0.021390
0.000000
0.000000
0.000000
0.016689
0.000000
0.000000
0.000000
0.009172
0.00000
0.00000
0.00000
Weyand, M.
Lakshminarasimhan, M.
Gertz, M.
Steegborn, C.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
46.750
59.920
109.030
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C8 H16 N2 O3
188.224
n
N(6)-ACETYLLYSINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C2 H6 O2
62.068
1,2-ETHANEDIOL
ETHYLENE GLYCOL
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C21 H27 N7 O14 P2
663.425
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
non-polymer
C17 H25 N5 O15 P2
601.352
2'-O-ACETYL ADENOSINE-5-DIPHOSPHORIBOSE
RNA linking
C13 H13 Cl N2 O
248.708
(1S)-6-chloro-2,3,4,9-tetrahydro-1H-carbazole-1- carboxamide
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
O
N
15
N
C
N
16
N
C
N
17
N
N
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
C
N
22
S
C
N
23
N
N
N
24
N
C
N
25
N
O
N
26
N
O
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
N
N
44
S
C
N
45
N
C
N
46
N
O
N
47
N
C
N
48
N
C
N
49
N
C
N
50
N
N
N
51
N
C
N
52
N
N
N
53
N
N
N
54
N
O
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
N
N
71
S
C
N
72
N
C
N
73
N
O
N
74
N
C
N
75
N
C
N
76
N
O
N
77
N
N
N
78
N
O
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
N
N
88
S
C
N
89
N
C
N
90
N
O
N
91
N
C
N
92
N
C
N
93
N
O
N
94
N
O
N
95
N
O
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
N
N
104
R
C
N
105
N
C
N
106
N
O
N
107
N
C
N
108
N
S
N
109
N
O
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
C
N
118
N
O
N
119
N
C
N
120
N
O
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
S
C
N
129
N
C
N
130
N
O
N
131
N
C
N
132
N
C
N
133
N
C
N
134
N
O
N
135
N
N
N
136
N
O
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
N
N
148
S
C
N
149
N
C
N
150
N
O
N
151
N
C
N
152
N
C
N
153
N
C
N
154
N
O
N
155
N
O
N
156
N
O
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
N
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
O
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
N
N
177
S
C
N
178
N
C
N
179
N
O
N
180
N
C
Y
181
N
C
Y
182
N
N
Y
183
N
C
Y
184
N
C
Y
185
N
N
N
186
N
O
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
O
N
198
N
H
N
199
N
H
N
200
N
N
N
201
S
C
N
202
N
C
N
203
N
O
N
204
S
C
N
205
N
C
N
206
N
C
N
207
N
C
N
208
N
O
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
N
N
223
S
C
N
224
N
C
N
225
N
O
N
226
N
C
N
227
N
C
N
228
N
C
N
229
N
C
N
230
N
O
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
N
N
245
S
C
N
246
N
C
N
247
N
O
N
248
N
C
N
249
N
C
N
250
N
C
N
251
N
C
N
252
N
N
N
253
N
O
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
N
N
270
S
C
N
271
N
C
N
272
N
O
N
273
N
C
N
274
N
C
N
275
N
S
N
276
N
C
N
277
N
O
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
S
P
N
290
N
O
N
291
N
O
N
292
N
O
N
293
N
C
N
294
R
C
N
295
N
O
N
296
S
C
N
297
N
O
N
298
R
C
N
299
N
O
N
300
R
C
Y
301
N
N
Y
302
N
C
Y
303
N
N
Y
304
N
C
Y
305
N
C
N
306
N
N
Y
307
N
N
Y
308
N
C
Y
309
N
N
Y
310
N
C
N
311
N
O
N
312
N
P
N
313
N
O
N
314
N
O
N
315
N
O
N
316
N
C
N
317
R
C
N
318
N
O
N
319
S
C
N
320
N
O
N
321
R
C
N
322
N
O
N
323
R
C
Y
324
N
N
Y
325
N
C
Y
326
N
C
N
327
N
C
N
328
N
O
N
329
N
N
Y
330
N
C
Y
331
N
C
Y
332
N
C
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
S
P
N
361
N
O
N
362
N
O
N
363
N
O
N
364
N
C
N
365
R
C
N
366
N
O
N
367
S
C
N
368
N
O
N
369
R
C
N
370
N
O
N
371
R
C
Y
372
N
N
Y
373
N
C
Y
374
N
N
Y
375
N
C
Y
376
N
C
N
377
N
N
Y
378
N
N
Y
379
N
C
Y
380
N
N
Y
381
N
C
N
382
N
O
N
383
R
P
N
384
N
O
N
385
N
O
N
386
N
O
N
387
N
O
N
388
N
C
N
389
R
C
N
390
N
O
N
391
R
C
N
392
N
O
N
393
R
C
N
394
S
C
N
395
N
O
N
396
N
C
N
397
N
O
N
398
N
C
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
N
N
425
N
O
N
426
N
C
Y
427
N
N
N
428
N
C
Y
429
N
C
Y
430
N
C
Y
431
N
C
N
432
N
CL
Y
433
N
C
Y
434
N
C
Y
435
N
C
Y
436
N
C
Y
437
N
C
N
438
N
C
N
439
S
C
N
440
N
C
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
N
N
455
S
C
N
456
N
C
N
457
N
O
N
458
N
C
Y
459
N
C
Y
460
N
C
Y
461
N
C
Y
462
N
C
Y
463
N
C
Y
464
N
C
N
465
N
O
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
N
N
478
S
C
N
479
N
C
N
480
N
O
N
481
N
C
N
482
N
C
N
483
N
C
N
484
N
O
N
485
N
H
N
486
N
H
N
487
N
H
N
488
N
H
N
489
N
H
N
490
N
H
N
491
N
H
N
492
N
H
N
493
N
H
N
494
N
N
N
495
S
C
N
496
N
C
N
497
N
O
N
498
N
C
N
499
N
O
N
500
N
O
N
501
N
H
N
502
N
H
N
503
N
H
N
504
N
H
N
505
N
H
N
506
N
H
N
507
N
H
N
508
N
N
N
509
S
C
N
510
N
C
N
511
N
O
N
512
R
C
N
513
N
O
N
514
N
C
N
515
N
O
N
516
N
H
N
517
N
H
N
518
N
H
N
519
N
H
N
520
N
H
N
521
N
H
N
522
N
H
N
523
N
H
N
524
N
H
N
525
N
N
N
526
S
C
N
527
N
C
N
528
N
O
N
529
N
C
Y
530
N
C
Y
531
N
C
Y
532
N
C
Y
533
N
C
Y
534
N
C
Y
535
N
C
N
536
N
O
N
537
N
O
N
538
N
H
N
539
N
H
N
540
N
H
N
541
N
H
N
542
N
H
N
543
N
H
N
544
N
H
N
545
N
H
N
546
N
H
N
547
N
H
N
548
N
H
N
549
N
N
N
550
S
C
N
551
N
C
N
552
N
O
N
553
N
C
N
554
N
C
N
555
N
C
N
556
N
O
N
557
N
H
N
558
N
H
N
559
N
H
N
560
N
H
N
561
N
H
N
562
N
H
N
563
N
H
N
564
N
H
N
565
N
H
N
566
N
H
N
567
N
H
N
568
N
ZN
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
doub
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
doub
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
doub
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
doub
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
doub
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
doub
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
doub
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
doub
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
doub
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
doub
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
doub
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
Y
177
N
sing
Y
178
N
doub
Y
179
N
doub
N
180
N
sing
Y
181
N
sing
N
182
N
sing
Y
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
doub
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
doub
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
doub
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
doub
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
doub
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
Y
297
N
sing
Y
298
N
sing
Y
299
N
doub
N
300
N
sing
Y
301
N
sing
Y
302
N
sing
Y
303
N
doub
N
304
N
sing
Y
305
N
doub
N
306
N
sing
N
307
N
sing
Y
308
N
sing
Y
309
N
doub
N
310
N
sing
Y
311
N
sing
N
312
N
sing
N
313
N
doub
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
Y
334
N
sing
Y
335
N
doub
Y
336
N
doub
N
337
N
sing
N
338
N
sing
Y
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
Y
344
N
doub
N
345
N
sing
Y
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
doub
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
Y
372
N
sing
Y
373
N
sing
Y
374
N
doub
N
375
N
sing
Y
376
N
sing
Y
377
N
doub
Y
378
N
sing
N
379
N
sing
Y
380
N
sing
N
381
N
sing
N
382
N
sing
Y
383
N
doub
Y
384
N
sing
N
385
N
sing
Y
386
N
doub
N
387
N
sing
N
388
N
doub
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
doub
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
Y
420
N
sing
Y
421
N
doub
Y
422
N
sing
Y
423
N
doub
Y
424
N
doub
N
425
N
sing
Y
426
N
sing
Y
427
N
doub
Y
428
N
sing
Y
429
N
sing
Y
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
doub
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
doub
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
Y
459
N
doub
Y
460
N
sing
Y
461
N
sing
N
462
N
sing
Y
463
N
doub
N
464
N
sing
Y
465
N
doub
N
466
N
sing
Y
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
doub
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
N
494
N
doub
N
495
N
sing
N
496
N
sing
N
497
N
sing
N
498
N
sing
N
499
N
sing
N
500
N
sing
N
501
N
sing
N
502
N
sing
N
503
N
sing
N
504
N
sing
N
505
N
sing
N
506
N
sing
N
507
N
doub
N
508
N
sing
N
509
N
sing
N
510
N
sing
N
511
N
sing
N
512
N
sing
N
513
N
sing
N
514
N
sing
N
515
N
sing
N
516
N
sing
N
517
N
sing
N
518
N
sing
N
519
N
sing
N
520
N
sing
N
521
N
sing
N
522
N
sing
N
523
N
doub
N
524
N
sing
N
525
N
sing
N
526
N
sing
N
527
N
sing
Y
528
N
doub
Y
529
N
sing
Y
530
N
sing
N
531
N
sing
Y
532
N
doub
N
533
N
sing
Y
534
N
doub
N
535
N
sing
Y
536
N
sing
N
537
N
sing
N
538
N
sing
N
539
N
sing
N
540
N
sing
N
541
N
sing
N
542
N
sing
N
543
N
sing
N
544
N
sing
N
545
N
sing
N
546
N
sing
N
547
N
doub
N
548
N
sing
N
549
N
sing
N
550
N
sing
N
551
N
sing
N
552
N
sing
N
553
N
sing
N
554
N
sing
N
555
N
sing
N
556
N
sing
N
557
N
sing
N
558
N
sing
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
110
E2772
10.1073/PNAS.1303628110
23840057
Ex-527 Inhibits Sirtuins by Exploiting Their Unique Nad+-Dependent Deacetylation Mechanism
2013
10.2210/pdb4buz/pdb
pdb_00004buz
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
COLLIMATOR
CCD
2011-09-14
MARMOSAIC 225 mm CCD
SI(111) MONOCHROMATOR
SINGLE WAVELENGTH
M
x-ray
1
0.919980
1.0
14.1
BESSY
0.919980
SYNCHROTRON
BESSY BEAMLINE 14.1
27569.793
NAD-DEPENDENT PROTEIN DEACETYLASE
3.5.1.-
1
man
polymer
ACETYLATED P53 LYS-382
1133.452
CELLULAR TUMOR ANTIGEN P53
RESIDUES 379-386
1
syn
polymer
248.708
(1S)-6-chloro-2,3,4,9-tetrahydro-1H-carbazole-1- carboxamide
1
syn
non-polymer
663.425
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
1
syn
non-polymer
601.352
2'-O-ACETYL ADENOSINE-5-DIPHOSPHORIBOSE
1
syn
non-polymer
65.409
ZINC ION
1
syn
non-polymer
62.068
1,2-ETHANEDIOL
1
syn
non-polymer
18.015
water
200
nat
water
REGULATORY PROTEIN SIR2 HOMOLOG, SIR2TM, NAD-DEPENDENT PROTEIN DEACETYLASE SIR2
ANTIGEN NY-CO-13, PHOSPHOPROTEIN P53, TUMOR SUPPRESSOR P53, P53
no
no
MKMKEFLDLLNESRLTVTLTGAGISTPSGIPDFRGPNGIYKKYSQNVFDIDFFYSHPEEFYRFAKEGIFPMLQAKPNLAH
VLLAKLEEKGLIEAVITQNIDRLHQRAGSKKVIELHGNVEEYYCVRCEKKYTVEDVIKKLESSDVPLCDDCNSLIRPNIV
FFGENLPQDALREAIGLSSRASLMIVLGSSLVVYPAAELPLITVRSGGKLVIVNLGETPFDDIATLKYNMDVVEFARRVM
EEGGIS
MKMKEFLDLLNESRLTVTLTGAGISTPSGIPDFRGPNGIYKKYSQNVFDIDFFYSHPEEFYRFAKEGIFPMLQAKPNLAH
VLLAKLEEKGLIEAVITQNIDRLHQRAGSKKVIELHGNVEEYYCVRCEKKYTVEDVIKKLESSDVPLCDDCNSLIRPNIV
FFGENLPQDALREAIGLSSRASLMIVLGSSLVVYPAAELPLITVRSGGKLVIVNLGETPFDDIATLKYNMDVVEFARRVM
EEGGIS
A
polypeptide(L)
no
yes
RHK(ALY)LMFK
RHKKLMFK
P
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
2336
THERMOTOGA MARITIMA
469008
ESCHERICHIA COLI
BL21(DE3)
PLASMID
PET11A
1
2.66
53.76
NONE
8.5
8.5
chem_comp_atom
chem_comp_bond
database_2
pdbx_database_status
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_conn_type
struct_site
repository
Initial release
Database references
Data collection
Database references
Derived calculations
Other
Refinement description
1
0
2013-07-17
1
1
2013-08-07
1
2
2023-12-20
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_sf
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.conn_type_id
_struct_conn.id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn_type.id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
CRYSTAL STRUCTURE OF SIR2 IN COMPLEX WITH THE INHIBITOR EX-527, 2'-O-ACETYL-ADP-RIBOSE AND DEACETYLATED P53-PEPTIDE
CRYSTAL STRUCTURE OF SIRT3 IN COMPLEX WITH EX-527 AND NAD
CRYSTAL STRUCTURE OF HUMAN SIRT3 IN COMPLEX WITH THE INHIBITOR EX-527 AND ADP-RIBOSE
CRYSTAL STRUCTURE OF HUMAN SIRT3 IN COMPLEX WITH THIOALKYLIMIDATE FORMED FROM THIO-ACETYL-LYSINE ACS2- PEPTIDE
CRYSTAL STRUCTURE OF HUMAN SIRT3 IN COMPLEX WITH THIOALKYLIMIDATE FORMED FROM THIO-ACETYL-LYSINE ACS2- PEPTIDE CRYSTALLIZED IN PRESENCE OF THE INHIBITOR EX- 527
CRYSTAL STRUCTURE OF HUMAN SIRT3 IN COMPLEX WITH NATIVE ALKYLIMIDATE FORMED FROM ACETYL-LYSINE ACS2- PEPTIDE CRYSTALLIZED IN PRESENCE OF THE INHIBITOR EX- 527
CRYSTAL STRUCTURE OF HUMAN SIRT3 IN COMPLEX WITH THE INHIBITOR EX-527 AND 2'-O-ACETYL-ADP-RIBOSE
PDBE
Y
PDBE
2013-06-24
REL
REL
1
A
O
HOH
2076
5.85
OCZ
(1S)-6-chloro-2,3,4,9-tetrahydro-1H-carbazole-1- carboxamide
NAD
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
OAD
2'-O-ACETYL ADENOSINE-5-DIPHOSPHORIBOSE
ZN
ZINC ION
EDO
1,2-ETHANEDIOL
HOH
water
9606
HUMAN
HOMO SAPIENS
sample
THE INHIBITOR OCZ (A1247), ACETYLATED LYSINE ALY (P 382) AND
SUBSTRATE ACETYL RIBOSE OAD (A 1249) BIND ALTERNATIVELY TO
THE SAME BINDING SITE GIVING RISE TO MICROHETEROGENEITY.
2H4F
PDB ENTRY 2H4F
PDB
experimental model
OCZ
1247
3
OCZ
OCZ
1247
A
NAD
1248
4
NAD
NAD
1248
A
OAD
1249
5
OAD
OAD
1249
A
ZN
1250
6
ZN
ZN
1250
A
EDO
1251
7
EDO
EDO
1251
A
HOH
2001
8
HOH
HOH
2001
A
HOH
2002
8
HOH
HOH
2002
A
HOH
2003
8
HOH
HOH
2003
A
HOH
2004
8
HOH
HOH
2004
A
HOH
2005
8
HOH
HOH
2005
A
HOH
2006
8
HOH
HOH
2006
A
HOH
2007
8
HOH
HOH
2007
A
HOH
2008
8
HOH
HOH
2008
A
HOH
2009
8
HOH
HOH
2009
A
HOH
2010
8
HOH
HOH
2010
A
HOH
2011
8
HOH
HOH
2011
A
HOH
2012
8
HOH
HOH
2012
A
HOH
2013
8
HOH
HOH
2013
A
HOH
2014
8
HOH
HOH
2014
A
HOH
2015
8
HOH
HOH
2015
A
HOH
2016
8
HOH
HOH
2016
A
HOH
2017
8
HOH
HOH
2017
A
HOH
2018
8
HOH
HOH
2018
A
HOH
2019
8
HOH
HOH
2019
A
HOH
2020
8
HOH
HOH
2020
A
HOH
2021
8
HOH
HOH
2021
A
HOH
2022
8
HOH
HOH
2022
A
HOH
2023
8
HOH
HOH
2023
A
HOH
2024
8
HOH
HOH
2024
A
HOH
2025
8
HOH
HOH
2025
A
HOH
2026
8
HOH
HOH
2026
A
HOH
2027
8
HOH
HOH
2027
A
HOH
2028
8
HOH
HOH
2028
A
HOH
2029
8
HOH
HOH
2029
A
HOH
2030
8
HOH
HOH
2030
A
HOH
2031
8
HOH
HOH
2031
A
HOH
2032
8
HOH
HOH
2032
A
HOH
2033
8
HOH
HOH
2033
A
HOH
2034
8
HOH
HOH
2034
A
HOH
2035
8
HOH
HOH
2035
A
HOH
2036
8
HOH
HOH
2036
A
HOH
2037
8
HOH
HOH
2037
A
HOH
2038
8
HOH
HOH
2038
A
HOH
2039
8
HOH
HOH
2039
A
HOH
2040
8
HOH
HOH
2040
A
HOH
2041
8
HOH
HOH
2041
A
HOH
2042
8
HOH
HOH
2042
A
HOH
2043
8
HOH
HOH
2043
A
HOH
2044
8
HOH
HOH
2044
A
HOH
2045
8
HOH
HOH
2045
A
HOH
2046
8
HOH
HOH
2046
A
HOH
2047
8
HOH
HOH
2047
A
HOH
2048
8
HOH
HOH
2048
A
HOH
2049
8
HOH
HOH
2049
A
HOH
2050
8
HOH
HOH
2050
A
HOH
2051
8
HOH
HOH
2051
A
HOH
2052
8
HOH
HOH
2052
A
HOH
2053
8
HOH
HOH
2053
A
HOH
2054
8
HOH
HOH
2054
A
HOH
2055
8
HOH
HOH
2055
A
HOH
2056
8
HOH
HOH
2056
A
HOH
2057
8
HOH
HOH
2057
A
HOH
2058
8
HOH
HOH
2058
A
HOH
2059
8
HOH
HOH
2059
A
HOH
2060
8
HOH
HOH
2060
A
HOH
2061
8
HOH
HOH
2061
A
HOH
2062
8
HOH
HOH
2062
A
HOH
2063
8
HOH
HOH
2063
A
HOH
2064
8
HOH
HOH
2064
A
HOH
2065
8
HOH
HOH
2065
A
HOH
2066
8
HOH
HOH
2066
A
HOH
2067
8
HOH
HOH
2067
A
HOH
2068
8
HOH
HOH
2068
A
HOH
2069
8
HOH
HOH
2069
A
HOH
2070
8
HOH
HOH
2070
A
HOH
2071
8
HOH
HOH
2071
A
HOH
2072
8
HOH
HOH
2072
A
HOH
2073
8
HOH
HOH
2073
A
HOH
2074
8
HOH
HOH
2074
A
HOH
2075
8
HOH
HOH
2075
A
HOH
2076
8
HOH
HOH
2076
A
HOH
2077
8
HOH
HOH
2077
A
HOH
2078
8
HOH
HOH
2078
A
HOH
2079
8
HOH
HOH
2079
A
HOH
2080
8
HOH
HOH
2080
A
HOH
2081
8
HOH
HOH
2081
A
HOH
2082
8
HOH
HOH
2082
A
HOH
2083
8
HOH
HOH
2083
A
HOH
2084
8
HOH
HOH
2084
A
HOH
2085
8
HOH
HOH
2085
A
HOH
2086
8
HOH
HOH
2086
A
HOH
2087
8
HOH
HOH
2087
A
HOH
2088
8
HOH
HOH
2088
A
HOH
2089
8
HOH
HOH
2089
A
HOH
2090
8
HOH
HOH
2090
A
HOH
2091
8
HOH
HOH
2091
A
HOH
2092
8
HOH
HOH
2092
A
HOH
2093
8
HOH
HOH
2093
A
HOH
2094
8
HOH
HOH
2094
A
HOH
2095
8
HOH
HOH
2095
A
HOH
2096
8
HOH
HOH
2096
A
HOH
2097
8
HOH
HOH
2097
A
HOH
2098
8
HOH
HOH
2098
A
HOH
2099
8
HOH
HOH
2099
A
HOH
2100
8
HOH
HOH
2100
A
HOH
2101
8
HOH
HOH
2101
A
HOH
2102
8
HOH
HOH
2102
A
HOH
2103
8
HOH
HOH
2103
A
HOH
2104
8
HOH
HOH
2104
A
HOH
2105
8
HOH
HOH
2105
A
HOH
2106
8
HOH
HOH
2106
A
HOH
2107
8
HOH
HOH
2107
A
HOH
2108
8
HOH
HOH
2108
A
HOH
2109
8
HOH
HOH
2109
A
HOH
2110
8
HOH
HOH
2110
A
HOH
2111
8
HOH
HOH
2111
A
HOH
2112
8
HOH
HOH
2112
A
HOH
2113
8
HOH
HOH
2113
A
HOH
2114
8
HOH
HOH
2114
A
HOH
2115
8
HOH
HOH
2115
A
HOH
2116
8
HOH
HOH
2116
A
HOH
2117
8
HOH
HOH
2117
A
HOH
2118
8
HOH
HOH
2118
A
HOH
2119
8
HOH
HOH
2119
A
HOH
2120
8
HOH
HOH
2120
A
HOH
2121
8
HOH
HOH
2121
A
HOH
2122
8
HOH
HOH
2122
A
HOH
2123
8
HOH
HOH
2123
A
HOH
2124
8
HOH
HOH
2124
A
HOH
2125
8
HOH
HOH
2125
A
HOH
2126
8
HOH
HOH
2126
A
HOH
2127
8
HOH
HOH
2127
A
HOH
2128
8
HOH
HOH
2128
A
HOH
2129
8
HOH
HOH
2129
A
HOH
2130
8
HOH
HOH
2130
A
HOH
2131
8
HOH
HOH
2131
A
HOH
2132
8
HOH
HOH
2132
A
HOH
2133
8
HOH
HOH
2133
A
HOH
2134
8
HOH
HOH
2134
A
HOH
2135
8
HOH
HOH
2135
A
HOH
2136
8
HOH
HOH
2136
A
HOH
2137
8
HOH
HOH
2137
A
HOH
2138
8
HOH
HOH
2138
A
HOH
2139
8
HOH
HOH
2139
A
HOH
2140
8
HOH
HOH
2140
A
HOH
2141
8
HOH
HOH
2141
A
HOH
2142
8
HOH
HOH
2142
A
HOH
2143
8
HOH
HOH
2143
A
HOH
2144
8
HOH
HOH
2144
A
HOH
2145
8
HOH
HOH
2145
A
HOH
2146
8
HOH
HOH
2146
A
HOH
2147
8
HOH
HOH
2147
A
HOH
2148
8
HOH
HOH
2148
A
HOH
2149
8
HOH
HOH
2149
A
HOH
2150
8
HOH
HOH
2150
A
HOH
2151
8
HOH
HOH
2151
A
HOH
2152
8
HOH
HOH
2152
A
HOH
2153
8
HOH
HOH
2153
A
HOH
2154
8
HOH
HOH
2154
A
HOH
2155
8
HOH
HOH
2155
A
HOH
2156
8
HOH
HOH
2156
A
HOH
2157
8
HOH
HOH
2157
A
HOH
2158
8
HOH
HOH
2158
A
HOH
2159
8
HOH
HOH
2159
A
HOH
2160
8
HOH
HOH
2160
A
HOH
2161
8
HOH
HOH
2161
A
HOH
2162
8
HOH
HOH
2162
A
HOH
2163
8
HOH
HOH
2163
A
HOH
2164
8
HOH
HOH
2164
A
HOH
2165
8
HOH
HOH
2165
A
HOH
2166
8
HOH
HOH
2166
A
HOH
2167
8
HOH
HOH
2167
A
HOH
2168
8
HOH
HOH
2168
A
HOH
2169
8
HOH
HOH
2169
A
HOH
2170
8
HOH
HOH
2170
A
HOH
2171
8
HOH
HOH
2171
A
HOH
2172
8
HOH
HOH
2172
A
HOH
2173
8
HOH
HOH
2173
A
HOH
2174
8
HOH
HOH
2174
A
HOH
2175
8
HOH
HOH
2175
A
HOH
2176
8
HOH
HOH
2176
A
HOH
2177
8
HOH
HOH
2177
A
HOH
2178
8
HOH
HOH
2178
A
HOH
2179
8
HOH
HOH
2179
A
HOH
2180
8
HOH
HOH
2180
A
HOH
2181
8
HOH
HOH
2181
A
HOH
2182
8
HOH
HOH
2182
A
HOH
2183
8
HOH
HOH
2183
A
HOH
2184
8
HOH
HOH
2184
A
HOH
2185
8
HOH
HOH
2185
A
HOH
2186
8
HOH
HOH
2186
A
HOH
2187
8
HOH
HOH
2187
A
HOH
2188
8
HOH
HOH
2188
A
HOH
2189
8
HOH
HOH
2189
A
HOH
2190
8
HOH
HOH
2190
A
HOH
2191
8
HOH
HOH
2191
A
HOH
2192
8
HOH
HOH
2192
A
HOH
2193
8
HOH
HOH
2193
A
HOH
2194
8
HOH
HOH
2194
A
HOH
2195
8
HOH
HOH
2195
A
HOH
2196
8
HOH
HOH
2196
A
HOH
2197
8
HOH
HOH
2197
A
HOH
2198
8
HOH
HOH
2198
A
HOH
2001
8
HOH
HOH
2001
P
HOH
2002
8
HOH
HOH
2002
P
MET
1
n
1
MET
1
A
LYS
2
n
2
LYS
2
A
MET
3
n
3
MET
3
A
LYS
4
n
4
LYS
4
A
GLU
5
n
5
GLU
5
A
PHE
6
n
6
PHE
6
A
LEU
7
n
7
LEU
7
A
ASP
8
n
8
ASP
8
A
LEU
9
n
9
LEU
9
A
LEU
10
n
10
LEU
10
A
ASN
11
n
11
ASN
11
A
GLU
12
n
12
GLU
12
A
SER
13
n
13
SER
13
A
ARG
14
n
14
ARG
14
A
LEU
15
n
15
LEU
15
A
THR
16
n
16
THR
16
A
VAL
17
n
17
VAL
17
A
THR
18
n
18
THR
18
A
LEU
19
n
19
LEU
19
A
THR
20
n
20
THR
20
A
GLY
21
n
21
GLY
21
A
ALA
22
n
22
ALA
22
A
GLY
23
n
23
GLY
23
A
ILE
24
n
24
ILE
24
A
SER
25
n
25
SER
25
A
THR
26
n
26
THR
26
A
PRO
27
n
27
PRO
27
A
SER
28
n
28
SER
28
A
GLY
29
n
29
GLY
29
A
ILE
30
n
30
ILE
30
A
PRO
31
n
31
PRO
31
A
ASP
32
n
32
ASP
32
A
PHE
33
n
33
PHE
33
A
n
34
34
A
n
35
35
A
n
36
36
A
n
37
37
A
n
38
38
A
n
39
39
A
n
40
40
A
n
41
41
A
n
42
42
A
TYR
43
n
43
TYR
43
A
SER
44
n
44
SER
44
A
GLN
45
n
45
GLN
45
A
ASN
46
n
46
ASN
46
A
VAL
47
n
47
VAL
47
A
PHE
48
n
48
PHE
48
A
ASP
49
n
49
ASP
49
A
ILE
50
n
50
ILE
50
A
ASP
51
n
51
ASP
51
A
PHE
52
n
52
PHE
52
A
PHE
53
n
53
PHE
53
A
TYR
54
n
54
TYR
54
A
SER
55
n
55
SER
55
A
HIS
56
n
56
HIS
56
A
PRO
57
n
57
PRO
57
A
GLU
58
n
58
GLU
58
A
GLU
59
n
59
GLU
59
A
PHE
60
n
60
PHE
60
A
TYR
61
n
61
TYR
61
A
ARG
62
n
62
ARG
62
A
PHE
63
n
63
PHE
63
A
ALA
64
n
64
ALA
64
A
LYS
65
n
65
LYS
65
A
GLU
66
n
66
GLU
66
A
GLY
67
n
67
GLY
67
A
ILE
68
n
68
ILE
68
A
PHE
69
n
69
PHE
69
A
PRO
70
n
70
PRO
70
A
MET
71
n
71
MET
71
A
LEU
72
n
72
LEU
72
A
GLN
73
n
73
GLN
73
A
ALA
74
n
74
ALA
74
A
LYS
75
n
75
LYS
75
A
PRO
76
n
76
PRO
76
A
ASN
77
n
77
ASN
77
A
LEU
78
n
78
LEU
78
A
ALA
79
n
79
ALA
79
A
HIS
80
n
80
HIS
80
A
VAL
81
n
81
VAL
81
A
LEU
82
n
82
LEU
82
A
LEU
83
n
83
LEU
83
A
ALA
84
n
84
ALA
84
A
LYS
85
n
85
LYS
85
A
LEU
86
n
86
LEU
86
A
GLU
87
n
87
GLU
87
A
GLU
88
n
88
GLU
88
A
LYS
89
n
89
LYS
89
A
GLY
90
n
90
GLY
90
A
LEU
91
n
91
LEU
91
A
ILE
92
n
92
ILE
92
A
GLU
93
n
93
GLU
93
A
ALA
94
n
94
ALA
94
A
VAL
95
n
95
VAL
95
A
ILE
96
n
96
ILE
96
A
THR
97
n
97
THR
97
A
GLN
98
n
98
GLN
98
A
ASN
99
n
99
ASN
99
A
ILE
100
n
100
ILE
100
A
ASP
101
n
101
ASP
101
A
ARG
102
n
102
ARG
102
A
LEU
103
n
103
LEU
103
A
HIS
104
n
104
HIS
104
A
GLN
105
n
105
GLN
105
A
ARG
106
n
106
ARG
106
A
ALA
107
n
107
ALA
107
A
GLY
108
n
108
GLY
108
A
SER
109
n
109
SER
109
A
LYS
110
n
110
LYS
110
A
LYS
111
n
111
LYS
111
A
VAL
112
n
112
VAL
112
A
ILE
113
n
113
ILE
113
A
GLU
114
n
114
GLU
114
A
LEU
115
n
115
LEU
115
A
HIS
116
n
116
HIS
116
A
GLY
117
n
117
GLY
117
A
ASN
118
n
118
ASN
118
A
VAL
119
n
119
VAL
119
A
GLU
120
n
120
GLU
120
A
GLU
121
n
121
GLU
121
A
TYR
122
n
122
TYR
122
A
TYR
123
n
123
TYR
123
A
CYS
124
n
124
CYS
124
A
VAL
125
n
125
VAL
125
A
ARG
126
n
126
ARG
126
A
CYS
127
n
127
CYS
127
A
GLU
128
n
128
GLU
128
A
LYS
129
n
129
LYS
129
A
LYS
130
n
130
LYS
130
A
TYR
131
n
131
TYR
131
A
THR
132
n
132
THR
132
A
VAL
133
n
133
VAL
133
A
GLU
134
n
134
GLU
134
A
ASP
135
n
135
ASP
135
A
VAL
136
n
136
VAL
136
A
ILE
137
n
137
ILE
137
A
LYS
138
n
138
LYS
138
A
LYS
139
n
139
LYS
139
A
LEU
140
n
140
LEU
140
A
GLU
141
n
141
GLU
141
A
SER
142
n
142
SER
142
A
SER
143
n
143
SER
143
A
ASP
144
n
144
ASP
144
A
VAL
145
n
145
VAL
145
A
PRO
146
n
146
PRO
146
A
LEU
147
n
147
LEU
147
A
CYS
148
n
148
CYS
148
A
ASP
149
n
149
ASP
149
A
ASP
150
n
150
ASP
150
A
CYS
151
n
151
CYS
151
A
ASN
152
n
152
ASN
152
A
SER
153
n
153
SER
153
A
LEU
154
n
154
LEU
154
A
ILE
155
n
155
ILE
155
A
ARG
156
n
156
ARG
156
A
PRO
157
n
157
PRO
157
A
ASN
158
n
158
ASN
158
A
ILE
159
n
159
ILE
159
A
VAL
160
n
160
VAL
160
A
PHE
161
n
161
PHE
161
A
PHE
162
n
162
PHE
162
A
GLY
163
n
163
GLY
163
A
GLU
164
n
164
GLU
164
A
ASN
165
n
165
ASN
165
A
LEU
166
n
166
LEU
166
A
PRO
167
n
167
PRO
167
A
GLN
168
n
168
GLN
168
A
ASP
169
n
169
ASP
169
A
ALA
170
n
170
ALA
170
A
LEU
171
n
171
LEU
171
A
ARG
172
n
172
ARG
172
A
GLU
173
n
173
GLU
173
A
ALA
174
n
174
ALA
174
A
ILE
175
n
175
ILE
175
A
GLY
176
n
176
GLY
176
A
LEU
177
n
177
LEU
177
A
SER
178
n
178
SER
178
A
SER
179
n
179
SER
179
A
ARG
180
n
180
ARG
180
A
ALA
181
n
181
ALA
181
A
SER
182
n
182
SER
182
A
LEU
183
n
183
LEU
183
A
MET
184
n
184
MET
184
A
ILE
185
n
185
ILE
185
A
VAL
186
n
186
VAL
186
A
LEU
187
n
187
LEU
187
A
GLY
188
n
188
GLY
188
A
SER
189
n
189
SER
189
A
SER
190
n
190
SER
190
A
LEU
191
n
191
LEU
191
A
VAL
192
n
192
VAL
192
A
VAL
193
n
193
VAL
193
A
TYR
194
n
194
TYR
194
A
PRO
195
n
195
PRO
195
A
ALA
196
n
196
ALA
196
A
ALA
197
n
197
ALA
197
A
GLU
198
n
198
GLU
198
A
LEU
199
n
199
LEU
199
A
PRO
200
n
200
PRO
200
A
LEU
201
n
201
LEU
201
A
ILE
202
n
202
ILE
202
A
THR
203
n
203
THR
203
A
VAL
204
n
204
VAL
204
A
ARG
205
n
205
ARG
205
A
SER
206
n
206
SER
206
A
GLY
207
n
207
GLY
207
A
GLY
208
n
208
GLY
208
A
LYS
209
n
209
LYS
209
A
LEU
210
n
210
LEU
210
A
VAL
211
n
211
VAL
211
A
ILE
212
n
212
ILE
212
A
VAL
213
n
213
VAL
213
A
ASN
214
n
214
ASN
214
A
LEU
215
n
215
LEU
215
A
GLY
216
n
216
GLY
216
A
GLU
217
n
217
GLU
217
A
THR
218
n
218
THR
218
A
PRO
219
n
219
PRO
219
A
PHE
220
n
220
PHE
220
A
ASP
221
n
221
ASP
221
A
ASP
222
n
222
ASP
222
A
ILE
223
n
223
ILE
223
A
ALA
224
n
224
ALA
224
A
THR
225
n
225
THR
225
A
LEU
226
n
226
LEU
226
A
LYS
227
n
227
LYS
227
A
TYR
228
n
228
TYR
228
A
ASN
229
n
229
ASN
229
A
MET
230
n
230
MET
230
A
ASP
231
n
231
ASP
231
A
VAL
232
n
232
VAL
232
A
VAL
233
n
233
VAL
233
A
GLU
234
n
234
GLU
234
A
PHE
235
n
235
PHE
235
A
ALA
236
n
236
ALA
236
A
ARG
237
n
237
ARG
237
A
ARG
238
n
238
ARG
238
A
VAL
239
n
239
VAL
239
A
MET
240
n
240
MET
240
A
GLU
241
n
241
GLU
241
A
GLU
242
n
242
GLU
242
A
GLY
243
n
243
GLY
243
A
GLY
244
n
244
GLY
244
A
ILE
245
n
245
ILE
245
A
SER
246
n
246
SER
246
A
ARG
379
n
1
ARG
379
P
HIS
380
n
2
HIS
380
P
LYS
381
n
3
LYS
381
P
ALY
382
n
4
ALY
382
P
LEU
383
n
5
LEU
383
P
MET
384
n
6
MET
384
P
PHE
385
n
7
PHE
385
P
n
8
386
P
0.3967
-0.0641
-0.0938
0.9262
-0.1796
1.4542
-0.0708
0.0095
-0.0642
-0.0765
0.0251
-0.0017
0.1222
-0.0331
0.0457
0.0277
-0.0097
0.0188
0.0214
-0.0103
0.0304
refined
-3.2233
9.0989
-9.9847
X-RAY DIFFRACTION
0.6579
-0.3413
0.6045
1.7050
-0.9340
2.5823
-0.0068
0.0934
0.0952
0.1389
-0.1019
-0.2174
-0.2149
-0.0616
0.1087
0.0672
-0.0014
0.0026
0.0343
0.0217
0.0422
refined
5.1050
35.9194
-15.1737
X-RAY DIFFRACTION
A
1
A
36
X-RAY DIFFRACTION
1
A
75
A
115
X-RAY DIFFRACTION
1
A
166
A
246
X-RAY DIFFRACTION
1
A
44
A
73
X-RAY DIFFRACTION
2
A
116
A
161
X-RAY DIFFRACTION
2
author_and_software_defined_assembly
PISA
2
dimeric
1950
-6.6
11320
A
CYS
124
A
SG
CYS
124
1_555
A
ZN
1250
F
ZN
ZN
1_555
A
CYS
127
A
SG
CYS
127
1_555
114.5
A
CYS
124
A
SG
CYS
124
1_555
A
ZN
1250
F
ZN
ZN
1_555
A
CYS
148
A
SG
CYS
148
1_555
100.9
A
CYS
127
A
SG
CYS
127
1_555
A
ZN
1250
F
ZN
ZN
1_555
A
CYS
148
A
SG
CYS
148
1_555
109.1
A
CYS
124
A
SG
CYS
124
1_555
A
ZN
1250
F
ZN
ZN
1_555
A
CYS
151
A
SG
CYS
151
1_555
95.6
A
CYS
127
A
SG
CYS
127
1_555
A
ZN
1250
F
ZN
ZN
1_555
A
CYS
151
A
SG
CYS
151
1_555
120.5
A
CYS
148
A
SG
CYS
148
1_555
A
ZN
1250
F
ZN
ZN
1_555
A
CYS
151
A
SG
CYS
151
1_555
113.8
P
ALY
382
N(6)-ACETYLLYSINE
B
ALY
4
LYS
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ILE
113
A
N
ILE
113
A
O
VAL
95
A
O
VAL
95
A
N
ILE
96
A
N
ILE
96
A
O
THR
18
A
O
THR
18
A
N
VAL
17
A
N
VAL
17
A
O
LEU
183
A
O
LEU
183
A
N
MET
184
A
N
MET
184
A
O
LYS
209
A
O
LYS
209
A
N
ILE
212
A
N
ILE
212
A
O
LEU
226
A
O
LEU
226
A
N
TYR
131
A
N
TYR
131
A
O
TYR
122
A
O
TYR
122
A
N
TYR
123
A
N
TYR
123
A
O
ARG
156
A
O
ARG
156
A
N
TYR
194
A
N
TYR
194
P
O
LEU
383
B
O
LEU
5
1
A
CG
GLN
45
A
CG
GLN
45
1
Y
1
A
CD
GLN
45
A
CD
GLN
45
1
Y
1
A
OE1
GLN
45
A
OE1
GLN
45
1
Y
1
A
NE2
GLN
45
A
NE2
GLN
45
1
Y
1
A
ARG
34
A
ARG
34
1
Y
1
A
GLY
35
A
GLY
35
1
Y
1
A
PRO
36
A
PRO
36
1
Y
1
A
ASN
37
A
ASN
37
1
Y
1
A
GLY
38
A
GLY
38
1
Y
1
A
ILE
39
A
ILE
39
1
Y
1
A
TYR
40
A
TYR
40
1
Y
1
A
LYS
41
A
LYS
41
1
Y
1
A
LYS
42
A
LYS
42
1
Y
1
P
LYS
386
B
LYS
8
1
Y
1
A
A
O
O
HOH
HOH
2146
2147
2.01
1
A
A
O
O
HOH
HOH
2064
2068
2.15
1
A
A
ILE
SER
245
246
148.91
1
5.76
0.90
118.30
124.06
A
A
A
CB
CG
OD1
ASP
ASP
ASP
51
51
51
N
1
6.00
0.90
118.30
124.30
A
A
A
CB
CG
OD1
ASP
ASP
ASP
222
222
222
N
1
-14.36
1.60
100.20
85.84
A
A
A
CG
SD
CE
MET
MET
MET
240
240
240
N
1
A
A
OE2
O
GLU
HOH
121
2191
2.18
B
1_555
4_555
1
A
SER
44
71.89
115.99
1
A
ILE
68
-130.22
-59.65
26.528
0.99
0.00
0.00
-0.16
0.00
-0.83
0.961
0.939
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. U VALUES WITH TLS ADDED
0.19357
0.15930
0.16104
1.90
40.32
1241
23580
5.0
99.84
4.883
0.077
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.124
0.118
0.80
0.80
1.20
PDB ENTRY 2H4F
MAXIMUM LIKELIHOOD
MASK
1.90
40.32
200
2233
105
0
1928
0.020
0.020
2183
0.003
0.020
2112
2.065
2.047
2978
1.010
3.008
4885
6.187
5.000
269
38.253
23.895
95
14.022
15.000
389
19.676
15.000
16
0.118
0.200
338
0.010
0.021
2391
0.001
0.020
485
2.122
1.819
1010
2.115
1.814
1009
3.258
2.694
1268
2.829
2.261
1173
0.239
0.208
1.949
91
1746
20
100.00
1.90
25.00
4BUZ
24822
-3.0
0.06
1
20.70
4.4
99.8
0.47
1.90
2.00
3.50
1
4.4
100.0
refinement
REFMAC
5.7.0032
data reduction
XDS
data scaling
XSCALE
phasing
PHASER
SIR2 COMPLEX STRUCTURE MIXTURE OF EX-527 INHIBITOR AND REACTION PRODUCTS OR OF REACTION SUBSTRATES P53 PEPTIDE AND NAD
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
6
N
N
7
N
N
8
N
N
8
N
N
A
MET
3
A
MET
3
HELX_P
A
SER
13
A
SER
13
1
1
11
A
ALA
22
A
ALA
22
HELX_P
A
GLY
29
A
GLY
29
5
2
8
A
ASP
49
A
ASP
49
HELX_P
A
HIS
56
A
HIS
56
1
3
8
A
HIS
56
A
HIS
56
HELX_P
A
ILE
68
A
ILE
68
1
4
13
A
PHE
69
A
PHE
69
HELX_P
A
ALA
74
A
ALA
74
5
5
6
A
ASN
77
A
ASN
77
HELX_P
A
LYS
89
A
LYS
89
1
6
13
A
ARG
102
A
ARG
102
HELX_P
A
ALA
107
A
ALA
107
1
7
6
A
VAL
133
A
VAL
133
HELX_P
A
LEU
140
A
LEU
140
1
8
8
A
PRO
167
A
PRO
167
HELX_P
A
ALA
181
A
ALA
181
1
9
15
A
ALA
197
A
ALA
197
HELX_P
A
SER
206
A
SER
206
1
10
10
A
PHE
220
A
PHE
220
HELX_P
A
ALA
224
A
ALA
224
5
11
5
A
ASP
231
A
ASP
231
HELX_P
A
GLY
243
A
GLY
243
1
12
13
covale
1.323
both
P
LYS
381
B
C
LYS
3
1_555
P
ALY
382
B
N
ALY
4
1_555
covale
1.322
both
P
ALY
382
B
C
ALY
4
1_555
P
LEU
383
B
N
LEU
5
1_555
metalc
2.336
A
CYS
124
A
SG
CYS
124
1_555
A
ZN
1250
F
ZN
ZN
1_555
metalc
2.292
A
CYS
127
A
SG
CYS
127
1_555
A
ZN
1250
F
ZN
ZN
1_555
metalc
2.285
A
CYS
148
A
SG
CYS
148
1_555
A
ZN
1250
F
ZN
ZN
1_555
metalc
2.378
A
CYS
151
A
SG
CYS
151
1_555
A
ZN
1250
F
ZN
ZN
1_555
HYDROLASE
HYDROLASE, NAD-DEPENDENT DEACETYLASE, SIRTUIN, INHIBITOR COMPLEX, EX-527, RUNNING REACTION
A
TYR
194
A
TYR
194
1
A
PRO
195
A
PRO
195
1.05
NPD_THEMA
UNP
1
Q9WYW0
P53_HUMAN
UNP
2
P04637
1
246
4BUZ
1
246
Q9WYW0
A
1
1
246
379
386
4BUZ
379
386
P04637
P
2
1
8
6
3
2
parallel
parallel
parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
A
VAL
112
A
VAL
112
A
GLU
114
A
GLU
114
A
ALA
94
A
ALA
94
A
THR
97
A
THR
97
A
THR
16
A
THR
16
A
THR
20
A
THR
20
A
LEU
183
A
LEU
183
A
LEU
187
A
LEU
187
A
LYS
209
A
LYS
209
A
VAL
213
A
VAL
213
A
LEU
226
A
LEU
226
A
TYR
228
A
TYR
228
A
LYS
130
A
LYS
130
A
THR
132
A
THR
132
A
GLY
117
A
GLY
117
A
CYS
124
A
CYS
124
A
ILE
155
A
ILE
155
A
ILE
159
A
ILE
159
A
VAL
193
A
VAL
193
A
TYR
194
A
TYR
194
P
LEU
383
B
LEU
5
P
MET
384
B
MET
6
BINDING SITE FOR RESIDUE OCZ A 1247
A
OCZ
1247
Software
13
BINDING SITE FOR RESIDUE NAD A 1248
A
NAD
1248
Software
28
BINDING SITE FOR RESIDUE OAD A 1249
A
OAD
1249
Software
25
BINDING SITE FOR RESIDUE ZN A 1250
A
ZN
1250
Software
4
BINDING SITE FOR RESIDUE EDO A 1251
A
EDO
1251
Software
4
A
PRO
31
A
PRO
31
13
1_555
A
PHE
33
A
PHE
33
13
1_555
A
PHE
48
A
PHE
48
13
1_555
A
MET
71
A
MET
71
13
1_555
A
GLN
98
A
GLN
98
13
1_555
A
ASN
99
A
ASN
99
13
1_555
A
ILE
100
A
ILE
100
13
1_555
A
ASP
101
A
ASP
101
13
1_555
A
ILE
159
A
ILE
159
13
1_555
A
VAL
160
A
VAL
160
13
1_555
A
HOH
2020
H
HOH
13
1_555
A
HOH
2021
H
HOH
13
1_555
P
ALY
382
B
ALY
4
13
1_555
A
GLY
21
A
GLY
21
28
1_555
A
ALA
22
A
ALA
22
28
1_555
A
GLY
23
A
GLY
23
28
1_555
A
THR
26
A
THR
26
28
1_555
A
PRO
27
A
PRO
27
28
1_555
A
ILE
30
A
ILE
30
28
1_555
A
PRO
31
A
PRO
31
28
1_555
A
ASP
32
A
ASP
32
28
1_555
A
PHE
33
A
PHE
33
28
1_555
A
GLN
98
A
GLN
98
28
1_555
A
ASN
99
A
ASN
99
28
1_555
A
ILE
100
A
ILE
100
28
1_555
A
ASP
101
A
ASP
101
28
1_555
A
HIS
116
A
HIS
116
28
1_555
A
GLY
188
A
GLY
188
28
1_555
A
SER
189
A
SER
189
28
1_555
A
SER
190
A
SER
190
28
1_555
A
ASN
214
A
ASN
214
28
1_555
A
LEU
215
A
LEU
215
28
1_555
A
MET
230
A
MET
230
28
1_555
A
ASP
231
A
ASP
231
28
1_555
A
VAL
232
A
VAL
232
28
1_555
A
HOH
2020
H
HOH
28
1_555
A
HOH
2021
H
HOH
28
1_555
A
HOH
2161
H
HOH
28
1_555
A
HOH
2196
H
HOH
28
1_555
A
HOH
2197
H
HOH
28
1_555
P
ALY
382
B
ALY
4
28
1_555
A
GLY
21
A
GLY
21
25
1_555
A
ALA
22
A
ALA
22
25
1_555
A
GLY
23
A
GLY
23
25
1_555
A
THR
26
A
THR
26
25
1_555
A
PRO
27
A
PRO
27
25
1_555
A
ASP
32
A
ASP
32
25
1_555
A
PHE
33
A
PHE
33
25
1_555
A
PHE
48
A
PHE
48
25
1_555
A
HIS
116
A
HIS
116
25
1_555
A
VAL
160
A
VAL
160
25
1_555
A
PHE
162
A
PHE
162
25
1_555
A
GLY
188
A
GLY
188
25
1_555
A
SER
189
A
SER
189
25
1_555
A
SER
190
A
SER
190
25
1_555
A
VAL
193
A
VAL
193
25
1_555
A
ASN
214
A
ASN
214
25
1_555
A
LEU
215
A
LEU
215
25
1_555
A
MET
230
A
MET
230
25
1_555
A
ASP
231
A
ASP
231
25
1_555
A
VAL
232
A
VAL
232
25
1_555
A
HOH
2020
H
HOH
25
1_555
A
HOH
2161
H
HOH
25
1_555
A
HOH
2196
H
HOH
25
1_555
A
HOH
2197
H
HOH
25
1_555
P
ALY
382
B
ALY
4
25
1_555
A
CYS
124
A
CYS
124
4
1_555
A
CYS
127
A
CYS
127
4
1_555
A
CYS
148
A
CYS
148
4
1_555
A
CYS
151
A
CYS
151
4
1_555
A
TYR
123
A
TYR
123
4
1_555
A
LYS
130
A
LYS
130
4
1_555
A
HOH
2107
H
HOH
4
1_555
A
HOH
2114
H
HOH
4
1_555
19
P 21 21 21