ZN
201
E
ZN
ZN
1_555
A
HOH
310
I
O
HOH
1_555
106.8
A
CYS
99
A
SG
CYS
102
1_555
A
ZN
201
E
ZN
ZN
1_555
A
HOH
310
I
O
HOH
1_555
118.4
A
CYS
145
A
SG
CYS
148
1_555
A
ZN
201
E
ZN
ZN
1_555
A
HOH
310
I
O
HOH
1_555
104.2
C
CYS
97
C
SG
CYS
100
1_555
C
ZN
201
G
ZN
ZN
1_555
C
CYS
99
C
SG
CYS
102
1_555
115.4
C
CYS
97
C
SG
CYS
100
1_555
C
ZN
201
G
ZN
ZN
1_555
C
CYS
145
C
SG
CYS
148
1_555
108.1
C
CYS
99
C
SG
CYS
102
1_555
C
ZN
201
G
ZN
ZN
1_555
C
CYS
145
C
SG
CYS
148
1_555
92.4
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
TYR
6
A
N
TYR
9
B
O
ILE
230
B
O
ILE
11
B
O
VAL
224
B
O
VAL
5
A
N
SER
37
A
N
SER
40
A
N
LEU
36
A
N
LEU
39
A
O
PHE
43
A
O
PHE
46
A
N
THR
46
A
N
THR
49
A
O
TRP
53
A
O
TRP
56
A
N
CYS
52
A
N
CYS
55
A
O
TRP
85
A
O
TRP
88
A
O
LEU
82
A
O
LEU
85
A
N
ASN
77
A
N
ASN
80
A
N
LEU
64
A
N
LEU
67
A
O
ILE
71
A
O
ILE
74
A
N
LEU
104
A
N
LEU
107
A
O
VAL
116
A
O
VAL
119
A
N
ARG
117
A
N
ARG
120
A
O
SER
125
A
O
SER
128
A
N
GLY
124
A
N
GLY
127
A
O
VAL
167
A
O
VAL
170
A
O
ASP
168
A
O
ASP
171
A
N
ALA
156
A
N
ALA
159
A
O
VAL
151
A
O
VAL
154
A
N
LEU
143
A
N
LEU
146
A
O
LEU
144
A
O
LEU
147
A
N
TYR
105
A
N
TYR
108
C
N
TYR
6
C
N
TYR
9
D
O
ILE
230
D
O
ILE
11
D
O
GLY
227
D
O
GLY
8
C
N
VAL
35
C
N
VAL
38
C
N
LEU
36
C
N
LEU
39
C
O
PHE
43
C
O
PHE
46
C
N
THR
46
C
N
THR
49
C
O
TRP
53
C
O
TRP
56
C
N
CYS
52
C
N
CYS
55
C
O
TRP
85
C
O
TRP
88
C
O
LEU
82
C
O
LEU
85
C
N
ASN
77
C
N
ASN
80
C
N
LEU
104
C
N
LEU
107
C
O
VAL
116
C
O
VAL
119
C
N
ARG
117
C
N
ARG
120
C
O
SER
125
C
O
SER
128
C
N
GLY
124
C
N
GLY
127
C
O
VAL
167
C
O
VAL
170
C
O
ASP
168
C
O
ASP
171
C
N
ALA
156
C
N
ALA
159
C
O
GLY
152
C
O
GLY
155
C
N
LEU
143
C
N
LEU
146
C
O
LEU
144
C
O
LEU
147
C
N
TYR
105
C
N
TYR
108
1
A
GLY
-2
A
GLY
1
1
Y
1
A
SER
-1
A
SER
2
1
Y
1
A
MET
0
A
MET
3
1
Y
1
A
GLU
176
A
GLU
179
1
Y
1
A
THR
177
A
THR
180
1
Y
1
A
THR
178
A
THR
181
1
Y
1
A
MET
179
A
MET
182
1
Y
1
A
ARG
180
A
ARG
183
1
Y
1
A
SER
181
A
SER
184
1
Y
1
A
PRO
182
A
PRO
185
1
Y
1
A
VAL
183
A
VAL
186
1
Y
1
A
PHE
184
A
PHE
187
1
Y
1
A
THR
185
A
THR
188
1
Y
1
A
ASP
186
A
ASP
189
1
Y
1
A
ASN
187
A
ASN
190
1
Y
1
B
LYS
220
B
LYS
1
1
Y
1
B
ARG
234
B
ARG
15
1
Y
1
B
LYS
235
B
LYS
16
1
Y
1
C
GLY
-2
C
GLY
1
1
Y
1
C
SER
-1
C
SER
2
1
Y
1
C
MET
0
C
MET
3
1
Y
1
C
ARG
180
C
ARG
183
1
Y
1
C
SER
181
C
SER
184
1
Y
1
C
PRO
182
C
PRO
185
1
Y
1
C
VAL
183
C
VAL
186
1
Y
1
C
PHE
184
C
PHE
187
1
Y
1
C
THR
185
C
THR
188
1
Y
1
C
ASP
186
C
ASP
189
1
Y
1
C
ASN
187
C
ASN
190
1
Y
1
D
GLY
233
D
GLY
14
1
Y
1
D
ARG
234
D
ARG
15
1
Y
1
D
LYS
235
D
LYS
16
1
Y
1
A
LYS
68
-109.03
56.65
1
C
PRO
2
-68.49
-135.72
1
C
PHE
43
-169.25
-167.71
1
C
SER
101
-49.44
150.14
47.359
1.08
1.08
-0.00
1.08
-0.00
-3.51
0.948
0.919
0.25838
0.20640
0.20896
2.30
28.46
827
16112
4.9
99.00
7.766
0.191
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.395
0.258
0.80
0.80
1.20
PDB ENTRY 1DY8
MAXIMUM LIKELIHOOD
BABINET MODEL WITH MASK
2.30
28.46
39
2923
106
0
2778
0.007
0.019
2950
1.298
2.021
4030
6.215
5.000
376
28.109
21.868
91
17.731
15.000
447
17.883
15.000
24
0.077
0.200
459
0.006
0.021
2122
0.322
0.255
2.359
59
1164
20
97.92
2.3
28.46
4KTC
17102
16946
0
2.0
0.157
0.142
1
9.13
99.1
0.397
2.3
2.42
2.20
2474
0.361
1
5.74
98.1
data collection
CrystalClear
phasing
MLPHARE
refinement
REFMAC
5.7.0029
data reduction
CrystalClear
data scaling
SCALA
NS3/NS4A protease with inhibitor
1
N
N
2
N
N
1
N
N
2
N
N
3
N
N
4
N
N
3
N
N
4
N
N
5
N
N
5
N
N
5
N
N
A
GLY
12
A
GLY
15
HELX_P
A
GLY
23
A
GLY
26
1
1
12
A
TYR
56
A
TYR
59
HELX_P
A
GLY
60
A
GLY
63
1
2
5
A
VAL
78
A
VAL
81
HELX_P
A
GLN
80
A
GLN
83
5
3
3
A
VAL
132
A
VAL
135
HELX_P
A
LYS
136
A
LYS
139
1
4
5
A
GLU
173
A
GLU
176
HELX_P
A
MET
175
A
MET
178
5
5
3
C
GLY
12
C
GLY
15
HELX_P
C
GLY
23
C
GLY
26
1
6
12
C
TYR
56
C
TYR
59
HELX_P
C
GLY
60
C
GLY
63
1
7
5
C
VAL
78
C
VAL
81
HELX_P
C
GLN
80
C
GLN
83
5
8
3
C
VAL
132
C
VAL
135
HELX_P
C
LYS
136
C
LYS
139
1
9
5
C
VAL
172
C
VAL
175
HELX_P
C
MET
179
C
MET
182
1
10
8
metalc
2.329
A
CYS
97
A
SG
CYS
100
1_555
A
ZN
201
E
ZN
ZN
1_555
metalc
2.185
A
CYS
99
A
SG
CYS
102
1_555
A
ZN
201
E
ZN
ZN
1_555
metalc
2.375
A
CYS
145
A
SG
CYS
148
1_555
A
ZN
201
E
ZN
ZN
1_555
metalc
2.341
A
ZN
201
E
ZN
ZN
1_555
A
HOH
310
I
O
HOH
1_555
metalc
2.411
C
CYS
97
C
SG
CYS
100
1_555
C
ZN
201
G
ZN
ZN
1_555
metalc
2.904
C
CYS
99
C
SG
CYS
102
1_555
C
ZN
201
G
ZN
ZN
1_555
metalc
2.124
C
CYS
145
C
SG
CYS
148
1_555
C
ZN
201
G
ZN
ZN
1_555
HYDROLASE/HYDROLASE INHIBITOR
Protease, HYDROLASE-HYDROLASE INHIBITOR complex
POLG_HCVJA
UNP
1
1028
P26662
PITAYSQQTRGLLGCIITSLTGRDKNQVDGEVQVLSTATQSFLATCVNGVCWTVYHGAGSKTLAGPKGPITQMYTNVDQD
LVGWPAPPGARSMTPCTCGSSDLYLVTRHADVVPVRRRGDSRGSLLSPRPISYLKGSSGGPLLCPSGHVVGIFRAAVCTR
GVAKAVDFIPVESMETTMRSPVFTDN
4KTC
PDB
2
4KTC
1028
1213
4KTC
2
187
P26662
A
1
5
190
1028
1213
4KTC
2
187
P26662
C
1
5
190
220
235
4KTC
220
235
4KTC
B
2
1
16
220
235
4KTC
220
235
4KTC
D
2
1
16
1
expression tag
GLY
-2
4KTC
A
P26662
UNP
1
1
expression tag
SER
-1
4KTC
A
P26662
UNP
2
1
expression tag
MET
0
4KTC
A
P26662
UNP
3
1
expression tag
ALA
1
4KTC
A
P26662
UNP
4
1
VAL
variant
ILE
114
4KTC
A
P26662
UNP
1140
117
1
ILE
variant
VAL
132
4KTC
A
P26662
UNP
1158
135
2
expression tag
GLY
-2
4KTC
C
P26662
UNP
1
2
expression tag
SER
-1
4KTC
C
P26662
UNP
2
2
expression tag
MET
0
4KTC
C
P26662
UNP
3
2
expression tag
ALA
1
4KTC
C
P26662
UNP
4
2
VAL
variant
ILE
114
4KTC
C
P26662
UNP
1140
117
2
ILE
variant
VAL
132
4KTC
C
P26662
UNP
1158
135
7
2
7
7
7
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
THR
4
A
THR
7
A
GLN
9
A
GLN
12
B
VAL
224
B
VAL
5
B
SER
232
B
SER
13
A
VAL
33
A
VAL
36
A
THR
38
A
THR
41
A
GLN
41
A
GLN
44
A
VAL
48
A
VAL
51
A
VAL
51
A
VAL
54
A
VAL
55
A
VAL
58
A
LEU
82
A
LEU
85
A
PRO
86
A
PRO
89
A
TYR
75
A
TYR
78
A
ASN
77
A
ASN
80
A
LEU
64
A
LEU
67
A
GLY
66
A
GLY
69
A
GLY
69
A
GLY
72
A
ILE
71
A
ILE
74
A
ASP
103
A
ASP
106
A
VAL
107
A
VAL
110
A
VAL
113
A
VAL
116
A
ARG
118
A
ARG
121
A
ARG
123
A
ARG
126
A
PRO
131
A
PRO
134
A
VAL
163
A
VAL
166
A
PRO
171
A
PRO
174
A
VAL
150
A
VAL
153
A
THR
160
A
THR
163
A
PRO
142
A
PRO
145
A
LEU
144
A
LEU
147
A
ASP
103
A
ASP
106
A
VAL
107
A
VAL
110
C
ALA
5
C
ALA
8
C
GLN
9
C
GLN
12
D
VAL
224
D
VAL
5
D
LEU
231
D
LEU
12
C
VAL
33
C
VAL
36
C
SER
37
C
SER
40
C
SER
42
C
SER
45
C
VAL
48
C
VAL
51
C
VAL
51
C
VAL
54
C
VAL
55
C
VAL
58
C
LEU
82
C
LEU
85
C
PRO
86
C
PRO
89
C
TYR
75
C
TYR
78
C
ASN
77
C
ASN
80
C
ASP
103
C
ASP
106
C
VAL
107
C
VAL
110
C
VAL
113
C
VAL
116
C
ARG
118
C
ARG
121
C
ARG
123
C
ARG
126
C
PRO
131
C
PRO
134
C
VAL
163
C
VAL
166
C
PRO
171
C
PRO
174
C
VAL
150
C
VAL
153
C
THR
160
C
THR
163
C
PRO
142
C
PRO
145
C
LEU
144
C
LEU
147
C
ASP
103
C
ASP
106
C
VAL
107
C
VAL
110
BINDING SITE FOR RESIDUE ZN A 201
A
ZN
201
Software
6
BINDING SITE FOR RESIDUE 1X3 A 202
A
1X3
202
Software
22
BINDING SITE FOR RESIDUE ZN C 201
C
ZN
201
Software
3
BINDING SITE FOR RESIDUE 1X3 C 202
C
1X3
202
Software
16
A
CYS
97
A
CYS
100
6
1_555
A
THR
98
A
THR
101
6
1_555
A
CYS
99
A
CYS
102
6
1_555
A
CYS
145
A
CYS
148
6
1_555
A
SER
147
A
SER
150
6
1_555
A
HOH
310
I
HOH
6
1_555
A
GLN
41
A
GLN
44
22
1_555
A
PHE
43
A
PHE
46
22
1_555
A
HIS
57
A
HIS
60
22
1_555
A
GLY
58
A
GLY
61
22
1_555
A
ASP
79
A
ASP
82
22
1_555
A
ASP
81
A
ASP
84
22
1_555
A
VAL
132
A
VAL
135
22
1_555
A
LEU
135
A
LEU
138
22
1_555
A
LYS
136
A
LYS
139
22
1_555
A
GLY
137
A
GLY
140
22
1_555
A
SER
138
A
SER
141
22
1_555
A
SER
139
A
SER
142
22
1_555
A
PHE
154
A
PHE
157
22
1_555
A
ARG
155
A
ARG
158
22
1_555
A
ALA
156
A
ALA
159
22
1_555
A
ALA
157
A
ALA
160
22
1_555
A
ASP
168
A
ASP
171
22
1_555
C
ASN
49
C
ASN
52
22
1_555
C
VAL
51
C
VAL
54
22
1_555
C
MET
74
C
MET
77
22
1_555
C
TYR
75
C
TYR
78
22
1_555
C
MET
179
C
MET
182
22
1_555
C
CYS
97
C
CYS
100
3
1_555
C
CYS
99
C
CYS
102
3
1_555
C
CYS
145
C
CYS
148
3
1_555
C
PHE
43
C
PHE
46
16
1_555
C
HIS
57
C
HIS
60
16
1_555
C
GLY
58
C
GLY
61
16
1_555
C
ASP
79
C
ASP
82
16
1_555
C
ASP
81
C
ASP
84
16
1_555
C
ARG
119
C
ARG
122
16
2_755
C
VAL
132
C
VAL
135
16
1_555
C
LEU
135
C
LEU
138
16
1_555
C
LYS
136
C
LYS
139
16
1_555
C
GLY
137
C
GLY
140
16
1_555
C
SER
138
C
SER
141
16
1_555
C
SER
139
C
SER
142
16
1_555
C
PHE
154
C
PHE
157
16
1_555
C
ARG
155
C
ARG
158
16
1_555
C
ALA
156
C
ALA
159
16
1_555
C
ALA
157
C
ALA
160
16
1_555
173
P 63