0.010762
0.006213
0.000000
0.000000
0.012427
0.000000
0.000000
0.000000
0.012082
0.00000
0.00000
0.00000
Schmelz, S.
Kuegler, J.
Collins, J.
Heinz, D.W.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
120.00
92.920
92.920
82.770
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cl -1
35.453
CHLORIDE ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
K 1
39.098
POTASSIUM ION
non-polymer
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
CL
N
75
N
N
N
76
R
C
N
77
N
C
N
78
N
O
N
79
N
C
N
80
N
S
N
81
N
O
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
N
N
90
S
C
N
91
N
C
N
92
N
O
N
93
N
C
N
94
N
C
N
95
N
C
N
96
N
O
N
97
N
N
N
98
N
O
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
N
N
110
S
C
N
111
N
C
N
112
N
O
N
113
N
C
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
O
N
118
N
O
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
N
N
129
N
C
N
130
N
C
N
131
N
O
N
132
N
O
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
N
N
139
S
C
N
140
N
C
N
141
N
O
N
142
N
C
Y
143
N
C
Y
144
N
N
Y
145
N
C
Y
146
N
C
Y
147
N
N
N
148
N
O
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
O
N
160
N
H
N
161
N
H
N
162
N
N
N
163
S
C
N
164
N
C
N
165
N
O
N
166
S
C
N
167
N
C
N
168
N
C
N
169
N
C
N
170
N
O
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
K
N
185
N
N
N
186
S
C
N
187
N
C
N
188
N
O
N
189
N
C
N
190
N
C
N
191
N
C
N
192
N
C
N
193
N
O
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
N
N
208
S
C
N
209
N
C
N
210
N
O
N
211
N
C
N
212
N
C
N
213
N
C
N
214
N
C
N
215
N
N
N
216
N
O
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
N
N
233
S
C
N
234
N
C
N
235
N
O
N
236
N
C
N
237
N
C
N
238
N
S
N
239
N
C
N
240
N
O
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
N
N
253
S
C
N
254
N
C
N
255
N
O
N
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
Y
261
N
C
Y
262
N
C
N
263
N
O
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
N
N
276
S
C
N
277
N
C
N
278
N
O
N
279
N
C
N
280
N
C
N
281
N
C
N
282
N
O
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
N
N
293
S
C
N
294
N
C
N
295
N
O
N
296
N
C
N
297
N
O
N
298
N
O
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
N
N
307
S
C
N
308
N
C
N
309
N
O
N
310
R
C
N
311
N
O
N
312
N
C
N
313
N
O
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
N
N
324
S
C
N
325
N
C
N
326
N
O
N
327
N
C
Y
328
N
C
Y
329
N
C
Y
330
N
C
Y
331
N
N
Y
332
N
C
Y
333
N
C
Y
334
N
C
Y
335
N
C
Y
336
N
C
N
337
N
O
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
N
N
351
S
C
N
352
N
C
N
353
N
O
N
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
Y
359
N
C
Y
360
N
C
N
361
N
O
N
362
N
O
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
N
N
375
S
C
N
376
N
C
N
377
N
O
N
378
N
C
N
379
N
C
N
380
N
C
N
381
N
O
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
doub
N
329
N
sing
Y
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
Y
345
N
doub
Y
346
N
sing
Y
347
N
sing
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
doub
N
352
N
sing
Y
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
doub
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
287
39224
10.1074/JBC.M112.393843
22965230
High Affinity Peptide Inhibitors of the Hepatitis C Virus Ns3-4A Protease Refractory to Common Resistant Mutants.
2012
10.2210/pdb4a1v/pdb
pdb_00004a1v
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2011-06-16
MARMOSAIC 225 mm CCD
SINGLE WAVELENGTH
M
x-ray
1
0.91841
1.0
14.1
BESSY
0.91841
SYNCHROTRON
BESSY BEAMLINE 14.1
FUSION PROTEIN OF 4A (1678-1690) WITH NS3 (1028-1206)
21385.422
NON-STRUCTURAL PROTEIN 4A, SERINE PROTEASE NS3
3.4.21.98, 3.6.1.15, 3.6.4.13
RESIDUES 1678-1690,1028-1206
2
man
polymer
MUTATED G4D, R5E
2203.383
CP5-46A-4D5E
2
syn
polymer
35.453
CHLORIDE ION
3
syn
non-polymer
39.098
POTASSIUM ION
1
syn
non-polymer
18.015
water
80
nat
water
NS4A, P8, HEPACIVIRIN, NS3P, P70
no
no
GSVVIVGRIILSGKGGPITAYSQQTRGLLGCIITSLTGRDRNQVEGEVQVVSTATQSFLATCVNGVCWTVYHGAGSKTLA
GPKGPITQMYTNVDQDLVGWQAPPGARSLTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLLSPRPVSYLKGSSGGPLLC
PSGHAVGIFRAAVCTRGVAKAVDFVPVESMETTMRGSHHHHHH
GSVVIVGRIILSGKGGPITAYSQQTRGLLGCIITSLTGRDRNQVEGEVQVVSTATQSFLATCVNGVCWTVYHGAGSKTLA
GPKGPITQMYTNVDQDLVGWQAPPGARSLTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLLSPRPVSYLKGSSGGPLLC
PSGHAVGIFRAAVCTRGVAKAVDFVPVESMETTMRGSHHHHHH
A,B
polypeptide(L)
no
no
GELDELVYLLDGPGYDPIHS
GELDELVYLLDGPGYDPIHS
C,D
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
HCV REPLICON I389/NS3-3'UTR (AJ242654)
31647
HEPATITIS C VIRUS SUBTYPE 1B
469008
ESCHERICHIA COLI
BL21(DE3)
ROSETTA2
PET28C
PLASMID
1
2.32
46.91
NONE
0.1 M MES PH 6.0 OR 0.1 M NA-CITRATE PH 5.1 AND 2.2M KCL, 5% ISOPROPANOL
chem_comp_atom
chem_comp_bond
database_2
pdbx_database_status
pdbx_initial_refinement_model
struct_sheet
struct_site
repository
Initial release
Database references
Structure summary
Data collection
Database references
Derived calculations
Other
Refinement description
1
0
2012-09-19
1
1
2012-11-21
1
2
2023-12-20
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_sf
_struct_sheet.number_strands
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
CRYSTAL STRUCTURE OF THE HEPATITIS C VIRUS NS3 PROTEASE IN COMPLEX WITH A PEPTIDOMIMETIC INHIBITOR
INHIBITION OF THE HEPATITIS C VIRUS NS3/4A PROTEASE. THE CRYSTALSTRUCTURES OF TWO PROTEASE-INHIBITOR COMPLEXES
INHIBITION OF THE HEPATITIS C VIRUS NS3/4A PROTEASE. THE CRYSTALSTRUCTURES OF TWO PROTEASE-INHIBITOR COMPLEXES (INHIBITOR II)
INHIBITION OF THE HEPATITIS C VIRUS NS3/4A PROTEASE. THE CRYSTALSTRUCTURES OF TWO PROTEASE-INHIBITOR COMPLEXES (INHIBITOR I)
CO-COMPLEX OF THE OF NS3-4A PROTEASE WITH THE INHIBITORY PEPTIDE CP5-46-A (IN-HOUSE DATA)
CO-COMPLEX STRUCTURE OF NS3-4A PROTEASE WITH THE INHIBITORY PEPTIDE CP5-46-A (SYNCHROTRON DATA)
SHEET
DETERMINATION METHOD: DSSP
THE SHEETS PRESENTED AS "AB" IN EACH CHAIN ON SHEET RECORDS
BELOW IS ACTUALLY AN 6-STRANDED BARREL THIS IS REPRESENTED BY
A 7-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS
ARE IDENTICAL.
THE SHEETS PRESENTED AS "BB" IN EACH CHAIN ON SHEET RECORDS
BELOW IS ACTUALLY AN 6-STRANDED BARREL THIS IS REPRESENTED BY
A 7-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS
ARE IDENTICAL.
PDBE
Y
PDBE
2011-09-20
REL
REL
CL
CHLORIDE ION
K
POTASSIUM ION
HOH
water
32630
SYNTHETIC CONSTRUCT
sample
SEQUENCE DISCREPANCIES HAVE BEEN INDICATED BY AUTHOR AS
NATURAL VARIANTS, AS THE REPLICON WAS CONSTRUCTED FROM THE
CONSENSUS-GENOME OF HCV GENOTYPE 1B.
1DXP
PDB ENTRY 1DXP
PDB
experimental model
CL
1180
3
CL
CL
1180
A
K
1181
4
K
K
1181
A
CL
1181
3
CL
CL
1181
B
CL
1182
3
CL
CL
1182
B
HOH
2001
5
HOH
HOH
2001
A
HOH
2002
5
HOH
HOH
2002
A
HOH
2003
5
HOH
HOH
2003
A
HOH
2004
5
HOH
HOH
2004
A
HOH
2005
5
HOH
HOH
2005
A
HOH
2006
5
HOH
HOH
2006
A
HOH
2007
5
HOH
HOH
2007
A
HOH
2008
5
HOH
HOH
2008
A
HOH
2009
5
HOH
HOH
2009
A
HOH
2010
5
HOH
HOH
2010
A
HOH
2011
5
HOH
HOH
2011
A
HOH
2012
5
HOH
HOH
2012
A
HOH
2013
5
HOH
HOH
2013
A
HOH
2014
5
HOH
HOH
2014
A
HOH
2015
5
HOH
HOH
2015
A
HOH
2016
5
HOH
HOH
2016
A
HOH
2017
5
HOH
HOH
2017
A
HOH
2018
5
HOH
HOH
2018
A
HOH
2019
5
HOH
HOH
2019
A
HOH
2020
5
HOH
HOH
2020
A
HOH
2021
5
HOH
HOH
2021
A
HOH
2022
5
HOH
HOH
2022
A
HOH
2023
5
HOH
HOH
2023
A
HOH
2024
5
HOH
HOH
2024
A
HOH
2025
5
HOH
HOH
2025
A
HOH
2026
5
HOH
HOH
2026
A
HOH
2027
5
HOH
HOH
2027
A
HOH
2028
5
HOH
HOH
2028
A
HOH
2029
5
HOH
HOH
2029
A
HOH
2030
5
HOH
HOH
2030
A
HOH
2031
5
HOH
HOH
2031
A
HOH
2032
5
HOH
HOH
2032
A
HOH
2033
5
HOH
HOH
2033
A
HOH
2034
5
HOH
HOH
2034
A
HOH
2035
5
HOH
HOH
2035
A
HOH
2036
5
HOH
HOH
2036
A
HOH
2037
5
HOH
HOH
2037
A
HOH
2038
5
HOH
HOH
2038
A
HOH
2039
5
HOH
HOH
2039
A
HOH
2040
5
HOH
HOH
2040
A
HOH
2041
5
HOH
HOH
2041
A
HOH
2042
5
HOH
HOH
2042
A
HOH
2001
5
HOH
HOH
2001
B
HOH
2002
5
HOH
HOH
2002
B
HOH
2003
5
HOH
HOH
2003
B
HOH
2004
5
HOH
HOH
2004
B
HOH
2005
5
HOH
HOH
2005
B
HOH
2006
5
HOH
HOH
2006
B
HOH
2007
5
HOH
HOH
2007
B
HOH
2008
5
HOH
HOH
2008
B
HOH
2009
5
HOH
HOH
2009
B
HOH
2010
5
HOH
HOH
2010
B
HOH
2011
5
HOH
HOH
2011
B
HOH
2012
5
HOH
HOH
2012
B
HOH
2013
5
HOH
HOH
2013
B
HOH
2014
5
HOH
HOH
2014
B
HOH
2015
5
HOH
HOH
2015
B
HOH
2016
5
HOH
HOH
2016
B
HOH
2017
5
HOH
HOH
2017
B
HOH
2018
5
HOH
HOH
2018
B
HOH
2019
5
HOH
HOH
2019
B
HOH
2020
5
HOH
HOH
2020
B
HOH
2021
5
HOH
HOH
2021
B
HOH
2022
5
HOH
HOH
2022
B
HOH
2023
5
HOH
HOH
2023
B
HOH
2024
5
HOH
HOH
2024
B
HOH
2025
5
HOH
HOH
2025
B
HOH
2026
5
HOH
HOH
2026
B
HOH
2027
5
HOH
HOH
2027
B
HOH
2028
5
HOH
HOH
2028
B
HOH
2029
5
HOH
HOH
2029
B
HOH
2030
5
HOH
HOH
2030
B
HOH
2031
5
HOH
HOH
2031
B
HOH
2032
5
HOH
HOH
2032
B
HOH
2033
5
HOH
HOH
2033
B
HOH
2034
5
HOH
HOH
2034
B
HOH
2035
5
HOH
HOH
2035
B
HOH
2036
5
HOH
HOH
2036
B
HOH
2001
5
HOH
HOH
2001
C
HOH
2001
5
HOH
HOH
2001
D
GLY
-14
n
1
GLY
-14
A
SER
-13
n
2
SER
-13
A
VAL
-12
n
3
VAL
-12
A
VAL
-11
n
4
VAL
-11
A
ILE
-10
n
5
ILE
-10
A
VAL
-9
n
6
VAL
-9
A
GLY
-8
n
7
GLY
-8
A
ARG
-7
n
8
ARG
-7
A
ILE
-6
n
9
ILE
-6
A
ILE
-5
n
10
ILE
-5
A
LEU
-4
n
11
LEU
-4
A
SER
-3
n
12
SER
-3
A
n
13
-2
A
n
14
-1
A
n
15
0
A
n
16
1
A
PRO
2
n
17
PRO
2
A
ILE
3
n
18
ILE
3
A
THR
4
n
19
THR
4
A
ALA
5
n
20
ALA
5
A
TYR
6
n
21
TYR
6
A
SER
7
n
22
SER
7
A
GLN
8
n
23
GLN
8
A
GLN
9
n
24
GLN
9
A
THR
10
n
25
THR
10
A
ARG
11
n
26
ARG
11
A
GLY
12
n
27
GLY
12
A
LEU
13
n
28
LEU
13
A
LEU
14
n
29
LEU
14
A
GLY
15
n
30
GLY
15
A
CYS
16
n
31
CYS
16
A
ILE
17
n
32
ILE
17
A
ILE
18
n
33
ILE
18
A
THR
19
n
34
THR
19
A
SER
20
n
35
SER
20
A
LEU
21
n
36
LEU
21
A
THR
22
n
37
THR
22
A
GLY
23
n
38
GLY
23
A
ARG
24
n
39
ARG
24
A
ASP
25
n
40
ASP
25
A
ARG
26
n
41
ARG
26
A
ASN
27
n
42
ASN
27
A
GLN
28
n
43
GLN
28
A
VAL
29
n
44
VAL
29
A
GLU
30
n
45
GLU
30
A
GLY
31
n
46
GLY
31
A
GLU
32
n
47
GLU
32
A
VAL
33
n
48
VAL
33
A
GLN
34
n
49
GLN
34
A
VAL
35
n
50
VAL
35
A
VAL
36
n
51
VAL
36
A
SER
37
n
52
SER
37
A
THR
38
n
53
THR
38
A
ALA
39
n
54
ALA
39
A
THR
40
n
55
THR
40
A
GLN
41
n
56
GLN
41
A
SER
42
n
57
SER
42
A
PHE
43
n
58
PHE
43
A
LEU
44
n
59
LEU
44
A
ALA
45
n
60
ALA
45
A
THR
46
n
61
THR
46
A
CYS
47
n
62
CYS
47
A
VAL
48
n
63
VAL
48
A
ASN
49
n
64
ASN
49
A
GLY
50
n
65
GLY
50
A
VAL
51
n
66
VAL
51
A
CYS
52
n
67
CYS
52
A
TRP
53
n
68
TRP
53
A
THR
54
n
69
THR
54
A
VAL
55
n
70
VAL
55
A
TYR
56
n
71
TYR
56
A
HIS
57
n
72
HIS
57
A
GLY
58
n
73
GLY
58
A
ALA
59
n
74
ALA
59
A
GLY
60
n
75
GLY
60
A
SER
61
n
76
SER
61
A
LYS
62
n
77
LYS
62
A
THR
63
n
78
THR
63
A
LEU
64
n
79
LEU
64
A
ALA
65
n
80
ALA
65
A
GLY
66
n
81
GLY
66
A
PRO
67
n
82
PRO
67
A
LYS
68
n
83
LYS
68
A
GLY
69
n
84
GLY
69
A
PRO
70
n
85
PRO
70
A
ILE
71
n
86
ILE
71
A
THR
72
n
87
THR
72
A
GLN
73
n
88
GLN
73
A
MET
74
n
89
MET
74
A
TYR
75
n
90
TYR
75
A
THR
76
n
91
THR
76
A
ASN
77
n
92
ASN
77
A
VAL
78
n
93
VAL
78
A
ASP
79
n
94
ASP
79
A
GLN
80
n
95
GLN
80
A
ASP
81
n
96
ASP
81
A
LEU
82
n
97
LEU
82
A
VAL
83
n
98
VAL
83
A
GLY
84
n
99
GLY
84
A
TRP
85
n
100
TRP
85
A
GLN
86
n
101
GLN
86
A
ALA
87
n
102
ALA
87
A
PRO
88
n
103
PRO
88
A
PRO
89
n
104
PRO
89
A
GLY
90
n
105
GLY
90
A
ALA
91
n
106
ALA
91
A
ARG
92
n
107
ARG
92
A
SER
93
n
108
SER
93
A
LEU
94
n
109
LEU
94
A
THR
95
n
110
THR
95
A
PRO
96
n
111
PRO
96
A
CYS
97
n
112
CYS
97
A
THR
98
n
113
THR
98
A
CYS
99
n
114
CYS
99
A
GLY
100
n
115
GLY
100
A
SER
101
n
116
SER
101
A
SER
102
n
117
SER
102
A
ASP
103
n
118
ASP
103
A
LEU
104
n
119
LEU
104
A
TYR
105
n
120
TYR
105
A
LEU
106
n
121
LEU
106
A
VAL
107
n
122
VAL
107
A
THR
108
n
123
THR
108
A
ARG
109
n
124
ARG
109
A
HIS
110
n
125
HIS
110
A
ALA
111
n
126
ALA
111
A
ASP
112
n
127
ASP
112
A
VAL
113
n
128
VAL
113
A
ILE
114
n
129
ILE
114
A
PRO
115
n
130
PRO
115
A
VAL
116
n
131
VAL
116
A
ARG
117
n
132
ARG
117
A
ARG
118
n
133
ARG
118
A
ARG
119
n
134
ARG
119
A
GLY
120
n
135
GLY
120
A
ASP
121
n
136
ASP
121
A
SER
122
n
137
SER
122
A
ARG
123
n
138
ARG
123
A
GLY
124
n
139
GLY
124
A
SER
125
n
140
SER
125
A
LEU
126
n
141
LEU
126
A
LEU
127
n
142
LEU
127
A
SER
128
n
143
SER
128
A
PRO
129
n
144
PRO
129
A
ARG
130
n
145
ARG
130
A
PRO
131
n
146
PRO
131
A
VAL
132
n
147
VAL
132
A
SER
133
n
148
SER
133
A
TYR
134
n
149
TYR
134
A
LEU
135
n
150
LEU
135
A
LYS
136
n
151
LYS
136
A
GLY
137
n
152
GLY
137
A
SER
138
n
153
SER
138
A
SER
139
n
154
SER
139
A
GLY
140
n
155
GLY
140
A
GLY
141
n
156
GLY
141
A
PRO
142
n
157
PRO
142
A
LEU
143
n
158
LEU
143
A
LEU
144
n
159
LEU
144
A
CYS
145
n
160
CYS
145
A
PRO
146
n
161
PRO
146
A
SER
147
n
162
SER
147
A
GLY
148
n
163
GLY
148
A
HIS
149
n
164
HIS
149
A
ALA
150
n
165
ALA
150
A
VAL
151
n
166
VAL
151
A
GLY
152
n
167
GLY
152
A
ILE
153
n
168
ILE
153
A
PHE
154
n
169
PHE
154
A
ARG
155
n
170
ARG
155
A
ALA
156
n
171
ALA
156
A
ALA
157
n
172
ALA
157
A
VAL
158
n
173
VAL
158
A
CYS
159
n
174
CYS
159
A
THR
160
n
175
THR
160
A
ARG
161
n
176
ARG
161
A
GLY
162
n
177
GLY
162
A
VAL
163
n
178
VAL
163
A
ALA
164
n
179
ALA
164
A
LYS
165
n
180
LYS
165
A
ALA
166
n
181
ALA
166
A
VAL
167
n
182
VAL
167
A
ASP
168
n
183
ASP
168
A
PHE
169
n
184
PHE
169
A
VAL
170
n
185
VAL
170
A
PRO
171
n
186
PRO
171
A
VAL
172
n
187
VAL
172
A
GLU
173
n
188
GLU
173
A
SER
174
n
189
SER
174
A
MET
175
n
190
MET
175
A
GLU
176
n
191
GLU
176
A
THR
177
n
192
THR
177
A
THR
178
n
193
THR
178
A
MET
179
n
194
MET
179
A
n
195
180
A
n
196
181
A
n
197
182
A
n
198
183
A
n
199
184
A
n
200
185
A
n
201
186
A
n
202
187
A
n
203
188
A
GLY
-14
n
1
GLY
-14
B
SER
-13
n
2
SER
-13
B
VAL
-12
n
3
VAL
-12
B
VAL
-11
n
4
VAL
-11
B
ILE
-10
n
5
ILE
-10
B
VAL
-9
n
6
VAL
-9
B
GLY
-8
n
7
GLY
-8
B
ARG
-7
n
8
ARG
-7
B
ILE
-6
n
9
ILE
-6
B
ILE
-5
n
10
ILE
-5
B
LEU
-4
n
11
LEU
-4
B
SER
-3
n
12
SER
-3
B
n
13
-2
B
n
14
-1
B
n
15
0
B
GLY
1
n
16
GLY
1
B
PRO
2
n
17
PRO
2
B
ILE
3
n
18
ILE
3
B
THR
4
n
19
THR
4
B
ALA
5
n
20
ALA
5
B
TYR
6
n
21
TYR
6
B
SER
7
n
22
SER
7
B
GLN
8
n
23
GLN
8
B
GLN
9
n
24
GLN
9
B
THR
10
n
25
THR
10
B
ARG
11
n
26
ARG
11
B
GLY
12
n
27
GLY
12
B
LEU
13
n
28
LEU
13
B
LEU
14
n
29
LEU
14
B
GLY
15
n
30
GLY
15
B
CYS
16
n
31
CYS
16
B
ILE
17
n
32
ILE
17
B
ILE
18
n
33
ILE
18
B
THR
19
n
34
THR
19
B
SER
20
n
35
SER
20
B
LEU
21
n
36
LEU
21
B
THR
22
n
37
THR
22
B
GLY
23
n
38
GLY
23
B
ARG
24
n
39
ARG
24
B
ASP
25
n
40
ASP
25
B
ARG
26
n
41
ARG
26
B
ASN
27
n
42
ASN
27
B
GLN
28
n
43
GLN
28
B
VAL
29
n
44
VAL
29
B
GLU
30
n
45
GLU
30
B
GLY
31
n
46
GLY
31
B
GLU
32
n
47
GLU
32
B
VAL
33
n
48
VAL
33
B
GLN
34
n
49
GLN
34
B
VAL
35
n
50
VAL
35
B
VAL
36
n
51
VAL
36
B
SER
37
n
52
SER
37
B
THR
38
n
53
THR
38
B
ALA
39
n
54
ALA
39
B
THR
40
n
55
THR
40
B
GLN
41
n
56
GLN
41
B
SER
42
n
57
SER
42
B
PHE
43
n
58
PHE
43
B
LEU
44
n
59
LEU
44
B
ALA
45
n
60
ALA
45
B
THR
46
n
61
THR
46
B
CYS
47
n
62
CYS
47
B
VAL
48
n
63
VAL
48
B
ASN
49
n
64
ASN
49
B
GLY
50
n
65
GLY
50
B
VAL
51
n
66
VAL
51
B
CYS
52
n
67
CYS
52
B
TRP
53
n
68
TRP
53
B
THR
54
n
69
THR
54
B
VAL
55
n
70
VAL
55
B
TYR
56
n
71
TYR
56
B
HIS
57
n
72
HIS
57
B
GLY
58
n
73
GLY
58
B
ALA
59
n
74
ALA
59
B
GLY
60
n
75
GLY
60
B
SER
61
n
76
SER
61
B
LYS
62
n
77
LYS
62
B
THR
63
n
78
THR
63
B
LEU
64
n
79
LEU
64
B
ALA
65
n
80
ALA
65
B
GLY
66
n
81
GLY
66
B
PRO
67
n
82
PRO
67
B
LYS
68
n
83
LYS
68
B
GLY
69
n
84
GLY
69
B
PRO
70
n
85
PRO
70
B
ILE
71
n
86
ILE
71
B
THR
72
n
87
THR
72
B
GLN
73
n
88
GLN
73
B
MET
74
n
89
MET
74
B
TYR
75
n
90
TYR
75
B
THR
76
n
91
THR
76
B
ASN
77
n
92
ASN
77
B
VAL
78
n
93
VAL
78
B
ASP
79
n
94
ASP
79
B
GLN
80
n
95
GLN
80
B
ASP
81
n
96
ASP
81
B
LEU
82
n
97
LEU
82
B
VAL
83
n
98
VAL
83
B
GLY
84
n
99
GLY
84
B
TRP
85
n
100
TRP
85
B
GLN
86
n
101
GLN
86
B
ALA
87
n
102
ALA
87
B
PRO
88
n
103
PRO
88
B
PRO
89
n
104
PRO
89
B
GLY
90
n
105
GLY
90
B
ALA
91
n
106
ALA
91
B
ARG
92
n
107
ARG
92
B
SER
93
n
108
SER
93
B
LEU
94
n
109
LEU
94
B
THR
95
n
110
THR
95
B
PRO
96
n
111
PRO
96
B
CYS
97
n
112
CYS
97
B
n
113
98
B
n
114
99
B
n
115
100
B
n
116
101
B
SER
102
n
117
SER
102
B
ASP
103
n
118
ASP
103
B
LEU
104
n
119
LEU
104
B
TYR
105
n
120
TYR
105
B
LEU
106
n
121
LEU
106
B
VAL
107
n
122
VAL
107
B
THR
108
n
123
THR
108
B
ARG
109
n
124
ARG
109
B
HIS
110
n
125
HIS
110
B
ALA
111
n
126
ALA
111
B
ASP
112
n
127
ASP
112
B
VAL
113
n
128
VAL
113
B
ILE
114
n
129
ILE
114
B
PRO
115
n
130
PRO
115
B
VAL
116
n
131
VAL
116
B
ARG
117
n
132
ARG
117
B
ARG
118
n
133
ARG
118
B
ARG
119
n
134
ARG
119
B
GLY
120
n
135
GLY
120
B
ASP
121
n
136
ASP
121
B
SER
122
n
137
SER
122
B
ARG
123
n
138
ARG
123
B
GLY
124
n
139
GLY
124
B
SER
125
n
140
SER
125
B
LEU
126
n
141
LEU
126
B
LEU
127
n
142
LEU
127
B
SER
128
n
143
SER
128
B
PRO
129
n
144
PRO
129
B
ARG
130
n
145
ARG
130
B
PRO
131
n
146
PRO
131
B
VAL
132
n
147
VAL
132
B
SER
133
n
148
SER
133
B
TYR
134
n
149
TYR
134
B
LEU
135
n
150
LEU
135
B
LYS
136
n
151
LYS
136
B
GLY
137
n
152
GLY
137
B
SER
138
n
153
SER
138
B
SER
139
n
154
SER
139
B
GLY
140
n
155
GLY
140
B
GLY
141
n
156
GLY
141
B
PRO
142
n
157
PRO
142
B
LEU
143
n
158
LEU
143
B
LEU
144
n
159
LEU
144
B
CYS
145
n
160
CYS
145
B
PRO
146
n
161
PRO
146
B
SER
147
n
162
SER
147
B
GLY
148
n
163
GLY
148
B
HIS
149
n
164
HIS
149
B
ALA
150
n
165
ALA
150
B
VAL
151
n
166
VAL
151
B
GLY
152
n
167
GLY
152
B
ILE
153
n
168
ILE
153
B
PHE
154
n
169
PHE
154
B
ARG
155
n
170
ARG
155
B
ALA
156
n
171
ALA
156
B
ALA
157
n
172
ALA
157
B
VAL
158
n
173
VAL
158
B
CYS
159
n
174
CYS
159
B
THR
160
n
175
THR
160
B
ARG
161
n
176
ARG
161
B
GLY
162
n
177
GLY
162
B
VAL
163
n
178
VAL
163
B
ALA
164
n
179
ALA
164
B
LYS
165
n
180
LYS
165
B
ALA
166
n
181
ALA
166
B
VAL
167
n
182
VAL
167
B
ASP
168
n
183
ASP
168
B
PHE
169
n
184
PHE
169
B
VAL
170
n
185
VAL
170
B
PRO
171
n
186
PRO
171
B
VAL
172
n
187
VAL
172
B
GLU
173
n
188
GLU
173
B
SER
174
n
189
SER
174
B
MET
175
n
190
MET
175
B
GLU
176
n
191
GLU
176
B
THR
177
n
192
THR
177
B
THR
178
n
193
THR
178
B
MET
179
n
194
MET
179
B
ARG
180
n
195
ARG
180
B
n
196
181
B
n
197
182
B
n
198
183
B
n
199
184
B
n
200
185
B
n
201
186
B
n
202
187
B
n
203
188
B
n
1
1
C
n
2
2
C
n
3
3
C
ASP
4
n
4
ASP
4
C
GLU
5
n
5
GLU
5
C
LEU
6
n
6
LEU
6
C
VAL
7
n
7
VAL
7
C
TYR
8
n
8
TYR
8
C
LEU
9
n
9
LEU
9
C
LEU
10
n
10
LEU
10
C
ASP
11
n
11
ASP
11
C
GLY
12
n
12
GLY
12
C
PRO
13
n
13
PRO
13
C
GLY
14
n
14
GLY
14
C
TYR
15
n
15
TYR
15
C
ASP
16
n
16
ASP
16
C
PRO
17
n
17
PRO
17
C
ILE
18
n
18
ILE
18
C
HIS
19
n
19
HIS
19
C
n
20
20
C
n
1
1
D
n
2
2
D
n
3
3
D
ASP
4
n
4
ASP
4
D
GLU
5
n
5
GLU
5
D
LEU
6
n
6
LEU
6
D
VAL
7
n
7
VAL
7
D
TYR
8
n
8
TYR
8
D
LEU
9
n
9
LEU
9
D
LEU
10
n
10
LEU
10
D
ASP
11
n
11
ASP
11
D
GLY
12
n
12
GLY
12
D
PRO
13
n
13
PRO
13
D
GLY
14
n
14
GLY
14
D
TYR
15
n
15
TYR
15
D
ASP
16
n
16
ASP
16
D
PRO
17
n
17
PRO
17
D
ILE
18
n
18
ILE
18
D
HIS
19
n
19
HIS
19
D
SER
20
n
20
SER
20
D
author_and_software_defined_assembly
PISA
2
dimeric
author_and_software_defined_assembly
PISA
2
dimeric
2140
-28.2
9120
2110
-21.7
9130
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
GLN
8
A
N
GLN
23
A
O
ARG
-7
A
O
ARG
8
A
N
ILE
-6
A
N
ILE
9
A
O
VAL
33
A
O
VAL
48
A
N
VAL
36
A
N
VAL
51
A
O
PHE
43
A
O
PHE
58
A
N
VAL
48
A
N
VAL
63
A
O
VAL
51
A
O
VAL
66
A
N
THR
54
A
N
THR
69
A
O
VAL
83
A
O
VAL
98
A
N
GLY
84
A
N
GLY
99
A
O
TYR
75
A
O
TYR
90
A
N
LEU
106
A
N
LEU
121
A
O
ILE
114
A
O
ILE
129
A
N
ARG
117
A
N
ARG
132
A
O
SER
125
A
O
SER
140
A
N
ARG
130
A
N
ARG
145
A
O
ALA
164
A
O
ALA
179
A
N
VAL
170
A
N
VAL
185
A
O
ILE
153
A
O
ILE
168
A
N
VAL
151
A
N
VAL
166
A
O
LEU
143
A
O
LEU
158
B
N
GLN
8
B
N
GLN
23
B
O
ARG
-7
B
O
ARG
8
B
N
ILE
-6
B
N
ILE
9
B
O
VAL
33
B
O
VAL
48
B
N
VAL
36
B
N
VAL
51
B
O
PHE
43
B
O
PHE
58
B
N
VAL
48
B
N
VAL
63
B
O
VAL
51
B
O
VAL
66
B
N
THR
54
B
N
THR
69
B
O
VAL
83
B
O
VAL
98
B
N
GLY
84
B
N
GLY
99
B
O
TYR
75
B
O
TYR
90
B
N
LEU
106
B
N
LEU
121
B
O
ILE
114
B
O
ILE
129
B
N
ARG
117
B
N
ARG
132
B
O
SER
125
B
O
SER
140
B
N
ARG
130
B
N
ARG
145
B
O
ALA
164
B
O
ALA
179
B
N
VAL
170
B
N
VAL
185
B
O
ILE
153
B
O
ILE
168
B
N
VAL
151
B
N
VAL
166
B
O
LEU
143
B
O
LEU
158
1
B
CG
ARG
180
B
CG
ARG
195
1
Y
1
B
CD
ARG
180
B
CD
ARG
195
1
Y
1
B
NE
ARG
180
B
NE
ARG
195
1
Y
1
B
CZ
ARG
180
B
CZ
ARG
195
1
Y
1
B
NH1
ARG
180
B
NH1
ARG
195
1
Y
1
B
NH2
ARG
180
B
NH2
ARG
195
1
Y
1
A
GLY
-2
A
GLY
13
1
Y
1
A
LYS
-1
A
LYS
14
1
Y
1
A
GLY
0
A
GLY
15
1
Y
1
A
GLY
1
A
GLY
16
1
Y
1
A
ARG
180
A
ARG
195
1
Y
1
A
GLY
181
A
GLY
196
1
Y
1
A
SER
182
A
SER
197
1
Y
1
A
HIS
183
A
HIS
198
1
Y
1
A
HIS
184
A
HIS
199
1
Y
1
A
HIS
185
A
HIS
200
1
Y
1
A
HIS
186
A
HIS
201
1
Y
1
A
HIS
187
A
HIS
202
1
Y
1
A
HIS
188
A
HIS
203
1
Y
1
B
GLY
-2
B
GLY
13
1
Y
1
B
LYS
-1
B
LYS
14
1
Y
1
B
GLY
0
B
GLY
15
1
Y
1
B
THR
98
B
THR
113
1
Y
1
B
CYS
99
B
CYS
114
1
Y
1
B
GLY
100
B
GLY
115
1
Y
1
B
SER
101
B
SER
116
1
Y
1
B
GLY
181
B
GLY
196
1
Y
1
B
SER
182
B
SER
197
1
Y
1
B
HIS
183
B
HIS
198
1
Y
1
B
HIS
184
B
HIS
199
1
Y
1
B
HIS
185
B
HIS
200
1
Y
1
B
HIS
186
B
HIS
201
1
Y
1
B
HIS
187
B
HIS
202
1
Y
1
B
HIS
188
B
HIS
203
1
Y
1
C
GLY
1
C
GLY
1
1
Y
1
C
GLU
2
C
GLU
2
1
Y
1
C
LEU
3
C
LEU
3
1
Y
1
C
SER
20
C
SER
20
1
Y
1
D
GLY
1
D
GLY
1
1
Y
1
D
GLU
2
D
GLU
2
1
Y
1
D
LEU
3
D
LEU
3
1
Y
1
B
B
O
O
HOH
HOH
2011
2012
2.11
1_555
6_555
1
A
PHE
43
-171.91
-165.84
1
B
PHE
43
-172.49
-171.09
1
B
ARG
155
-121.22
-50.35
33.544
-0.33
-0.17
0.00
-0.33
0.00
0.50
0.952
0.925
HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT. U VALUES REFINED INDIVIDUALLY.
0.23899
0.18498
0.18773
2.20
80.47
1034
19595
5.0
99.63
5.559
0.144
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.280
0.215
0.80
0.80
1.20
PDB ENTRY 1DXP
MAXIMUM LIKELIHOOD
BABINET MODEL WITH MASK
2.20
80.47
80
3120
4
0
3036
0.009
0.019
3141
1.360
1.974
4286
6.578
5.000
417
27.287
22.364
110
14.038
15.000
483
14.051
15.000
26
0.085
0.200
504
0.006
0.021
2360
0.279
0.236
2.257
76
1395
20
98.92
2.20
80.50
4A1V
20629
2.7
0.10
1
12.70
4.4
99.7
0.59
2.20
2.30
2.70
1
4.4
99.4
refinement
REFMAC
5.6.0117
data reduction
XDS
data scaling
XSCALE
phasing
PHASER
Co-Complex structure of NS3-4A protease with the optimized inhibitory peptide CP5-46A-4D5E
1
N
N
1
N
N
2
N
N
2
N
N
3
N
N
4
N
N
3
N
N
3
N
N
5
N
N
5
N
N
5
N
N
5
N
N
A
GLY
12
A
GLY
27
HELX_P
A
GLY
23
A
GLY
38
1
1
12
A
TYR
56
A
TYR
71
HELX_P
A
GLY
60
A
GLY
75
1
2
5
A
SER
133
A
SER
148
HELX_P
A
LYS
136
A
LYS
151
5
3
4
A
VAL
172
A
VAL
187
HELX_P
A
MET
179
A
MET
194
1
4
8
B
GLY
12
B
GLY
27
HELX_P
B
GLY
23
B
GLY
38
1
5
12
B
TYR
56
B
TYR
71
HELX_P
B
GLY
60
B
GLY
75
1
6
5
B
SER
133
B
SER
148
HELX_P
B
LYS
136
B
LYS
151
5
7
4
B
VAL
172
B
VAL
187
HELX_P
B
MET
179
B
MET
194
1
8
8
HYDROLASE/PEPTIDE
HYDROLASE-PEPTIDE COMPLEX
POLG_HCVJA
UNP
1
P26662
4A1V
PDB
2
4A1V
1678
1690
4A1V
-14
-2
P26662
A
1
1
13
1028
1206
4A1V
2
180
P26662
A
1
17
195
1678
1690
4A1V
-14
-2
P26662
B
1
1
13
1028
1206
4A1V
2
180
P26662
B
1
17
195
1
20
4A1V
1
20
4A1V
C
2
1
20
1
20
4A1V
1
20
4A1V
D
2
1
20
1
linker
LYS
-1
4A1V
A
P26662
UNP
14
1
linker
GLY
0
4A1V
A
P26662
UNP
15
1
linker
GLY
1
4A1V
A
P26662
UNP
16
1
expression tag
GLY
181
4A1V
A
P26662
UNP
196
1
expression tag
SER
182
4A1V
A
P26662
UNP
197
1
expression tag
HIS
183
4A1V
A
P26662
UNP
198
1
expression tag
HIS
184
4A1V
A
P26662
UNP
199
1
expression tag
HIS
185
4A1V
A
P26662
UNP
200
1
expression tag
HIS
186
4A1V
A
P26662
UNP
201
1
expression tag
HIS
187
4A1V
A
P26662
UNP
202
1
expression tag
HIS
188
4A1V
A
P26662
UNP
203
1
LYS
SEE REMARK 999
ARG
26
4A1V
A
P26662
UNP
1052
41
1
ASP
SEE REMARK 999
GLU
30
4A1V
A
P26662
UNP
1056
45
1
LEU
SEE REMARK 999
VAL
36
4A1V
A
P26662
UNP
1062
51
1
PRO
SEE REMARK 999
GLN
86
4A1V
A
P26662
UNP
1112
101
1
MET
SEE REMARK 999
LEU
94
4A1V
A
P26662
UNP
1120
109
1
VAL
variant
ILE
114
4A1V
A
P26662
UNP
1140
129
1
ILE
variant
VAL
132
4A1V
A
P26662
UNP
1158
147
1
VAL
SEE REMARK 999
ALA
150
4A1V
A
P26662
UNP
1176
165
1
ILE
SEE REMARK 999
VAL
170
4A1V
A
P26662
UNP
1196
185
3
linker
LYS
-1
4A1V
B
P26662
UNP
14
3
linker
GLY
0
4A1V
B
P26662
UNP
15
3
linker
GLY
1
4A1V
B
P26662
UNP
16
3
expression tag
GLY
181
4A1V
B
P26662
UNP
196
3
expression tag
SER
182
4A1V
B
P26662
UNP
197
3
expression tag
HIS
183
4A1V
B
P26662
UNP
198
3
expression tag
HIS
184
4A1V
B
P26662
UNP
199
3
expression tag
HIS
185
4A1V
B
P26662
UNP
200
3
expression tag
HIS
186
4A1V
B
P26662
UNP
201
3
expression tag
HIS
187
4A1V
B
P26662
UNP
202
3
expression tag
HIS
188
4A1V
B
P26662
UNP
203
3
LYS
SEE REMARK 999
ARG
26
4A1V
B
P26662
UNP
1052
41
3
ASP
SEE REMARK 999
GLU
30
4A1V
B
P26662
UNP
1056
45
3
LEU
SEE REMARK 999
VAL
36
4A1V
B
P26662
UNP
1062
51
3
PRO
SEE REMARK 999
GLN
86
4A1V
B
P26662
UNP
1112
101
3
MET
SEE REMARK 999
LEU
94
4A1V
B
P26662
UNP
1120
109
3
VAL
variant
ILE
114
4A1V
B
P26662
UNP
1140
129
3
ILE
variant
VAL
132
4A1V
B
P26662
UNP
1158
147
3
VAL
SEE REMARK 999
ALA
150
4A1V
B
P26662
UNP
1176
165
3
ILE
SEE REMARK 999
VAL
170
4A1V
B
P26662
UNP
1196
185
7
7
7
7
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
A
ALA
5
A
ALA
20
A
GLN
9
A
GLN
24
A
VAL
-11
A
VAL
4
A
LEU
-4
A
LEU
11
A
VAL
33
A
VAL
48
A
SER
37
A
SER
52
A
SER
42
A
SER
57
A
VAL
48
A
VAL
63
A
VAL
51
A
VAL
66
A
VAL
55
A
VAL
70
A
LEU
82
A
LEU
97
A
GLN
86
A
GLN
101
A
TYR
75
A
TYR
90
A
ASN
77
A
ASN
92
A
ASP
103
A
ASP
118
A
VAL
107
A
VAL
122
A
VAL
113
A
VAL
128
A
ARG
118
A
ARG
133
A
ARG
123
A
ARG
138
A
PRO
131
A
PRO
146
A
VAL
163
A
VAL
178
A
PRO
171
A
PRO
186
A
ALA
150
A
ALA
165
A
THR
160
A
THR
175
A
PRO
142
A
PRO
157
A
LEU
144
A
LEU
159
A
ASP
103
A
ASP
118
A
VAL
107
A
VAL
122
B
ALA
5
B
ALA
20
B
GLN
9
B
GLN
24
B
VAL
-11
B
VAL
4
B
LEU
-4
B
LEU
11
B
VAL
33
B
VAL
48
B
SER
37
B
SER
52
B
SER
42
B
SER
57
B
VAL
48
B
VAL
63
B
VAL
51
B
VAL
66
B
VAL
55
B
VAL
70
B
LEU
82
B
LEU
97
B
GLN
86
B
GLN
101
B
TYR
75
B
TYR
90
B
ASN
77
B
ASN
92
B
ASP
103
B
ASP
118
B
VAL
107
B
VAL
122
B
VAL
113
B
VAL
128
B
ARG
118
B
ARG
133
B
ARG
123
B
ARG
138
B
PRO
131
B
PRO
146
B
VAL
163
B
VAL
178
B
PRO
171
B
PRO
186
B
ALA
150
B
ALA
165
B
THR
160
B
THR
175
B
PRO
142
B
PRO
157
B
LEU
144
B
LEU
159
B
ASP
103
B
ASP
118
B
VAL
107
B
VAL
122
BINDING SITE FOR RESIDUE CL A 1180
A
CL
1180
Software
4
BINDING SITE FOR RESIDUE K A 1181
A
K
1181
Software
2
BINDING SITE FOR RESIDUE CL B 1181
B
CL
1181
Software
4
BINDING SITE FOR RESIDUE CL B 1182
B
CL
1182
Software
5
A
ARG
11
A
ARG
26
4
1_555
A
GLY
12
A
GLY
27
4
1_555
A
GLY
15
A
GLY
30
4
1_555
A
PRO
70
A
PRO
85
4
5_554
A
SER
61
A
SER
76
2
1_555
A
HOH
2024
I
HOH
2
1_555
B
GLY
-14
B
GLY
1
4
1_555
B
GLN
9
B
GLN
24
4
5_554
B
GLY
12
B
GLY
27
4
5_554
B
LEU
13
B
LEU
28
4
5_554
B
ARG
11
B
ARG
26
5
1_555
B
GLY
12
B
GLY
27
5
1_555
B
GLY
15
B
GLY
30
5
1_555
B
PRO
70
B
PRO
85
5
6_555
B
HOH
2012
J
HOH
5
6_555
169
P 61