0.004455
0.002572
0.000000
0.000000
0.005144
0.000000
0.000000
0.000000
0.013195
0.00000
0.00000
0.00000
Venkatraman, S.
Wu, W.
Prongay, A.J.
Girijavallabhan, V.
Njoroge, F.G.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
36
90.00
90.00
120.00
224.483
224.483
75.786
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C29 H54 B N5 O7 S
627.644
[(1R)-2-cyclobutyl-1-({[(1R,2S,5S)-3-(N-{[(1S)-2,2-dimethyl-1-{[methyl(methylsulfonyl)amino]methyl}propyl]carbamoyl}-3-methyl-L-valyl)-6,6-dimethyl-3-azabicyclo[3.1.0]hex-2-yl]carbonyl}amino)ethyl]boronic acid
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
C
N
75
N
C
N
76
N
C
N
77
N
C
N
78
N
C
N
79
N
C
N
80
N
O
N
81
S
C
N
82
N
C
N
83
N
C
N
84
N
N
N
85
N
N
N
86
N
S
N
87
N
O
N
88
N
O
N
89
N
N
N
90
S
C
N
91
N
C
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
C
N
96
N
O
N
97
N
N
N
98
N
C
N
99
S
C
N
100
R
C
N
101
S
C
N
102
N
C
N
103
N
C
N
104
N
C
N
105
N
C
N
106
N
O
N
107
N
N
N
108
R
C
N
109
N
B
N
110
N
C
N
111
N
C
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
N
N
172
R
C
N
173
N
C
N
174
N
O
N
175
N
C
N
176
N
S
N
177
N
O
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
N
N
186
S
C
N
187
N
C
N
188
N
O
N
189
N
C
N
190
N
C
N
191
N
C
N
192
N
O
N
193
N
N
N
194
N
O
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
O
N
213
N
O
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
N
N
225
N
C
N
226
N
C
N
227
N
O
N
228
N
O
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
N
N
235
S
C
N
236
N
C
N
237
N
O
N
238
N
C
Y
239
N
C
Y
240
N
N
Y
241
N
C
Y
242
N
C
Y
243
N
N
N
244
N
O
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
O
N
256
N
H
N
257
N
H
N
258
N
N
N
259
S
C
N
260
N
C
N
261
N
O
N
262
S
C
N
263
N
C
N
264
N
C
N
265
N
C
N
266
N
O
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
N
N
281
S
C
N
282
N
C
N
283
N
O
N
284
N
C
N
285
N
C
N
286
N
C
N
287
N
C
N
288
N
O
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
N
N
303
S
C
N
304
N
C
N
305
N
O
N
306
N
C
N
307
N
C
N
308
N
C
N
309
N
C
N
310
N
N
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
N
N
328
S
C
N
329
N
C
N
330
N
O
N
331
N
C
N
332
N
C
N
333
N
S
N
334
N
C
N
335
N
O
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
N
N
348
S
C
N
349
N
C
N
350
N
O
N
351
N
C
Y
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
N
358
N
O
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
N
N
371
S
C
N
372
N
C
N
373
N
O
N
374
N
C
N
375
N
C
N
376
N
C
N
377
N
O
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
N
N
388
S
C
N
389
N
C
N
390
N
O
N
391
N
C
N
392
N
O
N
393
N
O
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
N
N
402
S
C
N
403
N
C
N
404
N
O
N
405
R
C
N
406
N
O
N
407
N
C
N
408
N
O
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
N
N
419
S
C
N
420
N
C
N
421
N
O
N
422
N
C
Y
423
N
C
Y
424
N
C
Y
425
N
C
Y
426
N
N
Y
427
N
C
Y
428
N
C
Y
429
N
C
Y
430
N
C
Y
431
N
C
N
432
N
O
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
N
N
446
S
C
N
447
N
C
N
448
N
O
N
449
N
C
Y
450
N
C
Y
451
N
C
Y
452
N
C
Y
453
N
C
Y
454
N
C
Y
455
N
C
N
456
N
O
N
457
N
O
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
N
N
470
S
C
N
471
N
C
N
472
N
O
N
473
N
C
N
474
N
C
N
475
N
C
N
476
N
O
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
H
N
487
N
H
N
488
N
ZN
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
doub
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
doub
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
doub
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
doub
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
doub
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
doub
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
doub
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
doub
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
doub
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
doub
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
doub
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
Y
239
N
sing
Y
240
N
doub
Y
241
N
doub
N
242
N
sing
Y
243
N
sing
N
244
N
sing
Y
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
doub
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
doub
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
doub
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
doub
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
doub
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
Y
347
N
doub
Y
348
N
sing
Y
349
N
sing
N
350
N
sing
Y
351
N
doub
N
352
N
sing
Y
353
N
doub
N
354
N
sing
Y
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
doub
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
doub
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
doub
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
doub
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
Y
416
N
doub
Y
417
N
sing
Y
418
N
sing
N
419
N
sing
Y
420
N
doub
Y
421
N
sing
Y
422
N
sing
N
423
N
sing
Y
424
N
sing
Y
425
N
doub
N
426
N
sing
Y
427
N
doub
N
428
N
sing
Y
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
doub
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
Y
444
N
doub
Y
445
N
sing
Y
446
N
sing
N
447
N
sing
Y
448
N
doub
N
449
N
sing
Y
450
N
doub
N
451
N
sing
Y
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
doub
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
UK
Bioorg.Med.Chem.Lett.
BMCLE8
1127
0960-894X
19
180
183
10.1016/j.bmcl.2008.10.124
19022670
Potent inhibitors of HCV-NS3 protease derived from boronic acids.
2009
10.2210/pdb3eyd/pdb
pdb_00003eyd
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2004-04-07
ADSC QUANTUM 210
SINGLE WAVELENGTH
M
x-ray
1
1.000
1.0
17-ID
APS
1.000
SYNCHROTRON
APS BEAMLINE 17-ID
21233.225
HCV NS3
Protease domain, UNP residues 1027-1207
2
man
polymer
2394.039
HCV NS4a peptide
UNP residues 1678-1696
C22S
2
syn
polymer
65.409
ZINC ION
2
syn
non-polymer
627.644
[(1R)-2-cyclobutyl-1-({[(1R,2S,5S)-3-(N-{[(1S)-2,2-dimethyl-1-{[methyl(methylsulfonyl)amino]methyl}propyl]carbamoyl}-3-methyl-L-valyl)-6,6-dimethyl-3-azabicyclo[3.1.0]hex-2-yl]carbonyl}amino)ethyl]boronic acid
1
syn
non-polymer
18.015
water
257
nat
water
no
no
MASMTGGQQMGAPITAYAQQTRGLLGCIITSLTGRDKNQVEGEVQIVSTATQTFLATCINGVCWTVYHGAGTRTIASPKG
PVIQMYTNVDQDLVGWPAPQGSRSLTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLLSPRPISYLKGSSGGPLLCPAGH
AVGLFRAAVCTRGVAKAVDFIPVENLETTMRSGSHHHHHH
MASMTGGQQMGAPITAYAQQTRGLLGCIITSLTGRDKNQVEGEVQIVSTATQTFLATCINGVCWTVYHGAGTRTIASPKG
PVIQMYTNVDQDLVGWPAPQGSRSLTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLLSPRPISYLKGSSGGPLLCPAGH
AVGLFRAAVCTRGVAKAVDFIPVENLETTMRSGSHHHHHH
A,C
polypeptide(L)
no
no
KKGSVVIVGRIVLSGKPAIIPKK
KKGSVVIVGRIVLSGKPAIIPKK
B,D
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
T7 epitope (MASMTGGQQMG) followed by HCV NS3 residues 1-181 the SGHHHHHH
H77 Strain of genotype 1a
sample
ns3
31646
Hepatitis C virus subtype 1a
562
Escherichia coli
bl21(de3)
Plasmid
pET-3a (Novagen)
1
3.89
68.37
VAPOR DIFFUSION, HANGING DROP
5.6
Crystallization was performed by the vapor diffusion method using hanging drops (4 L protein solution mixed with 4 L (0.75 - 1.00) M NaCl - 0.1 M MES - 0.1 M Na/K PO4, pH 5.6 - 6.2) suspended over 1 mL reservoir solutions of (1.25 - 1.50) M NaCl - 0.1 M MES - 0.1 M Na/K PO4 - 5 mM -mercaptoethanol, pH 5.6-6.2. The trays were set at 4oC for 5-7 days to control nucleation, followed by incubation for 3 weeks at 12oC to maximize crystal growth., VAPOR DIFFUSION, HANGING DROP, temperature 277, then 285K
277, then 285
database_2
struct_conn
struct_conn_type
struct_ref_seq_dif
struct_site
chem_comp_atom
chem_comp_bond
repository
Initial release
Version format compliance
Database references
Derived calculations
Data collection
1
0
2009-02-10
1
1
2011-07-13
1
2
2021-10-20
1
3
2023-12-27
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.conn_type_id
_struct_conn.id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn_type.id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2008-10-20
REL
REL
ZN
ZINC ION
BE8
[(1R)-2-cyclobutyl-1-({[(1R,2S,5S)-3-(N-{[(1S)-2,2-dimethyl-1-{[methyl(methylsulfonyl)amino]methyl}propyl]carbamoyl}-3-methyl-L-valyl)-6,6-dimethyl-3-azabicyclo[3.1.0]hex-2-yl]carbonyl}amino)ethyl]boronic acid
HOH
water
Peptides were synthesized using Fmoc solid-phase chemistry on an ABI 431 synthesizer (Foster City, CA). Preloaded 2-chlorotrityl chloride resin or Wang resin was used for the solid phase assembly of NS4A activator peptide. The sequence of the peptide was Lys-Lys-Gly-Ser-Val-Val-Ile-Val-Gly-Arg-Ile-Ile-Leu-Ser-Gly-Arg-Pro-Ala-Ile-Val-Pro-Lys-Lys-OH. Trifunctional residue sidechain protecting groups included tert-butyl for Ser, tert-butoxycarbonyl for Lys, and 2,2,4,6,7-pentamethyldihydrobenzofuran-5-sulfonyl for Arg. Cleavage and sidechain deprotection was accomplished using 92.5% trifluoroacetic acid, with 2.5% each of water, ethanedithiol and triisopropylsilane for 2 hours. The peptide was purified by reversed phase HPLC. The peptide molecular weight was confirmed by electrospray ionization mass spectrometry.
sample
ZN
901
3
ZN
ZN
901
A
BE8
401
4
BE8
BE8
401
A
ZN
901
3
ZN
ZN
901
C
HOH
190
5
HOH
HOH
190
A
HOH
4
5
HOH
HOH
191
A
HOH
192
5
HOH
HOH
192
A
HOH
6
5
HOH
HOH
193
A
HOH
194
5
HOH
HOH
194
A
HOH
195
5
HOH
HOH
195
A
HOH
196
5
HOH
HOH
196
A
HOH
7
5
HOH
HOH
197
A
HOH
198
5
HOH
HOH
198
A
HOH
10
5
HOH
HOH
199
A
HOH
12
5
HOH
HOH
200
A
HOH
13
5
HOH
HOH
201
A
HOH
14
5
HOH
HOH
202
A
HOH
203
5
HOH
HOH
203
A
HOH
204
5
HOH
HOH
204
A
HOH
205
5
HOH
HOH
205
A
HOH
206
5
HOH
HOH
206
A
HOH
15
5
HOH
HOH
207
A
HOH
208
5
HOH
HOH
208
A
HOH
16
5
HOH
HOH
209
A
HOH
210
5
HOH
HOH
210
A
HOH
21
5
HOH
HOH
211
A
HOH
212
5
HOH
HOH
212
A
HOH
22
5
HOH
HOH
213
A
HOH
214
5
HOH
HOH
214
A
HOH
215
5
HOH
HOH
215
A
HOH
216
5
HOH
HOH
216
A
HOH
23
5
HOH
HOH
217
A
HOH
24
5
HOH
HOH
218
A
HOH
25
5
HOH
HOH
219
A
HOH
28
5
HOH
HOH
220
A
HOH
29
5
HOH
HOH
221
A
HOH
222
5
HOH
HOH
222
A
HOH
30
5
HOH
HOH
223
A
HOH
224
5
HOH
HOH
224
A
HOH
225
5
HOH
HOH
225
A
HOH
34
5
HOH
HOH
226
A
HOH
36
5
HOH
HOH
227
A
HOH
228
5
HOH
HOH
228
A
HOH
38
5
HOH
HOH
229
A
HOH
39
5
HOH
HOH
230
A
HOH
231
5
HOH
HOH
231
A
HOH
232
5
HOH
HOH
232
A
HOH
40
5
HOH
HOH
233
A
HOH
41
5
HOH
HOH
234
A
HOH
42
5
HOH
HOH
235
A
HOH
43
5
HOH
HOH
236
A
HOH
237
5
HOH
HOH
237
A
HOH
238
5
HOH
HOH
238
A
HOH
50
5
HOH
HOH
239
A
HOH
240
5
HOH
HOH
240
A
HOH
57
5
HOH
HOH
241
A
HOH
59
5
HOH
HOH
242
A
HOH
243
5
HOH
HOH
243
A
HOH
61
5
HOH
HOH
244
A
HOH
245
5
HOH
HOH
245
A
HOH
246
5
HOH
HOH
246
A
HOH
63
5
HOH
HOH
247
A
HOH
66
5
HOH
HOH
248
A
HOH
249
5
HOH
HOH
249
A
HOH
250
5
HOH
HOH
250
A
HOH
69
5
HOH
HOH
251
A
HOH
70
5
HOH
HOH
252
A
HOH
71
5
HOH
HOH
253
A
HOH
254
5
HOH
HOH
254
A
HOH
255
5
HOH
HOH
255
A
HOH
256
5
HOH
HOH
256
A
HOH
72
5
HOH
HOH
257
A
HOH
74
5
HOH
HOH
258
A
HOH
77
5
HOH
HOH
259
A
HOH
81
5
HOH
HOH
260
A
HOH
82
5
HOH
HOH
261
A
HOH
83
5
HOH
HOH
262
A
HOH
84
5
HOH
HOH
263
A
HOH
85
5
HOH
HOH
264
A
HOH
86
5
HOH
HOH
265
A
HOH
87
5
HOH
HOH
266
A
HOH
88
5
HOH
HOH
267
A
HOH
90
5
HOH
HOH
268
A
HOH
91
5
HOH
HOH
269
A
HOH
93
5
HOH
HOH
270
A
HOH
95
5
HOH
HOH
271
A
HOH
96
5
HOH
HOH
272
A
HOH
100
5
HOH
HOH
273
A
HOH
102
5
HOH
HOH
274
A
HOH
103
5
HOH
HOH
275
A
HOH
104
5
HOH
HOH
276
A
HOH
105
5
HOH
HOH
277
A
HOH
106
5
HOH
HOH
278
A
HOH
107
5
HOH
HOH
279
A
HOH
109
5
HOH
HOH
280
A
HOH
112
5
HOH
HOH
281
A
HOH
114
5
HOH
HOH
282
A
HOH
115
5
HOH
HOH
283
A
HOH
119
5
HOH
HOH
284
A
HOH
121
5
HOH
HOH
285
A
HOH
122
5
HOH
HOH
286
A
HOH
124
5
HOH
HOH
287
A
HOH
125
5
HOH
HOH
288
A
HOH
126
5
HOH
HOH
289
A
HOH
127
5
HOH
HOH
290
A
HOH
131
5
HOH
HOH
291
A
HOH
134
5
HOH
HOH
292
A
HOH
135
5
HOH
HOH
293
A
HOH
136
5
HOH
HOH
294
A
HOH
137
5
HOH
HOH
295
A
HOH
138
5
HOH
HOH
296
A
HOH
144
5
HOH
HOH
297
A
HOH
147
5
HOH
HOH
298
A
HOH
148
5
HOH
HOH
299
A
HOH
149
5
HOH
HOH
300
A
HOH
150
5
HOH
HOH
301
A
HOH
152
5
HOH
HOH
302
A
HOH
154
5
HOH
HOH
303
A
HOH
156
5
HOH
HOH
304
A
HOH
157
5
HOH
HOH
305
A
HOH
159
5
HOH
HOH
306
A
HOH
161
5
HOH
HOH
307
A
HOH
163
5
HOH
HOH
308
A
HOH
164
5
HOH
HOH
309
A
HOH
167
5
HOH
HOH
310
A
HOH
172
5
HOH
HOH
311
A
HOH
173
5
HOH
HOH
312
A
HOH
175
5
HOH
HOH
313
A
HOH
177
5
HOH
HOH
314
A
HOH
178
5
HOH
HOH
315
A
HOH
180
5
HOH
HOH
316
A
HOH
181
5
HOH
HOH
317
A
HOH
182
5
HOH
HOH
318
A
HOH
184
5
HOH
HOH
319
A
HOH
187
5
HOH
HOH
320
A
HOH
188
5
HOH
HOH
321
A
HOH
189
5
HOH
HOH
322
A
HOH
49
5
HOH
HOH
323
A
HOH
54
5
HOH
HOH
324
A
HOH
236
5
HOH
HOH
325
A
HOH
3
5
HOH
HOH
3
B
HOH
17
5
HOH
HOH
17
B
HOH
18
5
HOH
HOH
18
B
HOH
53
5
HOH
HOH
53
B
HOH
55
5
HOH
HOH
55
B
HOH
97
5
HOH
HOH
97
B
HOH
128
5
HOH
HOH
128
B
HOH
139
5
HOH
HOH
139
B
HOH
179
5
HOH
HOH
179
B
HOH
218
5
HOH
HOH
218
B
HOH
229
5
HOH
HOH
229
B
HOH
234
5
HOH
HOH
234
B
HOH
1
5
HOH
HOH
190
C
HOH
191
5
HOH
HOH
191
C
HOH
2
5
HOH
HOH
192
C
HOH
193
5
HOH
HOH
193
C
HOH
5
5
HOH
HOH
194
C
HOH
8
5
HOH
HOH
195
C
HOH
11
5
HOH
HOH
196
C
HOH
197
5
HOH
HOH
197
C
HOH
19
5
HOH
HOH
198
C
HOH
26
5
HOH
HOH
199
C
HOH
200
5
HOH
HOH
200
C
HOH
201
5
HOH
HOH
201
C
HOH
202
5
HOH
HOH
202
C
HOH
27
5
HOH
HOH
203
C
HOH
31
5
HOH
HOH
204
C
HOH
32
5
HOH
HOH
205
C
HOH
35
5
HOH
HOH
206
C
HOH
207
5
HOH
HOH
207
C
HOH
37
5
HOH
HOH
208
C
HOH
209
5
HOH
HOH
209
C
HOH
44
5
HOH
HOH
210
C
HOH
211
5
HOH
HOH
211
C
HOH
45
5
HOH
HOH
212
C
HOH
46
5
HOH
HOH
213
C
HOH
47
5
HOH
HOH
214
C
HOH
48
5
HOH
HOH
215
C
HOH
51
5
HOH
HOH
216
C
HOH
217
5
HOH
HOH
217
C
HOH
52
5
HOH
HOH
218
C
HOH
219
5
HOH
HOH
219
C
HOH
220
5
HOH
HOH
220
C
HOH
56
5
HOH
HOH
221
C
HOH
58
5
HOH
HOH
222
C
HOH
60
5
HOH
HOH
223
C
HOH
67
5
HOH
HOH
224
C
HOH
68
5
HOH
HOH
225
C
HOH
226
5
HOH
HOH
226
C
HOH
227
5
HOH
HOH
227
C
HOH
73
5
HOH
HOH
228
C
HOH
75
5
HOH
HOH
229
C
HOH
230
5
HOH
HOH
230
C
HOH
76
5
HOH
HOH
231
C
HOH
78
5
HOH
HOH
232
C
HOH
233
5
HOH
HOH
233
C
HOH
79
5
HOH
HOH
234
C
HOH
235
5
HOH
HOH
235
C
HOH
89
5
HOH
HOH
236
C
HOH
94
5
HOH
HOH
237
C
HOH
98
5
HOH
HOH
238
C
HOH
239
5
HOH
HOH
239
C
HOH
99
5
HOH
HOH
240
C
HOH
241
5
HOH
HOH
241
C
HOH
242
5
HOH
HOH
242
C
HOH
101
5
HOH
HOH
243
C
HOH
244
5
HOH
HOH
244
C
HOH
108
5
HOH
HOH
245
C
HOH
110
5
HOH
HOH
246
C
HOH
247
5
HOH
HOH
247
C
HOH
248
5
HOH
HOH
248
C
HOH
111
5
HOH
HOH
249
C
HOH
113
5
HOH
HOH
250
C
HOH
251
5
HOH
HOH
251
C
HOH
252
5
HOH
HOH
252
C
HOH
253
5
HOH
HOH
253
C
HOH
116
5
HOH
HOH
254
C
HOH
117
5
HOH
HOH
255
C
HOH
118
5
HOH
HOH
256
C
HOH
257
5
HOH
HOH
257
C
HOH
120
5
HOH
HOH
258
C
HOH
123
5
HOH
HOH
259
C
HOH
129
5
HOH
HOH
260
C
HOH
130
5
HOH
HOH
261
C
HOH
132
5
HOH
HOH
262
C
HOH
133
5
HOH
HOH
263
C
HOH
141
5
HOH
HOH
264
C
HOH
142
5
HOH
HOH
265
C
HOH
143
5
HOH
HOH
266
C
HOH
145
5
HOH
HOH
267
C
HOH
146
5
HOH
HOH
268
C
HOH
151
5
HOH
HOH
269
C
HOH
153
5
HOH
HOH
270
C
HOH
155
5
HOH
HOH
271
C
HOH
158
5
HOH
HOH
272
C
HOH
160
5
HOH
HOH
273
C
HOH
162
5
HOH
HOH
274
C
HOH
165
5
HOH
HOH
275
C
HOH
166
5
HOH
HOH
276
C
HOH
168
5
HOH
HOH
277
C
HOH
169
5
HOH
HOH
278
C
HOH
170
5
HOH
HOH
279
C
HOH
171
5
HOH
HOH
280
C
HOH
174
5
HOH
HOH
281
C
HOH
176
5
HOH
HOH
282
C
HOH
183
5
HOH
HOH
283
C
HOH
185
5
HOH
HOH
284
C
HOH
223
5
HOH
HOH
285
C
HOH
9
5
HOH
HOH
9
D
HOH
20
5
HOH
HOH
42
D
HOH
33
5
HOH
HOH
43
D
HOH
62
5
HOH
HOH
62
D
HOH
64
5
HOH
HOH
64
D
HOH
65
5
HOH
HOH
65
D
HOH
80
5
HOH
HOH
80
D
HOH
92
5
HOH
HOH
92
D
HOH
140
5
HOH
HOH
140
D
HOH
186
5
HOH
HOH
186
D
HOH
199
5
HOH
HOH
199
D
HOH
213
5
HOH
HOH
213
D
HOH
221
5
HOH
HOH
221
D
n
1
-10
A
n
2
-9
A
n
3
-8
A
n
4
-7
A
n
5
-6
A
n
6
-5
A
n
7
-4
A
n
8
-3
A
n
9
-2
A
n
10
-1
A
n
11
0
A
ALA
1
n
12
ALA
1
A
PRO
2
n
13
PRO
2
A
ILE
3
n
14
ILE
3
A
THR
4
n
15
THR
4
A
ALA
5
n
16
ALA
5
A
TYR
6
n
17
TYR
6
A
ALA
7
n
18
ALA
7
A
GLN
8
n
19
GLN
8
A
GLN
9
n
20
GLN
9
A
THR
10
n
21
THR
10
A
ARG
11
n
22
ARG
11
A
GLY
12
n
23
GLY
12
A
LEU
13
n
24
LEU
13
A
LEU
14
n
25
LEU
14
A
GLY
15
n
26
GLY
15
A
CYS
16
n
27
CYS
16
A
ILE
17
n
28
ILE
17
A
ILE
18
n
29
ILE
18
A
THR
19
n
30
THR
19
A
SER
20
n
31
SER
20
A
LEU
21
n
32
LEU
21
A
THR
22
n
33
THR
22
A
GLY
23
n
34
GLY
23
A
ARG
24
n
35
ARG
24
A
ASP
25
n
36
ASP
25
A
LYS
26
n
37
LYS
26
A
ASN
27
n
38
ASN
27
A
GLN
28
n
39
GLN
28
A
VAL
29
n
40
VAL
29
A
GLU
30
n
41
GLU
30
A
GLY
31
n
42
GLY
31
A
GLU
32
n
43
GLU
32
A
VAL
33
n
44
VAL
33
A
GLN
34
n
45
GLN
34
A
ILE
35
n
46
ILE
35
A
VAL
36
n
47
VAL
36
A
SER
37
n
48
SER
37
A
THR
38
n
49
THR
38
A
ALA
39
n
50
ALA
39
A
THR
40
n
51
THR
40
A
GLN
41
n
52
GLN
41
A
THR
42
n
53
THR
42
A
PHE
43
n
54
PHE
43
A
LEU
44
n
55
LEU
44
A
ALA
45
n
56
ALA
45
A
THR
46
n
57
THR
46
A
CYS
47
n
58
CYS
47
A
ILE
48
n
59
ILE
48
A
ASN
49
n
60
ASN
49
A
GLY
50
n
61
GLY
50
A
VAL
51
n
62
VAL
51
A
CYS
52
n
63
CYS
52
A
TRP
53
n
64
TRP
53
A
THR
54
n
65
THR
54
A
VAL
55
n
66
VAL
55
A
TYR
56
n
67
TYR
56
A
HIS
57
n
68
HIS
57
A
GLY
58
n
69
GLY
58
A
ALA
59
n
70
ALA
59
A
GLY
60
n
71
GLY
60
A
THR
61
n
72
THR
61
A
ARG
62
n
73
ARG
62
A
THR
63
n
74
THR
63
A
ILE
64
n
75
ILE
64
A
ALA
65
n
76
ALA
65
A
SER
66
n
77
SER
66
A
PRO
67
n
78
PRO
67
A
LYS
68
n
79
LYS
68
A
GLY
69
n
80
GLY
69
A
PRO
70
n
81
PRO
70
A
VAL
71
n
82
VAL
71
A
ILE
72
n
83
ILE
72
A
GLN
73
n
84
GLN
73
A
MET
74
n
85
MET
74
A
TYR
75
n
86
TYR
75
A
THR
76
n
87
THR
76
A
ASN
77
n
88
ASN
77
A
VAL
78
n
89
VAL
78
A
ASP
79
n
90
ASP
79
A
GLN
80
n
91
GLN
80
A
ASP
81
n
92
ASP
81
A
LEU
82
n
93
LEU
82
A
VAL
83
n
94
VAL
83
A
GLY
84
n
95
GLY
84
A
TRP
85
n
96
TRP
85
A
PRO
86
n
97
PRO
86
A
ALA
87
n
98
ALA
87
A
PRO
88
n
99
PRO
88
A
GLN
89
n
100
GLN
89
A
GLY
90
n
101
GLY
90
A
SER
91
n
102
SER
91
A
ARG
92
n
103
ARG
92
A
SER
93
n
104
SER
93
A
LEU
94
n
105
LEU
94
A
THR
95
n
106
THR
95
A
PRO
96
n
107
PRO
96
A
CYS
97
n
108
CYS
97
A
THR
98
n
109
THR
98
A
CYS
99
n
110
CYS
99
A
GLY
100
n
111
GLY
100
A
SER
101
n
112
SER
101
A
SER
102
n
113
SER
102
A
ASP
103
n
114
ASP
103
A
LEU
104
n
115
LEU
104
A
TYR
105
n
116
TYR
105
A
LEU
106
n
117
LEU
106
A
VAL
107
n
118
VAL
107
A
THR
108
n
119
THR
108
A
ARG
109
n
120
ARG
109
A
HIS
110
n
121
HIS
110
A
ALA
111
n
122
ALA
111
A
ASP
112
n
123
ASP
112
A
VAL
113
n
124
VAL
113
A
ILE
114
n
125
ILE
114
A
PRO
115
n
126
PRO
115
A
VAL
116
n
127
VAL
116
A
ARG
117
n
128
ARG
117
A
ARG
118
n
129
ARG
118
A
ARG
119
n
130
ARG
119
A
GLY
120
n
131
GLY
120
A
ASP
121
n
132
ASP
121
A
SER
122
n
133
SER
122
A
ARG
123
n
134
ARG
123
A
GLY
124
n
135
GLY
124
A
SER
125
n
136
SER
125
A
LEU
126
n
137
LEU
126
A
LEU
127
n
138
LEU
127
A
SER
128
n
139
SER
128
A
PRO
129
n
140
PRO
129
A
ARG
130
n
141
ARG
130
A
PRO
131
n
142
PRO
131
A
ILE
132
n
143
ILE
132
A
SER
133
n
144
SER
133
A
TYR
134
n
145
TYR
134
A
LEU
135
n
146
LEU
135
A
LYS
136
n
147
LYS
136
A
GLY
137
n
148
GLY
137
A
SER
138
n
149
SER
138
A
SER
139
n
150
SER
139
A
GLY
140
n
151
GLY
140
A
GLY
141
n
152
GLY
141
A
PRO
142
n
153
PRO
142
A
LEU
143
n
154
LEU
143
A
LEU
144
n
155
LEU
144
A
CYS
145
n
156
CYS
145
A
PRO
146
n
157
PRO
146
A
ALA
147
n
158
ALA
147
A
GLY
148
n
159
GLY
148
A
HIS
149
n
160
HIS
149
A
ALA
150
n
161
ALA
150
A
VAL
151
n
162
VAL
151
A
GLY
152
n
163
GLY
152
A
LEU
153
n
164
LEU
153
A
PHE
154
n
165
PHE
154
A
ARG
155
n
166
ARG
155
A
ALA
156
n
167
ALA
156
A
ALA
157
n
168
ALA
157
A
VAL
158
n
169
VAL
158
A
CYS
159
n
170
CYS
159
A
THR
160
n
171
THR
160
A
ARG
161
n
172
ARG
161
A
GLY
162
n
173
GLY
162
A
VAL
163
n
174
VAL
163
A
ALA
164
n
175
ALA
164
A
LYS
165
n
176
LYS
165
A
ALA
166
n
177
ALA
166
A
VAL
167
n
178
VAL
167
A
ASP
168
n
179
ASP
168
A
PHE
169
n
180
PHE
169
A
ILE
170
n
181
ILE
170
A
PRO
171
n
182
PRO
171
A
VAL
172
n
183
VAL
172
A
GLU
173
n
184
GLU
173
A
ASN
174
n
185
ASN
174
A
LEU
175
n
186
LEU
175
A
GLU
176
n
187
GLU
176
A
THR
177
n
188
THR
177
A
THR
178
n
189
THR
178
A
MET
179
n
190
MET
179
A
ARG
180
n
191
ARG
180
A
SER
181
n
192
SER
181
A
n
193
182
A
n
194
183
A
n
195
184
A
n
196
185
A
n
197
186
A
n
198
187
A
n
199
188
A
n
200
189
A
n
1
19
B
LYS
20
n
2
LYS
20
B
GLY
21
n
3
GLY
21
B
SER
22
n
4
SER
22
B
VAL
23
n
5
VAL
23
B
VAL
24
n
6
VAL
24
B
ILE
25
n
7
ILE
25
B
VAL
26
n
8
VAL
26
B
GLY
27
n
9
GLY
27
B
ARG
28
n
10
ARG
28
B
ILE
29
n
11
ILE
29
B
VAL
30
n
12
VAL
30
B
LEU
31
n
13
LEU
31
B
SER
32
n
14
SER
32
B
GLY
33
n
15
GLY
33
B
LYS
34
n
16
LYS
34
B
PRO
35
n
17
PRO
35
B
ALA
36
n
18
ALA
36
B
ILE
37
n
19
ILE
37
B
ILE
38
n
20
ILE
38
B
PRO
39
n
21
PRO
39
B
LYS
40
n
22
LYS
40
B
LYS
41
n
23
LYS
41
B
n
1
-10
C
n
2
-9
C
n
3
-8
C
n
4
-7
C
n
5
-6
C
n
6
-5
C
n
7
-4
C
n
8
-3
C
n
9
-2
C
n
10
-1
C
n
11
0
C
n
12
1
C
n
13
2
C
n
14
3
C
n
15
4
C
n
16
5
C
n
17
6
C
n
18
7
C
n
19
8
C
n
20
9
C
n
21
10
C
n
22
11
C
n
23
12
C
n
24
13
C
n
25
14
C
n
26
15
C
n
27
16
C
n
28
17
C
n
29
18
C
n
30
19
C
n
31
20
C
n
32
21
C
n
33
22
C
n
34
23
C
n
35
24
C
n
36
25
C
n
37
26
C
n
38
27
C
n
39
28
C
VAL
29
n
40
VAL
29
C
GLU
30
n
41
GLU
30
C
GLY
31
n
42
GLY
31
C
GLU
32
n
43
GLU
32
C
VAL
33
n
44
VAL
33
C
GLN
34
n
45
GLN
34
C
ILE
35
n
46
ILE
35
C
VAL
36
n
47
VAL
36
C
SER
37
n
48
SER
37
C
THR
38
n
49
THR
38
C
ALA
39
n
50
ALA
39
C
THR
40
n
51
THR
40
C
GLN
41
n
52
GLN
41
C
THR
42
n
53
THR
42
C
PHE
43
n
54
PHE
43
C
LEU
44
n
55
LEU
44
C
ALA
45
n
56
ALA
45
C
THR
46
n
57
THR
46
C
CYS
47
n
58
CYS
47
C
ILE
48
n
59
ILE
48
C
ASN
49
n
60
ASN
49
C
GLY
50
n
61
GLY
50
C
VAL
51
n
62
VAL
51
C
CYS
52
n
63
CYS
52
C
TRP
53
n
64
TRP
53
C
THR
54
n
65
THR
54
C
VAL
55
n
66
VAL
55
C
TYR
56
n
67
TYR
56
C
HIS
57
n
68
HIS
57
C
GLY
58
n
69
GLY
58
C
ALA
59
n
70
ALA
59
C
GLY
60
n
71
GLY
60
C
THR
61
n
72
THR
61
C
ARG
62
n
73
ARG
62
C
THR
63
n
74
THR
63
C
ILE
64
n
75
ILE
64
C
ALA
65
n
76
ALA
65
C
SER
66
n
77
SER
66
C
PRO
67
n
78
PRO
67
C
LYS
68
n
79
LYS
68
C
GLY
69
n
80
GLY
69
C
PRO
70
n
81
PRO
70
C
VAL
71
n
82
VAL
71
C
ILE
72
n
83
ILE
72
C
GLN
73
n
84
GLN
73
C
MET
74
n
85
MET
74
C
TYR
75
n
86
TYR
75
C
THR
76
n
87
THR
76
C
ASN
77
n
88
ASN
77
C
VAL
78
n
89
VAL
78
C
ASP
79
n
90
ASP
79
C
GLN
80
n
91
GLN
80
C
ASP
81
n
92
ASP
81
C
LEU
82
n
93
LEU
82
C
VAL
83
n
94
VAL
83
C
GLY
84
n
95
GLY
84
C
TRP
85
n
96
TRP
85
C
PRO
86
n
97
PRO
86
C
ALA
87
n
98
ALA
87
C
PRO
88
n
99
PRO
88
C
GLN
89
n
100
GLN
89
C
GLY
90
n
101
GLY
90
C
SER
91
n
102
SER
91
C
ARG
92
n
103
ARG
92
C
SER
93
n
104
SER
93
C
LEU
94
n
105
LEU
94
C
THR
95
n
106
THR
95
C
PRO
96
n
107
PRO
96
C
CYS
97
n
108
CYS
97
C
THR
98
n
109
THR
98
C
CYS
99
n
110
CYS
99
C
GLY
100
n
111
GLY
100
C
SER
101
n
112
SER
101
C
SER
102
n
113
SER
102
C
ASP
103
n
114
ASP
103
C
LEU
104
n
115
LEU
104
C
TYR
105
n
116
TYR
105
C
LEU
106
n
117
LEU
106
C
VAL
107
n
118
VAL
107
C
THR
108
n
119
THR
108
C
ARG
109
n
120
ARG
109
C
HIS
110
n
121
HIS
110
C
ALA
111
n
122
ALA
111
C
ASP
112
n
123
ASP
112
C
VAL
113
n
124
VAL
113
C
ILE
114
n
125
ILE
114
C
PRO
115
n
126
PRO
115
C
VAL
116
n
127
VAL
116
C
ARG
117
n
128
ARG
117
C
ARG
118
n
129
ARG
118
C
ARG
119
n
130
ARG
119
C
GLY
120
n
131
GLY
120
C
ASP
121
n
132
ASP
121
C
SER
122
n
133
SER
122
C
ARG
123
n
134
ARG
123
C
GLY
124
n
135
GLY
124
C
SER
125
n
136
SER
125
C
LEU
126
n
137
LEU
126
C
LEU
127
n
138
LEU
127
C
SER
128
n
139
SER
128
C
PRO
129
n
140
PRO
129
C
ARG
130
n
141
ARG
130
C
PRO
131
n
142
PRO
131
C
ILE
132
n
143
ILE
132
C
SER
133
n
144
SER
133
C
TYR
134
n
145
TYR
134
C
LEU
135
n
146
LEU
135
C
LYS
136
n
147
LYS
136
C
GLY
137
n
148
GLY
137
C
SER
138
n
149
SER
138
C
SER
139
n
150
SER
139
C
GLY
140
n
151
GLY
140
C
GLY
141
n
152
GLY
141
C
PRO
142
n
153
PRO
142
C
LEU
143
n
154
LEU
143
C
LEU
144
n
155
LEU
144
C
CYS
145
n
156
CYS
145
C
PRO
146
n
157
PRO
146
C
ALA
147
n
158
ALA
147
C
GLY
148
n
159
GLY
148
C
HIS
149
n
160
HIS
149
C
ALA
150
n
161
ALA
150
C
VAL
151
n
162
VAL
151
C
GLY
152
n
163
GLY
152
C
LEU
153
n
164
LEU
153
C
PHE
154
n
165
PHE
154
C
ARG
155
n
166
ARG
155
C
ALA
156
n
167
ALA
156
C
ALA
157
n
168
ALA
157
C
VAL
158
n
169
VAL
158
C
CYS
159
n
170
CYS
159
C
THR
160
n
171
THR
160
C
ARG
161
n
172
ARG
161
C
GLY
162
n
173
GLY
162
C
VAL
163
n
174
VAL
163
C
ALA
164
n
175
ALA
164
C
LYS
165
n
176
LYS
165
C
ALA
166
n
177
ALA
166
C
VAL
167
n
178
VAL
167
C
ASP
168
n
179
ASP
168
C
PHE
169
n
180
PHE
169
C
ILE
170
n
181
ILE
170
C
PRO
171
n
182
PRO
171
C
VAL
172
n
183
VAL
172
C
GLU
173
n
184
GLU
173
C
ASN
174
n
185
ASN
174
C
LEU
175
n
186
LEU
175
C
GLU
176
n
187
GLU
176
C
THR
177
n
188
THR
177
C
THR
178
n
189
THR
178
C
MET
179
n
190
MET
179
C
n
191
180
C
n
192
181
C
n
193
182
C
n
194
183
C
n
195
184
C
n
196
185
C
n
197
186
C
n
198
187
C
n
199
188
C
n
200
189
C
n
1
19
D
n
2
20
D
GLY
21
n
3
GLY
21
D
SER
22
n
4
SER
22
D
VAL
23
n
5
VAL
23
D
VAL
24
n
6
VAL
24
D
ILE
25
n
7
ILE
25
D
VAL
26
n
8
VAL
26
D
GLY
27
n
9
GLY
27
D
ARG
28
n
10
ARG
28
D
ILE
29
n
11
ILE
29
D
VAL
30
n
12
VAL
30
D
LEU
31
n
13
LEU
31
D
SER
32
n
14
SER
32
D
GLY
33
n
15
GLY
33
D
LYS
34
n
16
LYS
34
D
PRO
35
n
17
PRO
35
D
ALA
36
n
18
ALA
36
D
n
19
37
D
n
20
38
D
n
21
39
D
n
22
40
D
n
23
41
D
author_and_software_defined_assembly
PISA
2
dimeric
author_and_software_defined_assembly
PISA
2
dimeric
software_defined_assembly
PISA
4
tetrameric
2680
-51
10090
1690
-47
7780
6670
-121
15580
A
CYS
97
A
SG
CYS
108
1_555
A
ZN
901
E
ZN
ZN
1_555
A
CYS
99
A
SG
CYS
110
1_555
103.8
A
CYS
97
A
SG
CYS
108
1_555
A
ZN
901
E
ZN
ZN
1_555
A
CYS
145
A
SG
CYS
156
1_555
101.3
A
CYS
99
A
SG
CYS
110
1_555
A
ZN
901
E
ZN
ZN
1_555
A
CYS
145
A
SG
CYS
156
1_555
116.2
C
CYS
97
C
SG
CYS
108
1_555
C
ZN
901
G
ZN
ZN
1_555
C
CYS
145
C
SG
CYS
156
1_555
91.1
C
CYS
97
C
SG
CYS
108
1_555
C
ZN
901
G
ZN
ZN
1_555
C
HOH
190
J
O
HOH
1_555
114.0
C
CYS
145
C
SG
CYS
156
1_555
C
ZN
901
G
ZN
ZN
1_555
C
HOH
190
J
O
HOH
1_555
122.2
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
TYR
6
A
N
TYR
17
B
O
VAL
30
B
O
VAL
12
B
O
GLY
27
B
O
GLY
9
A
N
ILE
35
A
N
ILE
46
A
N
VAL
36
A
N
VAL
47
A
O
PHE
43
A
O
PHE
54
A
N
THR
46
A
N
THR
57
A
O
TRP
53
A
O
TRP
64
A
N
CYS
52
A
N
CYS
63
A
O
TRP
85
A
O
TRP
96
A
O
LEU
82
A
O
LEU
93
A
N
ASN
77
A
N
ASN
88
A
N
ILE
64
A
N
ILE
75
A
O
VAL
71
A
O
VAL
82
A
N
LEU
104
A
N
LEU
115
A
O
VAL
116
A
O
VAL
127
A
N
ARG
117
A
N
ARG
128
A
O
SER
125
A
O
SER
136
A
N
ARG
130
A
N
ARG
141
A
O
ALA
164
A
O
ALA
175
A
O
ASP
168
A
O
ASP
179
A
N
ALA
156
A
N
ALA
167
A
O
VAL
151
A
O
VAL
162
A
N
LEU
143
A
N
LEU
154
A
O
LEU
144
A
O
LEU
155
A
N
TYR
105
A
N
TYR
116
B
N
ALA
36
B
N
ALA
18
D
O
VAL
30
D
O
VAL
12
D
O
VAL
23
D
O
VAL
5
C
N
THR
63
C
N
THR
74
B
N
ALA
36
B
N
ALA
18
D
O
VAL
30
D
O
VAL
12
D
O
VAL
26
D
O
VAL
8
C
N
ILE
35
C
N
ILE
46
C
N
GLN
34
C
N
GLN
45
C
O
ALA
45
C
O
ALA
56
C
N
THR
46
C
N
THR
57
C
O
TRP
53
C
O
TRP
64
C
N
CYS
52
C
N
CYS
63
C
O
TRP
85
C
O
TRP
96
C
O
LEU
82
C
O
LEU
93
C
N
ASN
77
C
N
ASN
88
C
N
LEU
104
C
N
LEU
115
C
O
VAL
116
C
O
VAL
127
C
N
ARG
119
C
N
ARG
130
C
O
ARG
123
C
O
ARG
134
C
N
ARG
130
C
N
ARG
141
C
O
ALA
164
C
O
ALA
175
C
O
ALA
166
C
O
ALA
177
C
N
VAL
158
C
N
VAL
169
C
O
VAL
151
C
O
VAL
162
C
N
LEU
143
C
N
LEU
154
C
O
LEU
144
C
O
LEU
155
C
N
TYR
105
C
N
TYR
116
1
A
MET
-10
A
MET
1
1
Y
1
A
ALA
-9
A
ALA
2
1
Y
1
A
SER
-8
A
SER
3
1
Y
1
A
MET
-7
A
MET
4
1
Y
1
A
THR
-6
A
THR
5
1
Y
1
A
GLY
-5
A
GLY
6
1
Y
1
A
GLY
-4
A
GLY
7
1
Y
1
A
GLN
-3
A
GLN
8
1
Y
1
A
GLN
-2
A
GLN
9
1
Y
1
A
MET
-1
A
MET
10
1
Y
1
A
GLY
0
A
GLY
11
1
Y
1
A
GLY
182
A
GLY
193
1
Y
1
A
SER
183
A
SER
194
1
Y
1
A
HIS
184
A
HIS
195
1
Y
1
A
HIS
185
A
HIS
196
1
Y
1
A
HIS
186
A
HIS
197
1
Y
1
A
HIS
187
A
HIS
198
1
Y
1
A
HIS
188
A
HIS
199
1
Y
1
A
HIS
189
A
HIS
200
1
Y
1
B
LYS
19
B
LYS
1
1
Y
1
C
MET
-10
C
MET
1
1
Y
1
C
ALA
-9
C
ALA
2
1
Y
1
C
SER
-8
C
SER
3
1
Y
1
C
MET
-7
C
MET
4
1
Y
1
C
THR
-6
C
THR
5
1
Y
1
C
GLY
-5
C
GLY
6
1
Y
1
C
GLY
-4
C
GLY
7
1
Y
1
C
GLN
-3
C
GLN
8
1
Y
1
C
GLN
-2
C
GLN
9
1
Y
1
C
MET
-1
C
MET
10
1
Y
1
C
GLY
0
C
GLY
11
1
Y
1
C
ALA
1
C
ALA
12
1
Y
1
C
PRO
2
C
PRO
13
1
Y
1
C
ILE
3
C
ILE
14
1
Y
1
C
THR
4
C
THR
15
1
Y
1
C
ALA
5
C
ALA
16
1
Y
1
C
TYR
6
C
TYR
17
1
Y
1
C
ALA
7
C
ALA
18
1
Y
1
C
GLN
8
C
GLN
19
1
Y
1
C
GLN
9
C
GLN
20
1
Y
1
C
THR
10
C
THR
21
1
Y
1
C
ARG
11
C
ARG
22
1
Y
1
C
GLY
12
C
GLY
23
1
Y
1
C
LEU
13
C
LEU
24
1
Y
1
C
LEU
14
C
LEU
25
1
Y
1
C
GLY
15
C
GLY
26
1
Y
1
C
CYS
16
C
CYS
27
1
Y
1
C
ILE
17
C
ILE
28
1
Y
1
C
ILE
18
C
ILE
29
1
Y
1
C
THR
19
C
THR
30
1
Y
1
C
SER
20
C
SER
31
1
Y
1
C
LEU
21
C
LEU
32
1
Y
1
C
THR
22
C
THR
33
1
Y
1
C
GLY
23
C
GLY
34
1
Y
1
C
ARG
24
C
ARG
35
1
Y
1
C
ASP
25
C
ASP
36
1
Y
1
C
LYS
26
C
LYS
37
1
Y
1
C
ASN
27
C
ASN
38
1
Y
1
C
GLN
28
C
GLN
39
1
Y
1
C
ARG
180
C
ARG
191
1
Y
1
C
SER
181
C
SER
192
1
Y
1
C
GLY
182
C
GLY
193
1
Y
1
C
SER
183
C
SER
194
1
Y
1
C
HIS
184
C
HIS
195
1
Y
1
C
HIS
185
C
HIS
196
1
Y
1
C
HIS
186
C
HIS
197
1
Y
1
C
HIS
187
C
HIS
198
1
Y
1
C
HIS
188
C
HIS
199
1
Y
1
C
HIS
189
C
HIS
200
1
Y
1
D
LYS
19
D
LYS
1
1
Y
1
D
LYS
20
D
LYS
2
1
Y
1
D
ILE
37
D
ILE
19
1
Y
1
D
ILE
38
D
ILE
20
1
Y
1
D
PRO
39
D
PRO
21
1
Y
1
D
LYS
40
D
LYS
22
1
Y
1
D
LYS
41
D
LYS
23
1
Y
1
A
A
ZN
O
ZN
HOH
901
197
1.65
1
A
A
OG
O43
SER
BE8
139
401
1.88
1
A
ARG
119
-109.99
-72.06
1
B
PRO
35
-39.34
128.59
0.256
0.180
2.30
8.0
2089
25697
20909
Random
1
anoistropic
THROUGHOUT
1.0
FOURIER SYNTHESIS
HCV NS3(1-181)S139A - NS4a
pdb2o8m.ent
2.30
8.0
257
3029
45
0
2727
0.009
2.019
1.476
0.3443
0.2876
2.40
103
972
40
2.15
50
3EYD
39911
28576
1.0
0.075
1
13.5
2.8
71.6
0.288
2.15
2.20
2.0
2631
20.6
data collection
ADSC
Quantum
model building
X-PLOR
refinement
X-PLOR
98.1
data reduction
HKL-2000
data scaling
SCALEPACK
phasing
X-PLOR
Structure of HCV NS3-4A Protease with an Inhibitor Derived from a Boronic Acid
1
N
N
2
N
N
1
N
N
2
N
N
3
N
N
4
N
N
3
N
N
5
N
N
5
N
N
5
N
N
5
N
N
The asymmetric unit contains a dimer of the NS3-NS4a complex. This is only the protease domain of NS3 and a peptide of NS4a. This dimeric structure is the result of the soultion structure of the domain. The full length NS3 contains a 3-domain helicase as well and would not have the same dimeric interfaces.
A
GLY
12
A
GLY
23
HELX_P
A
GLY
23
A
GLY
34
1
1
12
A
TYR
56
A
TYR
67
HELX_P
A
GLY
60
A
GLY
71
1
2
5
A
ILE
132
A
ILE
143
HELX_P
A
LYS
136
A
LYS
147
1
3
5
A
VAL
172
A
VAL
183
HELX_P
A
ARG
180
A
ARG
191
1
4
9
C
TYR
56
C
TYR
67
HELX_P
C
GLY
60
C
GLY
71
1
5
5
C
ILE
132
C
ILE
143
HELX_P
C
LYS
136
C
LYS
147
1
6
5
C
VAL
172
C
VAL
183
HELX_P
C
MET
179
C
MET
190
1
7
8
covale
1.453
none
A
SER
139
A
OG
SER
150
1_555
A
BE8
401
F
B36
BE8
1_555
metalc
2.131
A
CYS
97
A
SG
CYS
108
1_555
A
ZN
901
E
ZN
ZN
1_555
metalc
2.184
A
CYS
99
A
SG
CYS
110
1_555
A
ZN
901
E
ZN
ZN
1_555
metalc
2.447
A
CYS
145
A
SG
CYS
156
1_555
A
ZN
901
E
ZN
ZN
1_555
metalc
2.286
C
CYS
97
C
SG
CYS
108
1_555
C
ZN
901
G
ZN
ZN
1_555
metalc
2.156
C
CYS
145
C
SG
CYS
156
1_555
C
ZN
901
G
ZN
ZN
1_555
metalc
2.350
C
HOH
190
J
O
HOH
1_555
C
ZN
901
G
ZN
ZN
1_555
VIRAL PROTEIN
Hepatitis C Virus, NS3 Protease Domain, serine protease, boronic acid inhibitor, Envelope protein, Helicase, Hydrolase, Nucleotide-binding, RNA replication, Transmembrane, VIRAL PROTEIN
Q9ELS8_9HEPC
UNP
1
1027
Q9ELS8
APITAYAQQTRGLLGCIITSLTGRDKNQVEGEVQIVSTATQTFLATCINGVCWTVYHGAGTRTIASPKGPVIQMYTNVDQ
DLVGWPAPQGSRSLTPCTCGSSDLYLVTRHADVIPVRRQGDSRGSLLSPRPISYLKGSSGGPLLCPAGHAVGLFRAAVCT
RGVAKAVDFIPVENLETTMRS
Q9ELS8_9HEPC
UNP
2
1678
Q9ELS8
GCVVIVGRIVLSGKPAIIP
1027
1207
3EYD
1
181
Q9ELS8
A
1
12
192
1678
1696
3EYD
21
39
Q9ELS8
B
2
3
21
1027
1207
3EYD
1
181
Q9ELS8
C
1
12
192
1678
1696
3EYD
21
39
Q9ELS8
D
2
3
21
1
expression tag
MET
-10
3EYD
A
Q9ELS8
UNP
1
1
expression tag
ALA
-9
3EYD
A
Q9ELS8
UNP
2
1
expression tag
SER
-8
3EYD
A
Q9ELS8
UNP
3
1
expression tag
MET
-7
3EYD
A
Q9ELS8
UNP
4
1
expression tag
THR
-6
3EYD
A
Q9ELS8
UNP
5
1
expression tag
GLY
-5
3EYD
A
Q9ELS8
UNP
6
1
expression tag
GLY
-4
3EYD
A
Q9ELS8
UNP
7
1
expression tag
GLN
-3
3EYD
A
Q9ELS8
UNP
8
1
expression tag
GLN
-2
3EYD
A
Q9ELS8
UNP
9
1
expression tag
MET
-1
3EYD
A
Q9ELS8
UNP
10
1
expression tag
GLY
0
3EYD
A
Q9ELS8
UNP
11
1
GLN
conflict
ARG
119
3EYD
A
Q9ELS8
UNP
1145
130
1
expression tag
GLY
182
3EYD
A
Q9ELS8
UNP
193
1
expression tag
SER
183
3EYD
A
Q9ELS8
UNP
194
1
expression tag
HIS
184
3EYD
A
Q9ELS8
UNP
195
1
expression tag
HIS
185
3EYD
A
Q9ELS8
UNP
196
1
expression tag
HIS
186
3EYD
A
Q9ELS8
UNP
197
1
expression tag
HIS
187
3EYD
A
Q9ELS8
UNP
198
1
expression tag
HIS
188
3EYD
A
Q9ELS8
UNP
199
1
expression tag
HIS
189
3EYD
A
Q9ELS8
UNP
200
2
expression tag
LYS
19
3EYD
B
Q9ELS8
UNP
1
2
expression tag
LYS
20
3EYD
B
Q9ELS8
UNP
2
2
CYS
engineered mutation
SER
22
3EYD
B
Q9ELS8
UNP
1679
4
2
expression tag
LYS
40
3EYD
B
Q9ELS8
UNP
22
2
expression tag
LYS
41
3EYD
B
Q9ELS8
UNP
23
3
expression tag
MET
-10
3EYD
C
Q9ELS8
UNP
1
3
expression tag
ALA
-9
3EYD
C
Q9ELS8
UNP
2
3
expression tag
SER
-8
3EYD
C
Q9ELS8
UNP
3
3
expression tag
MET
-7
3EYD
C
Q9ELS8
UNP
4
3
expression tag
THR
-6
3EYD
C
Q9ELS8
UNP
5
3
expression tag
GLY
-5
3EYD
C
Q9ELS8
UNP
6
3
expression tag
GLY
-4
3EYD
C
Q9ELS8
UNP
7
3
expression tag
GLN
-3
3EYD
C
Q9ELS8
UNP
8
3
expression tag
GLN
-2
3EYD
C
Q9ELS8
UNP
9
3
expression tag
MET
-1
3EYD
C
Q9ELS8
UNP
10
3
expression tag
GLY
0
3EYD
C
Q9ELS8
UNP
11
3
GLN
conflict
ARG
119
3EYD
C
Q9ELS8
UNP
1145
130
3
expression tag
GLY
182
3EYD
C
Q9ELS8
UNP
193
3
expression tag
SER
183
3EYD
C
Q9ELS8
UNP
194
3
expression tag
HIS
184
3EYD
C
Q9ELS8
UNP
195
3
expression tag
HIS
185
3EYD
C
Q9ELS8
UNP
196
3
expression tag
HIS
186
3EYD
C
Q9ELS8
UNP
197
3
expression tag
HIS
187
3EYD
C
Q9ELS8
UNP
198
3
expression tag
HIS
188
3EYD
C
Q9ELS8
UNP
199
3
expression tag
HIS
189
3EYD
C
Q9ELS8
UNP
200
4
expression tag
LYS
19
3EYD
D
Q9ELS8
UNP
1
4
expression tag
LYS
20
3EYD
D
Q9ELS8
UNP
2
4
CYS
engineered mutation
SER
22
3EYD
D
Q9ELS8
UNP
1679
4
4
expression tag
LYS
40
3EYD
D
Q9ELS8
UNP
22
4
expression tag
LYS
41
3EYD
D
Q9ELS8
UNP
23
7
2
7
3
7
7
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
TYR
6
A
TYR
17
A
GLN
9
A
GLN
20
B
VAL
24
B
VAL
6
B
VAL
30
B
VAL
12
A
VAL
33
A
VAL
44
A
SER
37
A
SER
48
A
THR
42
A
THR
53
A
ILE
48
A
ILE
59
A
VAL
51
A
VAL
62
A
VAL
55
A
VAL
66
A
LEU
82
A
LEU
93
A
PRO
86
A
PRO
97
A
TYR
75
A
TYR
86
A
ASN
77
A
ASN
88
A
ILE
64
A
ILE
75
A
SER
66
A
SER
77
A
GLY
69
A
GLY
80
A
VAL
71
A
VAL
82
A
ASP
103
A
ASP
114
A
VAL
107
A
VAL
118
A
VAL
113
A
VAL
124
A
ARG
118
A
ARG
129
A
ARG
123
A
ARG
134
A
PRO
131
A
PRO
142
A
VAL
163
A
VAL
174
A
PRO
171
A
PRO
182
A
ALA
150
A
ALA
161
A
THR
160
A
THR
171
A
PRO
142
A
PRO
153
A
LEU
144
A
LEU
155
A
ASP
103
A
ASP
114
A
VAL
107
A
VAL
118
B
ALA
36
B
ALA
18
B
ILE
37
B
ILE
19
D
SER
22
D
SER
4
D
VAL
30
D
VAL
12
C
THR
63
C
THR
74
C
ILE
64
C
ILE
75
B
ALA
36
B
ALA
18
B
ILE
37
B
ILE
19
D
SER
22
D
SER
4
D
VAL
30
D
VAL
12
C
VAL
33
C
VAL
44
C
SER
37
C
SER
48
C
THR
42
C
THR
53
C
ILE
48
C
ILE
59
C
VAL
51
C
VAL
62
C
VAL
55
C
VAL
66
C
LEU
82
C
LEU
93
C
PRO
86
C
PRO
97
C
TYR
75
C
TYR
86
C
ASN
77
C
ASN
88
C
ASP
103
C
ASP
114
C
VAL
107
C
VAL
118
C
VAL
113
C
VAL
124
C
GLY
120
C
GLY
131
C
ARG
123
C
ARG
134
C
PRO
131
C
PRO
142
C
VAL
163
C
VAL
174
C
PRO
171
C
PRO
182
C
ALA
150
C
ALA
161
C
THR
160
C
THR
171
C
PRO
142
C
PRO
153
C
LEU
144
C
LEU
155
C
ASP
103
C
ASP
114
C
VAL
107
C
VAL
118
BINDING SITE FOR RESIDUE ZN A 901
A
ZN
901
Software
4
BINDING SITE FOR RESIDUE BE8 A 401
A
BE8
401
Software
13
BINDING SITE FOR RESIDUE ZN C 901
C
ZN
901
Software
4
A
CYS
97
A
CYS
108
4
1_555
A
CYS
99
A
CYS
110
4
1_555
A
CYS
145
A
CYS
156
4
1_555
A
HOH
197
H
HOH
4
1_555
A
HIS
57
A
HIS
68
13
1_555
A
ARG
123
A
ARG
134
13
1_555
A
ILE
132
A
ILE
143
13
1_555
A
GLY
137
A
GLY
148
13
1_555
A
SER
138
A
SER
149
13
1_555
A
SER
139
A
SER
150
13
1_555
A
PHE
154
A
PHE
165
13
1_555
A
ARG
155
A
ARG
166
13
1_555
A
ALA
156
A
ALA
167
13
1_555
A
ALA
157
A
ALA
168
13
1_555
A
VAL
158
A
VAL
169
13
1_555
A
CYS
159
A
CYS
170
13
1_555
A
HOH
238
H
HOH
13
1_555
C
CYS
97
C
CYS
108
4
1_555
C
CYS
99
C
CYS
110
4
1_555
C
CYS
145
C
CYS
156
4
1_555
C
HOH
190
J
HOH
4
1_555
155
H 3 2