0.009381
0.005416
0.000000
0.000000
0.010832
0.000000
0.000000
0.000000
0.004695
0.00000
0.00000
0.00000
Krey, T.
Bontems, F.
Vonrhein, C.
Vaney, M.-C.
Bricogne, G.
Ruemenapf, T.
Rey, F.A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
24
90.00
90.00
120.00
106.597
106.597
213.007
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C6 H12 O6
180.156
beta-D-mannopyranose
beta-D-mannose; D-mannose; mannose
D-saccharide, beta linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C6 H12 O5
164.156
alpha-D-fucopyranose
alpha-D-fucose; 6-deoxy-alpha-D-galactopyranose; D-fucose; fucose
D-saccharide, alpha linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C6 H12 O6
180.156
alpha-D-mannopyranose
alpha-D-mannose; D-mannose; mannose
D-saccharide, alpha linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C8 H15 N O6
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE
D-saccharide, beta linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
R
C
N
75
S
C
N
76
S
C
N
77
S
C
N
78
R
C
N
79
N
C
N
80
N
O
N
81
N
O
N
82
N
O
N
83
N
O
N
84
N
O
N
85
N
O
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
N
N
99
R
C
N
100
N
C
N
101
N
O
N
102
N
C
N
103
N
S
N
104
N
O
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
S
C
N
113
R
C
N
114
S
C
N
115
R
C
N
116
R
C
N
117
N
C
N
118
N
O
N
119
N
O
N
120
N
O
N
121
N
O
N
122
N
O
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
N
N
136
S
C
N
137
N
C
N
138
N
O
N
139
N
C
N
140
N
C
N
141
N
C
N
142
N
O
N
143
N
N
N
144
N
O
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
N
N
156
S
C
N
157
N
C
N
158
N
O
N
159
N
C
N
160
N
C
N
161
N
C
N
162
N
O
N
163
N
O
N
164
N
O
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
N
N
175
N
C
N
176
N
C
N
177
N
O
N
178
N
O
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
N
N
185
S
C
N
186
N
C
N
187
N
O
N
188
N
C
Y
189
N
C
Y
190
N
N
Y
191
N
C
Y
192
N
C
Y
193
N
N
N
194
N
O
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
O
N
206
N
H
N
207
N
H
N
208
N
N
N
209
S
C
N
210
N
C
N
211
N
O
N
212
S
C
N
213
N
C
N
214
N
C
N
215
N
C
N
216
N
O
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
C
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
N
N
253
S
C
N
254
N
C
N
255
N
O
N
256
N
C
N
257
N
C
N
258
N
C
N
259
N
C
N
260
N
N
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
S
C
N
278
S
C
N
279
S
C
N
280
S
C
N
281
R
C
N
282
N
C
N
283
N
O
N
284
N
O
N
285
N
O
N
286
N
O
N
287
N
O
N
288
N
O
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
N
N
302
S
C
N
303
N
C
N
304
N
O
N
305
N
C
N
306
N
C
N
307
N
S
N
308
N
C
N
309
N
O
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
R
C
N
322
R
C
N
323
R
C
N
324
S
C
N
325
R
C
N
326
N
C
N
327
N
C
N
328
N
C
N
329
N
N
N
330
N
O
N
331
N
O
N
332
N
O
N
333
N
O
N
334
N
O
N
335
N
O
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
N
N
352
S
C
N
353
N
C
N
354
N
O
N
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
Y
359
N
C
Y
360
N
C
Y
361
N
C
N
362
N
O
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
N
N
375
S
C
N
376
N
C
N
377
N
O
N
378
N
C
N
379
N
C
N
380
N
C
N
381
N
O
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
N
N
392
S
C
N
393
N
C
N
394
N
O
N
395
N
C
N
396
N
O
N
397
N
O
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
S
N
406
N
O
N
407
N
O
N
408
N
O
N
409
N
O
N
410
N
N
N
411
S
C
N
412
N
C
N
413
N
O
N
414
R
C
N
415
N
O
N
416
N
C
N
417
N
O
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
N
N
428
S
C
N
429
N
C
N
430
N
O
N
431
N
C
Y
432
N
C
Y
433
N
C
Y
434
N
C
Y
435
N
N
Y
436
N
C
Y
437
N
C
Y
438
N
C
Y
439
N
C
Y
440
N
C
N
441
N
O
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
N
N
455
S
C
N
456
N
C
N
457
N
O
N
458
N
C
Y
459
N
C
Y
460
N
C
Y
461
N
C
Y
462
N
C
Y
463
N
C
Y
464
N
C
N
465
N
O
N
466
N
O
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
N
N
479
S
C
N
480
N
C
N
481
N
O
N
482
N
C
N
483
N
C
N
484
N
C
N
485
N
O
N
486
N
H
N
487
N
H
N
488
N
H
N
489
N
H
N
490
N
H
N
491
N
H
N
492
N
H
N
493
N
H
N
494
N
H
N
495
N
H
N
496
N
H
N
497
N
ZN
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
doub
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
doub
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
doub
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
doub
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
doub
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
doub
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
doub
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
Y
187
N
sing
Y
188
N
doub
Y
189
N
doub
N
190
N
sing
Y
191
N
sing
N
192
N
sing
Y
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
doub
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
doub
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
doub
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
doub
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
doub
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
doub
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
Y
349
N
doub
Y
350
N
sing
Y
351
N
sing
N
352
N
sing
Y
353
N
doub
N
354
N
sing
Y
355
N
doub
N
356
N
sing
Y
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
doub
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
doub
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
doub
N
392
N
doub
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
doub
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
doub
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
Y
422
N
doub
Y
423
N
sing
Y
424
N
sing
N
425
N
sing
Y
426
N
doub
Y
427
N
sing
Y
428
N
sing
N
429
N
sing
Y
430
N
sing
Y
431
N
doub
N
432
N
sing
Y
433
N
doub
N
434
N
sing
Y
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
doub
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
Y
450
N
doub
Y
451
N
sing
Y
452
N
sing
N
453
N
sing
Y
454
N
doub
N
455
N
sing
Y
456
N
doub
N
457
N
sing
Y
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
doub
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
UK
Structure
STRUE6
2005
0969-2126
20
862
873
10.1016/j.str.2012.03.018
22579253
Crystal Structure of the Pestivirus Envelope Glycoprotein E(rns) and Mechanistic Analysis of Its Ribonuclease Activity.
2012
10.2210/pdb4dwc/pdb
pdb_00004dwc
110
1
CCD
2009-06-20
ADSC QUANTUM 315r
Si(111) monochromator
SINGLE WAVELENGTH
M
x-ray
1
1.28170
1.0
ID23-1
ESRF
1.28170
SYNCHROTRON
ESRF BEAMLINE ID23-1
19005.492
E(rns) glycoprotein
N-terminal fragment
2
man
polymer
1235.105
alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-3)-[beta-D-mannopyranose-(1-4)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
2
man
branched
424.401
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
4
man
branched
570.542
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-D-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose
1
man
branched
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
4
man
non-polymer
65.409
ZINC ION
2
syn
non-polymer
96.063
SULFATE ION
7
syn
non-polymer
18.015
water
44
nat
water
no
no
RSENITQWNLQDNGTEGIQRAMFQRGVNRSLHGIWPEKICTGVPSHLATDTELKAIHGMMDASEKTNYTCCRLQRHEWNK
HGWCNWYNIEPWILLMNKTQANLTEGQPLRECAVTCRYDRDSDLNVVTQARDSPTPLTGCKKGKNFSFAGILVQGPCNFE
IAVSDVL
RSENITQWNLQDNGTEGIQRAMFQRGVNRSLHGIWPEKICTGVPSHLATDTELKAIHGMMDASEKTNYTCCRLQRHEWNK
HGWCNWYNIEPWILLMNKTQANLTEGQPLRECAVTCRYDRDSDLNVVTQARDSPTPLTGCKKGKNFSFAGILVQGPCNFE
IAVSDVL
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
BVDV
CP7
sample
Erns
268305
Bovine viral diarrhea virus
7227
Drosophila melanogaster
plasmid
pMT-BIP-based
1
4.60
73.23
VAPOR DIFFUSION
4.6
33% PEG2000 MME, 100mM Na-Acetate, 140mM (NH4)2SO4, 50mM KH2PO4, 50mM ZnCl2, pH 4.6, VAPOR DIFFUSION, temperature 298K
298
atom_site
chem_comp
entity
pdbx_branch_scheme
pdbx_chem_comp_identifier
pdbx_entity_branch
pdbx_entity_branch_descriptor
pdbx_entity_branch_link
pdbx_entity_branch_list
pdbx_entity_nonpoly
pdbx_nonpoly_scheme
pdbx_struct_assembly_gen
pdbx_struct_conn_angle
pdbx_unobs_or_zero_occ_atoms
struct_asym
struct_conn
struct_ref_seq_dif
struct_site
struct_site_gen
chem_comp
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_unobs_or_zero_occ_atoms
repository
Initial release
Carbohydrate remediation
repository
Remediation
Advisory
Atomic model
Data collection
Database references
Derived calculations
Structure summary
Advisory
Data collection
Database references
Refinement description
Structure summary
1
0
2012-05-23
2
0
2020-07-29
2
1
2023-09-13
_atom_site.B_iso_or_equiv
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.label_asym_id
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_entity_id
_atom_site.occupancy
_atom_site.pdbx_formal_charge
_atom_site.type_symbol
_chem_comp.name
_chem_comp.type
_entity.formula_weight
_entity.pdbx_description
_entity.pdbx_number_of_molecules
_entity.src_method
_entity.type
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_alt_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_alt_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_role
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_ref_seq_dif.details
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
A
NAG
1101
n
C
NAG
1
A
NAG
1102
n
C
NAG
2
A
BMA
1103
n
C
BMA
3
A
BMA
1105
n
C
BMA
4
A
MAN
1106
n
C
MAN
5
A
MAN
1104
n
C
MAN
6
A
BMA
1107
n
C
BMA
7
A
NAG
1108
n
D
NAG
1
A
NAG
1109
n
D
NAG
2
A
NAG
1111
n
E
NAG
1
A
NAG
1112
n
E
NAG
2
B
NAG
1101
n
F
NAG
1
B
NAG
1102
n
F
NAG
2
B
BMA
1103
n
F
BMA
3
B
BMA
1105
n
F
BMA
4
B
MAN
1106
n
F
MAN
5
B
MAN
1104
n
F
MAN
6
B
BMA
1107
n
F
BMA
7
B
NAG
1109
n
G
NAG
1
B
NAG
1110
n
G
NAG
2
B
FCA
1111
n
G
FCA
3
B
NAG
1112
n
H
NAG
1
B
NAG
1113
n
H
NAG
2
B
NAG
1114
n
I
NAG
1
B
NAG
1115
n
I
NAG
2
DManpb
b-D-mannopyranose
b-D-Manp
Man
DFucpa
a-D-fucopyranose
a-D-Fucp
Fuc
DManpa
a-D-mannopyranose
a-D-Manp
Man
DGlcpNAcb
N-acetyl-b-D-glucopyranosamine
b-D-GlcpNAc
GlcNAc
RCSB
Y
RCSB
2012-02-24
REL
REL
oligosaccharide
oligosaccharide
oligosaccharide
DManpa1-6DManpb1-3[DManpb1-4DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-
2
GMML
1.0
Glycam Condensed Sequence
WURCS=2.0/3,7,6/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5]/1-1-2-2-3-3-2/a4-b1_b4-c1_c3-d1_c6-f1_d6-e1_f4-g1
2
PDB2Glycan
1.1.0
WURCS
[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{[(3+1)][b-D-Manp]{[(6+1)][a-D-Manp]{}}[(6+1)][a-D-Manp]{[(4+1)][b-D-Manp]{}}}}}}
2
PDB-CARE
LINUCS
DGlcpNAcb1-4DGlcpNAcb1-
3
GMML
1.0
Glycam Condensed Sequence
WURCS=2.0/1,2,1/[a2122h-1b_1-5_2*NCC/3=O]/1-1/a4-b1
3
PDB2Glycan
1.1.0
WURCS
[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{}}}
3
PDB-CARE
LINUCS
DGlcpNAcb1-4[DFucpa1-6]DGlcpNAcb1-
4
GMML
1.0
Glycam Condensed Sequence
WURCS=2.0/2,3,2/[a2122h-1b_1-5_2*NCC/3=O][a2112m-1a_1-5]/1-1-2/a4-b1_a6-c1
4
PDB2Glycan
1.1.0
WURCS
[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{}[(6+1)][a-D-Fucp]{}}}
4
PDB-CARE
LINUCS
C1
O4
NAG
NAG
2
1
2
O1
HO4
sing
C1
O4
BMA
NAG
3
2
2
O1
HO4
sing
C1
O3
BMA
BMA
4
3
2
O1
HO3
sing
C1
O6
MAN
BMA
5
4
2
O1
HO6
sing
C1
O6
MAN
BMA
6
3
2
O1
HO6
sing
C1
O4
BMA
MAN
7
6
2
O1
HO4
sing
C1
O4
NAG
NAG
2
1
3
O1
HO4
sing
C1
O4
NAG
NAG
2
1
4
O1
HO4
sing
C1
O6
FCA
NAG
3
1
4
O1
HO6
sing
n
n
n
n
n
n
n
n
n
n
n
n
NAG
2-acetamido-2-deoxy-beta-D-glucopyranose
ZN
ZINC ION
SO4
SULFATE ION
HOH
water
4DVK
PDB entry 4DVK
PDB
experimental model
NAG
1113
5
NAG
NAG
1112
A
NAG
1114
5
NAG
NAG
1113
A
ZN
1115
6
ZN
ZN
1114
A
ZN
1116
6
ZN
ZN
1115
A
SO4
1117
7
SO4
SO4
1116
A
SO4
1118
7
SO4
SO4
1117
A
SO4
1119
7
SO4
SO4
1118
A
NAG
1108
5
NAG
NAG
1108
B
NAG
1117
5
NAG
NAG
1116
B
SO4
1119
7
SO4
SO4
1117
B
SO4
1120
7
SO4
SO4
1118
B
SO4
1121
7
SO4
SO4
1119
B
SO4
1123
7
SO4
SO4
1120
B
HOH
1201
8
HOH
HOH
1201
A
HOH
1202
8
HOH
HOH
1202
A
HOH
1203
8
HOH
HOH
1203
A
HOH
1205
8
HOH
HOH
1204
A
HOH
1206
8
HOH
HOH
1205
A
HOH
1207
8
HOH
HOH
1206
A
HOH
1208
8
HOH
HOH
1207
A
HOH
1209
8
HOH
HOH
1208
A
HOH
1210
8
HOH
HOH
1209
A
HOH
1211
8
HOH
HOH
1210
A
HOH
1212
8
HOH
HOH
1211
A
HOH
1213
8
HOH
HOH
1212
A
HOH
1214
8
HOH
HOH
1213
A
HOH
1215
8
HOH
HOH
1214
A
HOH
1216
8
HOH
HOH
1215
A
HOH
1217
8
HOH
HOH
1216
A
HOH
1218
8
HOH
HOH
1217
A
HOH
1219
8
HOH
HOH
1218
A
HOH
1220
8
HOH
HOH
1219
A
HOH
1221
8
HOH
HOH
1220
A
HOH
1222
8
HOH
HOH
1221
A
HOH
1223
8
HOH
HOH
1222
A
HOH
1224
8
HOH
HOH
1223
A
HOH
1225
8
HOH
HOH
1224
A
HOH
1226
8
HOH
HOH
1225
A
HOH
1227
8
HOH
HOH
1226
A
HOH
1201
8
HOH
HOH
1201
B
HOH
1202
8
HOH
HOH
1202
B
HOH
1203
8
HOH
HOH
1203
B
HOH
1204
8
HOH
HOH
1204
B
HOH
1205
8
HOH
HOH
1205
B
HOH
1206
8
HOH
HOH
1206
B
HOH
1207
8
HOH
HOH
1207
B
HOH
1208
8
HOH
HOH
1208
B
HOH
1209
8
HOH
HOH
1209
B
HOH
1210
8
HOH
HOH
1210
B
HOH
1211
8
HOH
HOH
1211
B
HOH
1212
8
HOH
HOH
1212
B
HOH
1213
8
HOH
HOH
1213
B
HOH
1214
8
HOH
HOH
1214
B
HOH
1215
8
HOH
HOH
1215
B
HOH
1216
8
HOH
HOH
1216
B
HOH
1217
8
HOH
HOH
1217
B
HOH
1218
8
HOH
HOH
1218
B
n
1
1
A
n
2
2
A
GLU
3
n
3
GLU
3
A
ASN
4
n
4
ASN
4
A
ILE
5
n
5
ILE
5
A
THR
6
n
6
THR
6
A
GLN
7
n
7
GLN
7
A
TRP
8
n
8
TRP
8
A
ASN
9
n
9
ASN
9
A
LEU
10
n
10
LEU
10
A
GLN
11
n
11
GLN
11
A
ASP
12
n
12
ASP
12
A
ASN
13
n
13
ASN
13
A
GLY
14
n
14
GLY
14
A
THR
15
n
15
THR
15
A
GLU
16
n
16
GLU
16
A
GLY
17
n
17
GLY
17
A
ILE
18
n
18
ILE
18
A
GLN
19
n
19
GLN
19
A
ARG
20
n
20
ARG
20
A
ALA
21
n
21
ALA
21
A
MET
22
n
22
MET
22
A
PHE
23
n
23
PHE
23
A
GLN
24
n
24
GLN
24
A
ARG
25
n
25
ARG
25
A
GLY
26
n
26
GLY
26
A
VAL
27
n
27
VAL
27
A
ASN
28
n
28
ASN
28
A
ARG
29
n
29
ARG
29
A
SER
30
n
30
SER
30
A
LEU
31
n
31
LEU
31
A
HIS
32
n
32
HIS
32
A
GLY
33
n
33
GLY
33
A
ILE
34
n
34
ILE
34
A
TRP
35
n
35
TRP
35
A
PRO
36
n
36
PRO
36
A
GLU
37
n
37
GLU
37
A
LYS
38
n
38
LYS
38
A
ILE
39
n
39
ILE
39
A
CYS
40
n
40
CYS
40
A
THR
41
n
41
THR
41
A
GLY
42
n
42
GLY
42
A
VAL
43
n
43
VAL
43
A
PRO
44
n
44
PRO
44
A
SER
45
n
45
SER
45
A
HIS
46
n
46
HIS
46
A
LEU
47
n
47
LEU
47
A
ALA
48
n
48
ALA
48
A
THR
49
n
49
THR
49
A
ASP
50
n
50
ASP
50
A
THR
51
n
51
THR
51
A
GLU
52
n
52
GLU
52
A
LEU
53
n
53
LEU
53
A
LYS
54
n
54
LYS
54
A
ALA
55
n
55
ALA
55
A
ILE
56
n
56
ILE
56
A
HIS
57
n
57
HIS
57
A
GLY
58
n
58
GLY
58
A
MET
59
n
59
MET
59
A
MET
60
n
60
MET
60
A
ASP
61
n
61
ASP
61
A
ALA
62
n
62
ALA
62
A
SER
63
n
63
SER
63
A
GLU
64
n
64
GLU
64
A
LYS
65
n
65
LYS
65
A
THR
66
n
66
THR
66
A
ASN
67
n
67
ASN
67
A
TYR
68
n
68
TYR
68
A
THR
69
n
69
THR
69
A
CYS
70
n
70
CYS
70
A
CYS
71
n
71
CYS
71
A
ARG
72
n
72
ARG
72
A
LEU
73
n
73
LEU
73
A
GLN
74
n
74
GLN
74
A
ARG
75
n
75
ARG
75
A
HIS
76
n
76
HIS
76
A
GLU
77
n
77
GLU
77
A
TRP
78
n
78
TRP
78
A
ASN
79
n
79
ASN
79
A
LYS
80
n
80
LYS
80
A
HIS
81
n
81
HIS
81
A
GLY
82
n
82
GLY
82
A
TRP
83
n
83
TRP
83
A
CYS
84
n
84
CYS
84
A
ASN
85
n
85
ASN
85
A
TRP
86
n
86
TRP
86
A
TYR
87
n
87
TYR
87
A
ASN
88
n
88
ASN
88
A
ILE
89
n
89
ILE
89
A
GLU
90
n
90
GLU
90
A
PRO
91
n
91
PRO
91
A
TRP
92
n
92
TRP
92
A
ILE
93
n
93
ILE
93
A
LEU
94
n
94
LEU
94
A
LEU
95
n
95
LEU
95
A
MET
96
n
96
MET
96
A
ASN
97
n
97
ASN
97
A
LYS
98
n
98
LYS
98
A
THR
99
n
99
THR
99
A
GLN
100
n
100
GLN
100
A
ALA
101
n
101
ALA
101
A
ASN
102
n
102
ASN
102
A
LEU
103
n
103
LEU
103
A
THR
104
n
104
THR
104
A
GLU
105
n
105
GLU
105
A
GLY
106
n
106
GLY
106
A
GLN
107
n
107
GLN
107
A
PRO
108
n
108
PRO
108
A
LEU
109
n
109
LEU
109
A
ARG
110
n
110
ARG
110
A
GLU
111
n
111
GLU
111
A
CYS
112
n
112
CYS
112
A
ALA
113
n
113
ALA
113
A
VAL
114
n
114
VAL
114
A
THR
115
n
115
THR
115
A
CYS
116
n
116
CYS
116
A
ARG
117
n
117
ARG
117
A
TYR
118
n
118
TYR
118
A
ASP
119
n
119
ASP
119
A
ARG
120
n
120
ARG
120
A
ASP
121
n
121
ASP
121
A
SER
122
n
122
SER
122
A
ASP
123
n
123
ASP
123
A
LEU
124
n
124
LEU
124
A
ASN
125
n
125
ASN
125
A
VAL
126
n
126
VAL
126
A
VAL
127
n
127
VAL
127
A
THR
128
n
128
THR
128
A
GLN
129
n
129
GLN
129
A
ALA
130
n
130
ALA
130
A
ARG
131
n
131
ARG
131
A
ASP
132
n
132
ASP
132
A
SER
133
n
133
SER
133
A
PRO
134
n
134
PRO
134
A
THR
135
n
135
THR
135
A
PRO
136
n
136
PRO
136
A
LEU
137
n
137
LEU
137
A
THR
138
n
138
THR
138
A
GLY
139
n
139
GLY
139
A
CYS
140
n
140
CYS
140
A
LYS
141
n
141
LYS
141
A
LYS
142
n
142
LYS
142
A
GLY
143
n
143
GLY
143
A
LYS
144
n
144
LYS
144
A
ASN
145
n
145
ASN
145
A
PHE
146
n
146
PHE
146
A
SER
147
n
147
SER
147
A
PHE
148
n
148
PHE
148
A
ALA
149
n
149
ALA
149
A
GLY
150
n
150
GLY
150
A
ILE
151
n
151
ILE
151
A
LEU
152
n
152
LEU
152
A
VAL
153
n
153
VAL
153
A
GLN
154
n
154
GLN
154
A
GLY
155
n
155
GLY
155
A
PRO
156
n
156
PRO
156
A
CYS
157
n
157
CYS
157
A
ASN
158
n
158
ASN
158
A
PHE
159
n
159
PHE
159
A
GLU
160
n
160
GLU
160
A
n
161
161
A
n
162
162
A
n
163
163
A
n
164
164
A
n
165
165
A
n
166
166
A
n
167
167
A
n
1
1
B
n
2
2
B
GLU
3
n
3
GLU
3
B
ASN
4
n
4
ASN
4
B
ILE
5
n
5
ILE
5
B
THR
6
n
6
THR
6
B
GLN
7
n
7
GLN
7
B
TRP
8
n
8
TRP
8
B
ASN
9
n
9
ASN
9
B
LEU
10
n
10
LEU
10
B
GLN
11
n
11
GLN
11
B
ASP
12
n
12
ASP
12
B
ASN
13
n
13
ASN
13
B
GLY
14
n
14
GLY
14
B
THR
15
n
15
THR
15
B
GLU
16
n
16
GLU
16
B
GLY
17
n
17
GLY
17
B
ILE
18
n
18
ILE
18
B
GLN
19
n
19
GLN
19
B
ARG
20
n
20
ARG
20
B
ALA
21
n
21
ALA
21
B
MET
22
n
22
MET
22
B
PHE
23
n
23
PHE
23
B
GLN
24
n
24
GLN
24
B
ARG
25
n
25
ARG
25
B
GLY
26
n
26
GLY
26
B
VAL
27
n
27
VAL
27
B
ASN
28
n
28
ASN
28
B
ARG
29
n
29
ARG
29
B
SER
30
n
30
SER
30
B
LEU
31
n
31
LEU
31
B
HIS
32
n
32
HIS
32
B
GLY
33
n
33
GLY
33
B
ILE
34
n
34
ILE
34
B
TRP
35
n
35
TRP
35
B
PRO
36
n
36
PRO
36
B
GLU
37
n
37
GLU
37
B
LYS
38
n
38
LYS
38
B
ILE
39
n
39
ILE
39
B
CYS
40
n
40
CYS
40
B
THR
41
n
41
THR
41
B
GLY
42
n
42
GLY
42
B
VAL
43
n
43
VAL
43
B
PRO
44
n
44
PRO
44
B
SER
45
n
45
SER
45
B
HIS
46
n
46
HIS
46
B
LEU
47
n
47
LEU
47
B
ALA
48
n
48
ALA
48
B
THR
49
n
49
THR
49
B
ASP
50
n
50
ASP
50
B
THR
51
n
51
THR
51
B
GLU
52
n
52
GLU
52
B
LEU
53
n
53
LEU
53
B
LYS
54
n
54
LYS
54
B
ALA
55
n
55
ALA
55
B
ILE
56
n
56
ILE
56
B
HIS
57
n
57
HIS
57
B
GLY
58
n
58
GLY
58
B
MET
59
n
59
MET
59
B
MET
60
n
60
MET
60
B
ASP
61
n
61
ASP
61
B
ALA
62
n
62
ALA
62
B
SER
63
n
63
SER
63
B
GLU
64
n
64
GLU
64
B
LYS
65
n
65
LYS
65
B
THR
66
n
66
THR
66
B
ASN
67
n
67
ASN
67
B
TYR
68
n
68
TYR
68
B
THR
69
n
69
THR
69
B
CYS
70
n
70
CYS
70
B
CYS
71
n
71
CYS
71
B
ARG
72
n
72
ARG
72
B
LEU
73
n
73
LEU
73
B
GLN
74
n
74
GLN
74
B
ARG
75
n
75
ARG
75
B
HIS
76
n
76
HIS
76
B
GLU
77
n
77
GLU
77
B
TRP
78
n
78
TRP
78
B
ASN
79
n
79
ASN
79
B
LYS
80
n
80
LYS
80
B
HIS
81
n
81
HIS
81
B
GLY
82
n
82
GLY
82
B
TRP
83
n
83
TRP
83
B
CYS
84
n
84
CYS
84
B
ASN
85
n
85
ASN
85
B
TRP
86
n
86
TRP
86
B
TYR
87
n
87
TYR
87
B
ASN
88
n
88
ASN
88
B
ILE
89
n
89
ILE
89
B
GLU
90
n
90
GLU
90
B
PRO
91
n
91
PRO
91
B
TRP
92
n
92
TRP
92
B
ILE
93
n
93
ILE
93
B
LEU
94
n
94
LEU
94
B
LEU
95
n
95
LEU
95
B
MET
96
n
96
MET
96
B
ASN
97
n
97
ASN
97
B
LYS
98
n
98
LYS
98
B
THR
99
n
99
THR
99
B
GLN
100
n
100
GLN
100
B
ALA
101
n
101
ALA
101
B
ASN
102
n
102
ASN
102
B
LEU
103
n
103
LEU
103
B
THR
104
n
104
THR
104
B
GLU
105
n
105
GLU
105
B
GLY
106
n
106
GLY
106
B
GLN
107
n
107
GLN
107
B
PRO
108
n
108
PRO
108
B
LEU
109
n
109
LEU
109
B
ARG
110
n
110
ARG
110
B
GLU
111
n
111
GLU
111
B
CYS
112
n
112
CYS
112
B
ALA
113
n
113
ALA
113
B
VAL
114
n
114
VAL
114
B
THR
115
n
115
THR
115
B
CYS
116
n
116
CYS
116
B
ARG
117
n
117
ARG
117
B
TYR
118
n
118
TYR
118
B
ASP
119
n
119
ASP
119
B
ARG
120
n
120
ARG
120
B
ASP
121
n
121
ASP
121
B
SER
122
n
122
SER
122
B
ASP
123
n
123
ASP
123
B
LEU
124
n
124
LEU
124
B
ASN
125
n
125
ASN
125
B
VAL
126
n
126
VAL
126
B
VAL
127
n
127
VAL
127
B
THR
128
n
128
THR
128
B
GLN
129
n
129
GLN
129
B
ALA
130
n
130
ALA
130
B
ARG
131
n
131
ARG
131
B
ASP
132
n
132
ASP
132
B
SER
133
n
133
SER
133
B
PRO
134
n
134
PRO
134
B
THR
135
n
135
THR
135
B
PRO
136
n
136
PRO
136
B
LEU
137
n
137
LEU
137
B
THR
138
n
138
THR
138
B
GLY
139
n
139
GLY
139
B
CYS
140
n
140
CYS
140
B
LYS
141
n
141
LYS
141
B
LYS
142
n
142
LYS
142
B
GLY
143
n
143
GLY
143
B
LYS
144
n
144
LYS
144
B
ASN
145
n
145
ASN
145
B
PHE
146
n
146
PHE
146
B
SER
147
n
147
SER
147
B
PHE
148
n
148
PHE
148
B
ALA
149
n
149
ALA
149
B
GLY
150
n
150
GLY
150
B
ILE
151
n
151
ILE
151
B
LEU
152
n
152
LEU
152
B
VAL
153
n
153
VAL
153
B
GLN
154
n
154
GLN
154
B
GLY
155
n
155
GLY
155
B
PRO
156
n
156
PRO
156
B
CYS
157
n
157
CYS
157
B
ASN
158
n
158
ASN
158
B
PHE
159
n
159
PHE
159
B
GLU
160
n
160
GLU
160
B
n
161
161
B
n
162
162
B
n
163
163
B
n
164
164
B
n
165
165
B
n
166
166
B
n
167
167
B
author_defined_assembly
1
monomeric
author_defined_assembly
1
monomeric
A
LYS
80
B
A
NZ
LYS
80
1_555
A
ZN
1114
L
ZN
ZN
1_555
A
HIS
81
A
NE2
HIS
81
1_555
119.7
A
LYS
80
B
A
NZ
LYS
80
1_555
A
ZN
1114
L
ZN
ZN
1_555
A
SO4
1118
P
O4
SO4
1_555
145.0
A
HIS
81
A
NE2
HIS
81
1_555
A
ZN
1114
L
ZN
ZN
1_555
A
SO4
1118
P
O4
SO4
1_555
95.1
A
LYS
80
B
A
NZ
LYS
80
1_555
A
ZN
1114
L
ZN
ZN
1_555
A
SO4
1118
P
S
SO4
1_555
106.3
A
HIS
81
A
NE2
HIS
81
1_555
A
ZN
1114
L
ZN
ZN
1_555
A
SO4
1118
P
S
SO4
1_555
126.3
A
SO4
1118
P
O4
SO4
1_555
A
ZN
1114
L
ZN
ZN
1_555
A
SO4
1118
P
S
SO4
1_555
41.9
A
LYS
80
B
A
NZ
LYS
80
1_555
A
ZN
1114
L
ZN
ZN
1_555
A
SO4
1118
P
O2
SO4
1_555
73.3
A
HIS
81
A
NE2
HIS
81
1_555
A
ZN
1114
L
ZN
ZN
1_555
A
SO4
1118
P
O2
SO4
1_555
166.7
A
SO4
1118
P
O4
SO4
1_555
A
ZN
1114
L
ZN
ZN
1_555
A
SO4
1118
P
O2
SO4
1_555
71.8
A
SO4
1118
P
S
SO4
1_555
A
ZN
1114
L
ZN
ZN
1_555
A
SO4
1118
P
O2
SO4
1_555
41.5
A
LYS
80
B
A
NZ
LYS
80
1_555
A
ZN
1114
L
ZN
ZN
1_555
A
SO4
1118
P
O3
SO4
1_555
94.7
A
HIS
81
A
NE2
HIS
81
1_555
A
ZN
1114
L
ZN
ZN
1_555
A
SO4
1118
P
O3
SO4
1_555
106.7
A
SO4
1118
P
O4
SO4
1_555
A
ZN
1114
L
ZN
ZN
1_555
A
SO4
1118
P
O3
SO4
1_555
69.2
A
SO4
1118
P
S
SO4
1_555
A
ZN
1114
L
ZN
ZN
1_555
A
SO4
1118
P
O3
SO4
1_555
39.8
A
SO4
1118
P
O2
SO4
1_555
A
ZN
1114
L
ZN
ZN
1_555
A
SO4
1118
P
O3
SO4
1_555
67.2
B
ASN
102
GLYCOSYLATION SITE
B
ASN
102
ASN
B
ASN
28
GLYCOSYLATION SITE
B
ASN
28
ASN
B
ASN
13
GLYCOSYLATION SITE
B
ASN
13
ASN
A
ASN
102
GLYCOSYLATION SITE
A
ASN
102
ASN
A
ASN
28
GLYCOSYLATION SITE
A
ASN
28
ASN
A
ASN
97
GLYCOSYLATION SITE
A
ASN
97
ASN
B
ASN
67
GLYCOSYLATION SITE
B
ASN
67
ASN
B
ASN
4
GLYCOSYLATION SITE
B
ASN
4
ASN
A
ASN
4
GLYCOSYLATION SITE
A
ASN
4
ASN
B
ASN
97
GLYCOSYLATION SITE
B
ASN
97
ASN
A
ASN
13
GLYCOSYLATION SITE
A
ASN
13
ASN
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
TRP
35
A
O
TRP
35
A
N
ILE
5
A
N
ILE
5
A
N
TRP
8
A
N
TRP
8
A
O
ALA
130
A
O
ALA
130
A
N
ASN
125
A
N
ASN
125
A
O
ASN
145
A
O
ASN
145
A
N
PHE
148
A
N
PHE
148
A
O
ILE
151
A
O
ILE
151
A
O
TRP
35
A
O
TRP
35
A
N
ILE
5
A
N
ILE
5
A
N
TRP
8
A
N
TRP
8
A
O
ALA
130
A
O
ALA
130
A
O
LEU
124
A
O
LEU
124
A
N
ASP
119
A
N
ASP
119
A
N
GLU
111
A
N
GLU
111
A
O
ASN
158
A
O
ASN
158
B
O
TRP
35
B
O
TRP
35
B
N
ILE
5
B
N
ILE
5
B
N
TRP
8
B
N
TRP
8
B
O
ALA
130
B
O
ALA
130
B
N
ASN
125
B
N
ASN
125
B
O
ASN
145
B
O
ASN
145
B
N
PHE
148
B
N
PHE
148
B
O
ILE
151
B
O
ILE
151
B
O
TRP
35
B
O
TRP
35
B
N
ILE
5
B
N
ILE
5
B
N
TRP
8
B
N
TRP
8
B
O
ALA
130
B
O
ALA
130
B
O
LEU
124
B
O
LEU
124
B
N
ASP
119
B
N
ASP
119
B
N
GLU
111
B
N
GLU
111
B
O
ASN
158
B
O
ASN
158
1
A
SG
CYS
140
B
A
SG
CYS
140
0
Y
1
B
O
CYS
112
A
B
O
CYS
112
0
Y
1
A
ARG
1
A
ARG
1
1
Y
1
A
SER
2
A
SER
2
1
Y
1
A
ILE
161
A
ILE
161
1
Y
1
A
ALA
162
A
ALA
162
1
Y
1
A
VAL
163
A
VAL
163
1
Y
1
A
SER
164
A
SER
164
1
Y
1
A
ASP
165
A
ASP
165
1
Y
1
A
VAL
166
A
VAL
166
1
Y
1
A
LEU
167
A
LEU
167
1
Y
1
B
ARG
1
B
ARG
1
1
Y
1
B
SER
2
B
SER
2
1
Y
1
B
ILE
161
B
ILE
161
1
Y
1
B
ALA
162
B
ALA
162
1
Y
1
B
VAL
163
B
VAL
163
1
Y
1
B
SER
164
B
SER
164
1
Y
1
B
ASP
165
B
ASP
165
1
Y
1
B
VAL
166
B
VAL
166
1
Y
1
B
LEU
167
B
LEU
167
1
Y
1
A
ASP
12
-165.54
112.01
1
A
THR
69
-115.18
-91.23
1
A
TYR
87
66.91
-27.30
1
B
ASP
12
-165.49
111.20
1
B
THR
69
-115.51
-92.02
1
B
TYR
87
65.98
-27.94
1
B
GLN
107
-108.00
56.63
1
B
ARG
110
109.93
140.89
52.74
-9.0684
0.0000
0.0000
-9.0684
0.0000
18.1368
0.8958
0.8848
0.2273
0.1950
0.1971
2.89
47.66
1026
16703
16452
6.24
98.30
1.000
0.000
RANDOM
1
THROUGHOUT
0.0
MOLECULAR REPLACEMENT
PDB entry 4DVK
Engh & Huber
0.343
2.89
47.66
44
2977
409
0
2524
0.010
3066
HARMONIC
2.00
1.25
4229
HARMONIC
2.00
1178
SINUSOIDAL
2.00
78
HARMONIC
2.00
429
HARMONIC
5.00
2704
HARMONIC
20.00
0
SEMIHARMONIC
5.00
3.060
19.360
485
SEMIHARMONIC
5.000
6
HARMONIC
1.000
7
HARMONIC
1.000
10
HARMONIC
1.000
3296
SEMIHARMONIC
4.000
0.2982
0.2276
0.2322
3.09
180
2474
2654
8
6.78
98.30
68.84
2.89
47.6600
4DWC
16758
16506
0.0
-3.0
1
98.5
2.89
3.05
1
90.3
data scaling
Phil R. Evans
pre@mrc-lmb.cam.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/scala.html
SCALA
other
phasing
Randy J. Read
cimr-phaser@lists.cam.ac.uk
http://www-structmed.cimr.cam.ac.uk/phaser/
PHASER
program
refinement
Gerard Bricogne
buster-develop@GlobalPhasing.com
http://www.globalphasing.com/buster/
BUSTER-TNT
program
BUSTER 2.9.2
data extraction
PDB
deposit@deposit.rcsb.org
June 10, 2010
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.10
data scaling
XDS
data reduction
XDS
refinement
BUSTER
2.9.2
Crystal structure of the glycoprotein Erns from the pestivirus BVDV-1 in complex with Zn ions
1
N
N
1
N
N
2
N
N
3
N
N
3
N
N
2
N
N
4
N
N
3
N
N
3
N
N
5
N
N
5
N
N
6
N
N
6
N
N
7
N
N
7
N
N
7
N
N
5
N
N
5
N
N
7
N
N
7
N
N
7
N
N
7
N
N
8
N
N
8
N
N
A
GLY
17
A
GLY
17
HELX_P
A
ARG
25
A
ARG
25
1
1
9
A
THR
49
A
THR
49
HELX_P
A
LYS
54
A
LYS
54
1
2
6
A
SER
63
A
SER
63
HELX_P
A
ASN
67
A
ASN
67
5
3
5
A
CYS
71
A
CYS
71
HELX_P
A
GLY
82
A
GLY
82
1
4
12
A
GLY
82
A
GLY
82
HELX_P
A
TYR
87
A
TYR
87
1
5
6
A
ASN
88
A
ASN
88
HELX_P
A
GLU
105
A
GLU
105
1
6
18
B
GLY
17
B
GLY
17
HELX_P
B
ARG
25
B
ARG
25
1
7
9
B
THR
49
B
THR
49
HELX_P
B
LYS
54
B
LYS
54
1
8
6
B
SER
63
B
SER
63
HELX_P
B
ASN
67
B
ASN
67
5
9
5
B
CYS
71
B
CYS
71
HELX_P
B
GLY
82
B
GLY
82
1
10
12
B
GLY
82
B
GLY
82
HELX_P
B
TYR
87
B
TYR
87
1
11
6
B
ASN
88
B
ASN
88
HELX_P
B
GLU
105
B
GLU
105
1
12
18
disulf
2.045
A
CYS
40
A
SG
CYS
40
1_555
A
CYS
84
A
SG
CYS
84
1_555
disulf
2.027
A
A
A
CYS
70
A
SG
CYS
70
1_555
A
CYS
71
A
SG
CYS
71
1_555
disulf
2.512
B
B
A
CYS
70
A
SG
CYS
70
1_555
A
CYS
71
A
SG
CYS
71
1_555
disulf
2.029
A
A
A
CYS
112
A
SG
CYS
112
1_555
A
CYS
157
A
SG
CYS
157
1_555
disulf
2.973
B
B
A
CYS
112
A
SG
CYS
112
1_555
A
CYS
157
A
SG
CYS
157
1_555
disulf
2.030
A
A
A
CYS
116
A
SG
CYS
116
1_555
A
CYS
140
A
SG
CYS
140
1_555
disulf
2.972
B
B
A
CYS
116
A
SG
CYS
116
1_555
A
CYS
140
A
SG
CYS
140
1_555
disulf
2.051
B
CYS
40
B
SG
CYS
40
1_555
B
CYS
84
B
SG
CYS
84
1_555
disulf
2.074
B
CYS
70
B
SG
CYS
70
1_555
B
CYS
71
B
SG
CYS
71
1_555
disulf
2.029
A
A
B
CYS
112
B
SG
CYS
112
1_555
B
CYS
157
B
SG
CYS
157
1_555
disulf
2.971
B
B
B
CYS
112
B
SG
CYS
112
1_555
B
CYS
157
B
SG
CYS
157
1_555
disulf
2.031
A
A
B
CYS
116
B
SG
CYS
116
1_555
B
CYS
140
B
SG
CYS
140
1_555
disulf
2.974
B
B
B
CYS
116
B
SG
CYS
116
1_555
B
CYS
140
B
SG
CYS
140
1_555
covale
1.438
one
N-Glycosylation
A
ASN
4
A
ND2
ASN
4
1_555
C
NAG
1
C
C1
NAG
1_555
covale
1.440
one
N-Glycosylation
A
ASN
13
A
ND2
ASN
13
1_555
A
NAG
1113
K
C1
NAG
1_555
covale
1.432
one
N-Glycosylation
A
ASN
28
A
ND2
ASN
28
1_555
D
NAG
1
D
C1
NAG
1_555
covale
1.433
one
N-Glycosylation
A
ASN
97
A
ND2
ASN
97
1_555
E
NAG
1
E
C1
NAG
1_555
covale
1.432
one
N-Glycosylation
A
ASN
102
A
ND2
ASN
102
1_555
A
NAG
1112
J
C1
NAG
1_555
covale
1.438
one
N-Glycosylation
B
ASN
4
B
ND2
ASN
4
1_555
F
NAG
1
F
C1
NAG
1_555
covale
1.430
one
N-Glycosylation
B
ASN
13
B
ND2
ASN
13
1_555
B
NAG
1116
R
C1
NAG
1_555
covale
1.430
one
N-Glycosylation
B
ASN
28
B
ND2
ASN
28
1_555
B
NAG
1108
Q
C1
NAG
1_555
covale
1.434
one
N-Glycosylation
B
ASN
67
B
ND2
ASN
67
1_555
G
NAG
1
G
C1
NAG
1_555
covale
1.440
one
N-Glycosylation
B
ASN
97
B
ND2
ASN
97
1_555
H
NAG
1
H
C1
NAG
1_555
covale
1.429
one
N-Glycosylation
B
ASN
102
B
ND2
ASN
102
1_555
I
NAG
1
I
C1
NAG
1_555
covale
1.414
both
C
NAG
1
C
O4
NAG
1_555
C
NAG
2
C
C1
NAG
1_555
covale
1.408
both
C
NAG
2
C
O4
NAG
1_555
C
BMA
3
C
C1
BMA
1_555
covale
1.436
both
C
BMA
3
C
O3
BMA
1_555
C
BMA
4
C
C1
BMA
1_555
covale
1.396
both
C
BMA
3
C
O6
BMA
1_555
C
MAN
6
C
C1
MAN
1_555
covale
1.400
both
C
BMA
4
C
O6
BMA
1_555
C
MAN
5
C
C1
MAN
1_555
covale
1.444
both
C
MAN
6
C
O4
MAN
1_555
C
BMA
7
C
C1
BMA
1_555
covale
1.457
both
D
NAG
1
D
O4
NAG
1_555
D
NAG
2
D
C1
NAG
1_555
covale
1.437
both
E
NAG
1
E
O4
NAG
1_555
E
NAG
2
E
C1
NAG
1_555
covale
1.410
both
F
NAG
1
F
O4
NAG
1_555
F
NAG
2
F
C1
NAG
1_555
covale
1.409
both
F
NAG
2
F
O4
NAG
1_555
F
BMA
3
F
C1
BMA
1_555
covale
1.428
both
F
BMA
3
F
O3
BMA
1_555
F
BMA
4
F
C1
BMA
1_555
covale
1.396
both
F
BMA
3
F
O6
BMA
1_555
F
MAN
6
F
C1
MAN
1_555
covale
1.407
both
F
BMA
4
F
O6
BMA
1_555
F
MAN
5
F
C1
MAN
1_555
covale
1.447
both
F
MAN
6
F
O4
MAN
1_555
F
BMA
7
F
C1
BMA
1_555
covale
1.426
both
G
NAG
1
G
O4
NAG
1_555
G
NAG
2
G
C1
NAG
1_555
covale
1.404
both
G
NAG
1
G
O6
NAG
1_555
G
FCA
3
G
C1
FCA
1_555
covale
1.427
both
H
NAG
1
H
O4
NAG
1_555
H
NAG
2
H
C1
NAG
1_555
covale
1.434
both
I
NAG
1
I
O4
NAG
1_555
I
NAG
2
I
C1
NAG
1_555
metalc
2.049
A
GLU
37
A
OE2
GLU
37
1_555
A
ZN
1115
M
ZN
ZN
1_555
metalc
2.613
B
A
LYS
80
A
NZ
LYS
80
1_555
A
ZN
1114
L
ZN
ZN
1_555
metalc
2.037
A
HIS
81
A
NE2
HIS
81
1_555
A
ZN
1114
L
ZN
ZN
1_555
metalc
1.966
A
ZN
1114
L
ZN
ZN
1_555
A
SO4
1118
P
O4
SO4
1_555
metalc
2.068
A
ZN
1114
L
ZN
ZN
1_555
A
SO4
1118
P
S
SO4
1_555
metalc
2.076
A
ZN
1114
L
ZN
ZN
1_555
A
SO4
1118
P
O2
SO4
1_555
metalc
2.228
A
ZN
1114
L
ZN
ZN
1_555
A
SO4
1118
P
O3
SO4
1_555
VIRAL PROTEIN
virus glycoprotein, T2 Ribonuclease, VIRAL PROTEIN
A
CYS
70
A
CYS
70
1
A
CYS
71
A
CYS
71
7.15
A
CYS
70
A
CYS
70
1
A
CYS
71
A
CYS
71
4.73
B
CYS
70
B
CYS
70
1
B
CYS
71
B
CYS
71
10.16
POLG_BVDVC
UNP
1
271
Q96662
ENITQWNLQDNGTEGIQRAMFQRGVNRSLHGIWPEKICTGVPSHLATDTELKAIHGMMDASEKTNYTCCRLQRHEWNKHG
WCNWYNIEPWILLMNKTQANLTEGQPLRECAVTCRYDRDSDLNVVTQARDSPTPLTGCKKGKNFSFAGILVQGPCNFEIA
VSDVL
271
435
4DWC
3
167
Q96662
A
1
3
167
271
435
4DWC
3
167
Q96662
B
1
3
167
1
expression tag
ARG
1
4DWC
A
Q96662
UNP
1
1
expression tag
SER
2
4DWC
A
Q96662
UNP
2
2
expression tag
ARG
1
4DWC
B
Q96662
UNP
1
2
expression tag
SER
2
4DWC
B
Q96662
UNP
2
5
5
5
5
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ARG
29
A
ARG
29
A
TRP
35
A
TRP
35
A
ILE
5
A
ILE
5
A
LEU
10
A
LEU
10
A
LEU
124
A
LEU
124
A
ARG
131
A
ARG
131
A
ASN
145
A
ASN
145
A
PHE
148
A
PHE
148
A
ILE
151
A
ILE
151
A
VAL
153
A
VAL
153
A
ARG
29
A
ARG
29
A
TRP
35
A
TRP
35
A
ILE
5
A
ILE
5
A
LEU
10
A
LEU
10
A
LEU
124
A
LEU
124
A
ARG
131
A
ARG
131
A
GLU
111
A
GLU
111
A
ASP
119
A
ASP
119
A
CYS
157
A
CYS
157
A
ASN
158
A
ASN
158
B
ARG
29
B
ARG
29
B
TRP
35
B
TRP
35
B
ILE
5
B
ILE
5
B
LEU
10
B
LEU
10
B
LEU
124
B
LEU
124
B
ARG
131
B
ARG
131
B
ASN
145
B
ASN
145
B
PHE
148
B
PHE
148
B
ILE
151
B
ILE
151
B
VAL
153
B
VAL
153
B
ARG
29
B
ARG
29
B
TRP
35
B
TRP
35
B
ILE
5
B
ILE
5
B
LEU
10
B
LEU
10
B
LEU
124
B
LEU
124
B
ARG
131
B
ARG
131
B
GLU
111
B
GLU
111
B
ASP
119
B
ASP
119
B
CYS
157
B
CYS
157
B
ASN
158
B
ASN
158
179
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