0.008140
0.004700
0.000000
0.000000
0.009399
0.000000
0.000000
0.000000
0.018006
0.00000
0.00000
0.00000
Ng, C.
Jackson, R.A.
Buschdorf, J.P.
Sun, Q.
Guy, G.R.
Sivaraman, J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.000
90.000
120.000
122.851
122.851
55.537
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C9 H12 N O6 P
261.168
n
O-PHOSPHOTYROSINE
PHOSPHONOTYROSINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
O
N
295
N
C
Y
296
N
C
Y
297
N
C
Y
298
N
C
Y
299
N
C
Y
300
N
C
Y
301
N
C
N
302
N
O
N
303
N
P
N
304
N
O
N
305
N
O
N
306
N
O
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
N
N
320
S
C
N
321
N
C
N
322
N
O
N
323
N
C
N
324
N
O
N
325
N
O
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
N
N
334
S
C
N
335
N
C
N
336
N
O
N
337
R
C
N
338
N
O
N
339
N
C
N
340
N
O
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
N
N
351
S
C
N
352
N
C
N
353
N
O
N
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
N
Y
359
N
C
Y
360
N
C
Y
361
N
C
Y
362
N
C
Y
363
N
C
N
364
N
O
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
N
N
378
S
C
N
379
N
C
N
380
N
O
N
381
N
C
Y
382
N
C
Y
383
N
C
Y
384
N
C
Y
385
N
C
Y
386
N
C
Y
387
N
C
N
388
N
O
N
389
N
O
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
N
N
402
S
C
N
403
N
C
N
404
N
O
N
405
N
C
N
406
N
C
N
407
N
C
N
408
N
O
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
Y
289
N
doub
Y
290
N
sing
Y
291
N
sing
N
292
N
sing
Y
293
N
doub
N
294
N
sing
Y
295
N
doub
N
296
N
sing
Y
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
doub
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
doub
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
doub
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
Y
346
N
doub
Y
347
N
sing
Y
348
N
sing
N
349
N
sing
Y
350
N
doub
Y
351
N
sing
Y
352
N
sing
N
353
N
sing
Y
354
N
sing
Y
355
N
doub
N
356
N
sing
Y
357
N
doub
N
358
N
sing
Y
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
doub
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
Y
374
N
doub
Y
375
N
sing
Y
376
N
sing
N
377
N
sing
Y
378
N
doub
N
379
N
sing
Y
380
N
doub
N
381
N
sing
Y
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
doub
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
UK
Embo J.
EMJODG
0897
0261-4189
27
804
816
10.1038/emboj.2008.18
18273061
Structural basis for a novel intrapeptidyl H-bond and reverse binding of c-Cbl-TKB domain substrates
2008
10.2210/pdb3bun/pdb
pdb_00003bun
100
1
CCD
2007-03-25
ADSC QUANTUM 315
SINGLE WAVELENGTH
x-ray
1
1.0
1.0
X29A
NSLS
1.0
SYNCHROTRON
NSLS BEAMLINE X29A
1583.527
13-meric peptide from Protein sprouty homolog 4
UNP residues 46-58, pTyr-53 phosphopeptide
1
syn
polymer
38192.090
E3 ubiquitin-protein ligase CBL
6.3.2.-
c-Cbl TKB domain, CBL N-terminal, UNP residues 23-351
1
man
polymer
18.015
water
354
nat
water
Spry-4, Sprouty-4
Signal transduction protein CBL, Proto-oncogene c-CBL, Casitas B-lineage lymphoma proto-oncogene, RING finger protein 55
no
yes
SHVEND(PTR)IDNPSL
SHVENDYIDNPSL
A
polypeptide(L)
no
no
GSLIGLMKDAFQPHHHHHHHLSPHPPGTVDKKMVEKCWKLMDKVVRLCQNPKLALKNSPPYILDLLPDTYQHLRTILSRY
EGKMETLGENEYFRVFMENLMKKTKQTISLFKEGKERMYEENSQPRRNLTKLSLIFSHMLAELKGIFPSGLFQGDTFRIT
KADAAEFWRKAFGEKTIVPWKSFRQALHEVHPISSGLEAMALKSTIDLTCNDYISVFEFDIFTRLFQPWSSLLRNWNSLA
VTHPGYMAFLTYDEVKARLQKFIHKPGSYIFRLSCTRLGQWAIGYVTADGNILQTIPHNKPLFQALIDGFREGFYLFPDG
RNQNPDLTG
GSLIGLMKDAFQPHHHHHHHLSPHPPGTVDKKMVEKCWKLMDKVVRLCQNPKLALKNSPPYILDLLPDTYQHLRTILSRY
EGKMETLGENEYFRVFMENLMKKTKQTISLFKEGKERMYEENSQPRRNLTKLSLIFSHMLAELKGIFPSGLFQGDTFRIT
KADAAEFWRKAFGEKTIVPWKSFRQALHEVHPISSGLEAMALKSTIDLTCNDYISVFEFDIFTRLFQPWSSLLRNWNSLA
VTHPGYMAFLTYDEVKARLQKFIHKPGSYIFRLSCTRLGQWAIGYVTADGNILQTIPHNKPLFQALIDGFREGFYLFPDG
RNQNPDLTG
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Escherichia
sample
CBL, CBL2, RNF55
9606
Homo sapiens
562
Escherichia coli
Rosetta
plasmid
Cas-Br-M (murine) ecotropic retroviral transforming sequence
pGEX4T1
1
3.04
59.56
VAPOR DIFFUSION, HANGING DROP
7.5
0.2M NA/K TARTRATE, 20% PEG 3350, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
software
entity
pdbx_entity_src_syn
struct
struct_conn
struct_ref_seq_dif
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
chem_comp_atom
chem_comp_bond
repository
Initial release
Version format compliance
Refinement description
Database references
Derived calculations
Source and taxonomy
Structure summary
Data collection
Database references
Refinement description
Data collection
1
0
2008-02-26
1
1
2011-07-13
1
2
2017-10-25
1
3
2020-09-16
1
4
2023-11-01
1
5
2023-11-15
_entity.pdbx_description
_pdbx_entity_src_syn.details
_pdbx_entity_src_syn.ncbi_taxonomy_id
_pdbx_entity_src_syn.organism_common_name
_pdbx_entity_src_syn.organism_scientific
_struct.pdbx_descriptor
_struct_conn.pdbx_leaving_atom_flag
_struct_ref_seq_dif.details
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_chem_comp_atom.atom_id
_chem_comp_bond.atom_id_2
c-Cbl-TKB domain complexed with its binding motif in Sprouty2
c-Cbl-TKB domain complexed with its binding motif in EGF receptor
c-Cbl-TKB domain complexed with its binding motif in Syk
c-Cbl-TKB domain complexed with its binding motif in c-Met
RCSB
Y
PDBJ
2008-01-03
REL
REL
HOH
water
9606
Human
Homo sapiens
sample
2CBL
PDB ENTRY 2CBL
PDB
experimental model
WAT
4
3
HOH
HOH
60
A
WAT
10
3
HOH
HOH
61
A
WAT
18
3
HOH
HOH
62
A
WAT
42
3
HOH
HOH
63
A
WAT
58
3
HOH
HOH
64
A
WAT
91
3
HOH
HOH
66
A
WAT
100
3
HOH
HOH
67
A
WAT
101
3
HOH
HOH
68
A
WAT
128
3
HOH
HOH
69
A
WAT
131
3
HOH
HOH
70
A
WAT
142
3
HOH
HOH
71
A
WAT
182
3
HOH
HOH
72
A
WAT
201
3
HOH
HOH
73
A
WAT
217
3
HOH
HOH
74
A
WAT
228
3
HOH
HOH
75
A
WAT
230
3
HOH
HOH
76
A
WAT
288
3
HOH
HOH
78
A
WAT
306
3
HOH
HOH
79
A
WAT
339
3
HOH
HOH
80
A
WAT
348
3
HOH
HOH
81
A
WAT
75
3
HOH
HOH
352
B
WAT
242
3
HOH
HOH
353
B
WAT
1
3
HOH
HOH
354
B
WAT
2
3
HOH
HOH
355
B
WAT
3
3
HOH
HOH
356
B
WAT
5
3
HOH
HOH
357
B
WAT
6
3
HOH
HOH
358
B
WAT
7
3
HOH
HOH
359
B
WAT
8
3
HOH
HOH
360
B
WAT
9
3
HOH
HOH
361
B
WAT
11
3
HOH
HOH
362
B
WAT
12
3
HOH
HOH
363
B
WAT
13
3
HOH
HOH
364
B
WAT
14
3
HOH
HOH
365
B
WAT
15
3
HOH
HOH
366
B
WAT
16
3
HOH
HOH
367
B
WAT
17
3
HOH
HOH
368
B
WAT
19
3
HOH
HOH
369
B
WAT
20
3
HOH
HOH
370
B
WAT
21
3
HOH
HOH
371
B
WAT
22
3
HOH
HOH
372
B
WAT
23
3
HOH
HOH
373
B
WAT
24
3
HOH
HOH
374
B
WAT
25
3
HOH
HOH
375
B
WAT
26
3
HOH
HOH
376
B
WAT
27
3
HOH
HOH
377
B
WAT
28
3
HOH
HOH
378
B
WAT
29
3
HOH
HOH
379
B
WAT
30
3
HOH
HOH
380
B
WAT
31
3
HOH
HOH
381
B
WAT
32
3
HOH
HOH
382
B
WAT
33
3
HOH
HOH
383
B
WAT
34
3
HOH
HOH
384
B
WAT
35
3
HOH
HOH
385
B
WAT
36
3
HOH
HOH
386
B
WAT
37
3
HOH
HOH
387
B
WAT
38
3
HOH
HOH
388
B
WAT
39
3
HOH
HOH
389
B
WAT
40
3
HOH
HOH
390
B
WAT
41
3
HOH
HOH
391
B
WAT
43
3
HOH
HOH
392
B
WAT
44
3
HOH
HOH
393
B
WAT
45
3
HOH
HOH
394
B
WAT
46
3
HOH
HOH
395
B
WAT
47
3
HOH
HOH
396
B
WAT
48
3
HOH
HOH
397
B
WAT
49
3
HOH
HOH
398
B
WAT
50
3
HOH
HOH
399
B
WAT
51
3
HOH
HOH
400
B
WAT
52
3
HOH
HOH
401
B
WAT
53
3
HOH
HOH
402
B
WAT
54
3
HOH
HOH
403
B
WAT
55
3
HOH
HOH
404
B
WAT
56
3
HOH
HOH
405
B
WAT
57
3
HOH
HOH
406
B
WAT
59
3
HOH
HOH
407
B
WAT
60
3
HOH
HOH
408
B
WAT
61
3
HOH
HOH
409
B
WAT
62
3
HOH
HOH
410
B
WAT
63
3
HOH
HOH
411
B
WAT
64
3
HOH
HOH
412
B
WAT
65
3
HOH
HOH
413
B
WAT
66
3
HOH
HOH
414
B
WAT
67
3
HOH
HOH
415
B
WAT
68
3
HOH
HOH
416
B
WAT
69
3
HOH
HOH
417
B
WAT
70
3
HOH
HOH
418
B
WAT
71
3
HOH
HOH
419
B
WAT
72
3
HOH
HOH
420
B
WAT
73
3
HOH
HOH
421
B
WAT
74
3
HOH
HOH
422
B
WAT
76
3
HOH
HOH
423
B
WAT
77
3
HOH
HOH
424
B
WAT
78
3
HOH
HOH
425
B
WAT
79
3
HOH
HOH
426
B
WAT
80
3
HOH
HOH
427
B
WAT
81
3
HOH
HOH
428
B
WAT
82
3
HOH
HOH
429
B
WAT
83
3
HOH
HOH
430
B
WAT
84
3
HOH
HOH
431
B
WAT
85
3
HOH
HOH
432
B
WAT
86
3
HOH
HOH
433
B
WAT
87
3
HOH
HOH
434
B
WAT
88
3
HOH
HOH
435
B
WAT
89
3
HOH
HOH
436
B
WAT
90
3
HOH
HOH
437
B
WAT
92
3
HOH
HOH
438
B
WAT
93
3
HOH
HOH
439
B
WAT
94
3
HOH
HOH
440
B
WAT
95
3
HOH
HOH
441
B
WAT
96
3
HOH
HOH
442
B
WAT
97
3
HOH
HOH
443
B
WAT
98
3
HOH
HOH
444
B
WAT
99
3
HOH
HOH
445
B
WAT
102
3
HOH
HOH
446
B
WAT
103
3
HOH
HOH
447
B
WAT
104
3
HOH
HOH
448
B
WAT
105
3
HOH
HOH
449
B
WAT
106
3
HOH
HOH
450
B
WAT
107
3
HOH
HOH
451
B
WAT
108
3
HOH
HOH
452
B
WAT
109
3
HOH
HOH
453
B
WAT
110
3
HOH
HOH
454
B
WAT
111
3
HOH
HOH
455
B
WAT
112
3
HOH
HOH
456
B
WAT
113
3
HOH
HOH
457
B
WAT
114
3
HOH
HOH
458
B
WAT
115
3
HOH
HOH
459
B
WAT
116
3
HOH
HOH
460
B
WAT
117
3
HOH
HOH
461
B
WAT
118
3
HOH
HOH
462
B
WAT
119
3
HOH
HOH
463
B
WAT
120
3
HOH
HOH
464
B
WAT
121
3
HOH
HOH
465
B
WAT
122
3
HOH
HOH
466
B
WAT
123
3
HOH
HOH
467
B
WAT
124
3
HOH
HOH
468
B
WAT
125
3
HOH
HOH
469
B
WAT
126
3
HOH
HOH
470
B
WAT
127
3
HOH
HOH
471
B
WAT
129
3
HOH
HOH
472
B
WAT
130
3
HOH
HOH
473
B
WAT
132
3
HOH
HOH
474
B
WAT
133
3
HOH
HOH
475
B
WAT
134
3
HOH
HOH
476
B
WAT
135
3
HOH
HOH
477
B
WAT
136
3
HOH
HOH
478
B
WAT
137
3
HOH
HOH
479
B
WAT
138
3
HOH
HOH
480
B
WAT
139
3
HOH
HOH
481
B
WAT
140
3
HOH
HOH
482
B
WAT
141
3
HOH
HOH
483
B
WAT
143
3
HOH
HOH
484
B
WAT
144
3
HOH
HOH
485
B
WAT
145
3
HOH
HOH
486
B
WAT
146
3
HOH
HOH
487
B
WAT
147
3
HOH
HOH
488
B
WAT
148
3
HOH
HOH
489
B
WAT
149
3
HOH
HOH
490
B
WAT
150
3
HOH
HOH
491
B
WAT
151
3
HOH
HOH
492
B
WAT
152
3
HOH
HOH
493
B
WAT
153
3
HOH
HOH
494
B
WAT
154
3
HOH
HOH
495
B
WAT
155
3
HOH
HOH
496
B
WAT
156
3
HOH
HOH
497
B
WAT
157
3
HOH
HOH
498
B
WAT
158
3
HOH
HOH
499
B
WAT
159
3
HOH
HOH
500
B
WAT
160
3
HOH
HOH
501
B
WAT
161
3
HOH
HOH
502
B
WAT
162
3
HOH
HOH
503
B
WAT
163
3
HOH
HOH
504
B
WAT
164
3
HOH
HOH
505
B
WAT
165
3
HOH
HOH
506
B
WAT
166
3
HOH
HOH
507
B
WAT
167
3
HOH
HOH
508
B
WAT
168
3
HOH
HOH
509
B
WAT
169
3
HOH
HOH
510
B
WAT
170
3
HOH
HOH
511
B
WAT
171
3
HOH
HOH
512
B
WAT
172
3
HOH
HOH
513
B
WAT
173
3
HOH
HOH
514
B
WAT
174
3
HOH
HOH
515
B
WAT
175
3
HOH
HOH
516
B
WAT
176
3
HOH
HOH
517
B
WAT
177
3
HOH
HOH
518
B
WAT
178
3
HOH
HOH
519
B
WAT
179
3
HOH
HOH
520
B
WAT
180
3
HOH
HOH
521
B
WAT
181
3
HOH
HOH
522
B
WAT
183
3
HOH
HOH
523
B
WAT
184
3
HOH
HOH
524
B
WAT
185
3
HOH
HOH
525
B
WAT
186
3
HOH
HOH
526
B
WAT
187
3
HOH
HOH
527
B
WAT
188
3
HOH
HOH
528
B
WAT
189
3
HOH
HOH
529
B
WAT
190
3
HOH
HOH
530
B
WAT
191
3
HOH
HOH
531
B
WAT
192
3
HOH
HOH
532
B
WAT
193
3
HOH
HOH
533
B
WAT
194
3
HOH
HOH
534
B
WAT
195
3
HOH
HOH
535
B
WAT
196
3
HOH
HOH
536
B
WAT
197
3
HOH
HOH
537
B
WAT
198
3
HOH
HOH
538
B
WAT
199
3
HOH
HOH
539
B
WAT
200
3
HOH
HOH
540
B
WAT
202
3
HOH
HOH
541
B
WAT
203
3
HOH
HOH
542
B
WAT
204
3
HOH
HOH
543
B
WAT
205
3
HOH
HOH
544
B
WAT
206
3
HOH
HOH
545
B
WAT
207
3
HOH
HOH
546
B
WAT
208
3
HOH
HOH
547
B
WAT
209
3
HOH
HOH
548
B
WAT
210
3
HOH
HOH
549
B
WAT
211
3
HOH
HOH
550
B
WAT
212
3
HOH
HOH
551
B
WAT
213
3
HOH
HOH
552
B
WAT
214
3
HOH
HOH
553
B
WAT
215
3
HOH
HOH
554
B
WAT
216
3
HOH
HOH
555
B
WAT
218
3
HOH
HOH
556
B
WAT
219
3
HOH
HOH
557
B
WAT
220
3
HOH
HOH
558
B
WAT
221
3
HOH
HOH
559
B
WAT
222
3
HOH
HOH
560
B
WAT
223
3
HOH
HOH
561
B
WAT
224
3
HOH
HOH
562
B
WAT
225
3
HOH
HOH
563
B
WAT
226
3
HOH
HOH
564
B
WAT
227
3
HOH
HOH
565
B
WAT
229
3
HOH
HOH
566
B
WAT
231
3
HOH
HOH
567
B
WAT
232
3
HOH
HOH
568
B
WAT
233
3
HOH
HOH
569
B
WAT
234
3
HOH
HOH
570
B
WAT
235
3
HOH
HOH
571
B
WAT
236
3
HOH
HOH
572
B
WAT
237
3
HOH
HOH
573
B
WAT
238
3
HOH
HOH
574
B
WAT
239
3
HOH
HOH
575
B
WAT
240
3
HOH
HOH
576
B
WAT
241
3
HOH
HOH
577
B
WAT
243
3
HOH
HOH
578
B
WAT
244
3
HOH
HOH
579
B
WAT
245
3
HOH
HOH
580
B
WAT
246
3
HOH
HOH
581
B
WAT
247
3
HOH
HOH
582
B
WAT
248
3
HOH
HOH
583
B
WAT
249
3
HOH
HOH
584
B
WAT
250
3
HOH
HOH
585
B
WAT
251
3
HOH
HOH
586
B
WAT
252
3
HOH
HOH
587
B
WAT
253
3
HOH
HOH
588
B
WAT
254
3
HOH
HOH
589
B
WAT
255
3
HOH
HOH
590
B
WAT
256
3
HOH
HOH
591
B
WAT
257
3
HOH
HOH
592
B
WAT
258
3
HOH
HOH
593
B
WAT
259
3
HOH
HOH
594
B
WAT
260
3
HOH
HOH
595
B
WAT
261
3
HOH
HOH
596
B
WAT
262
3
HOH
HOH
597
B
WAT
263
3
HOH
HOH
598
B
WAT
264
3
HOH
HOH
599
B
WAT
265
3
HOH
HOH
600
B
WAT
266
3
HOH
HOH
601
B
WAT
267
3
HOH
HOH
602
B
WAT
268
3
HOH
HOH
603
B
WAT
269
3
HOH
HOH
604
B
WAT
270
3
HOH
HOH
605
B
WAT
271
3
HOH
HOH
606
B
WAT
272
3
HOH
HOH
607
B
WAT
273
3
HOH
HOH
608
B
WAT
274
3
HOH
HOH
609
B
WAT
275
3
HOH
HOH
610
B
WAT
276
3
HOH
HOH
611
B
WAT
277
3
HOH
HOH
612
B
WAT
278
3
HOH
HOH
613
B
WAT
279
3
HOH
HOH
614
B
WAT
280
3
HOH
HOH
615
B
WAT
281
3
HOH
HOH
616
B
WAT
282
3
HOH
HOH
617
B
WAT
283
3
HOH
HOH
618
B
WAT
284
3
HOH
HOH
619
B
WAT
285
3
HOH
HOH
620
B
WAT
286
3
HOH
HOH
621
B
WAT
287
3
HOH
HOH
622
B
WAT
289
3
HOH
HOH
623
B
WAT
290
3
HOH
HOH
624
B
WAT
291
3
HOH
HOH
625
B
WAT
292
3
HOH
HOH
626
B
WAT
293
3
HOH
HOH
627
B
WAT
294
3
HOH
HOH
628
B
WAT
295
3
HOH
HOH
629
B
WAT
296
3
HOH
HOH
630
B
WAT
297
3
HOH
HOH
631
B
WAT
298
3
HOH
HOH
632
B
WAT
299
3
HOH
HOH
633
B
WAT
300
3
HOH
HOH
634
B
WAT
301
3
HOH
HOH
635
B
WAT
302
3
HOH
HOH
636
B
WAT
303
3
HOH
HOH
637
B
WAT
304
3
HOH
HOH
638
B
WAT
305
3
HOH
HOH
639
B
WAT
307
3
HOH
HOH
640
B
WAT
308
3
HOH
HOH
641
B
WAT
309
3
HOH
HOH
642
B
WAT
310
3
HOH
HOH
643
B
WAT
311
3
HOH
HOH
644
B
WAT
312
3
HOH
HOH
645
B
WAT
313
3
HOH
HOH
646
B
WAT
314
3
HOH
HOH
647
B
WAT
315
3
HOH
HOH
648
B
WAT
316
3
HOH
HOH
649
B
WAT
317
3
HOH
HOH
650
B
WAT
318
3
HOH
HOH
651
B
WAT
319
3
HOH
HOH
652
B
WAT
320
3
HOH
HOH
653
B
WAT
321
3
HOH
HOH
654
B
WAT
322
3
HOH
HOH
655
B
WAT
323
3
HOH
HOH
656
B
WAT
324
3
HOH
HOH
657
B
WAT
325
3
HOH
HOH
658
B
WAT
326
3
HOH
HOH
659
B
WAT
327
3
HOH
HOH
660
B
WAT
328
3
HOH
HOH
661
B
WAT
329
3
HOH
HOH
662
B
WAT
330
3
HOH
HOH
663
B
WAT
331
3
HOH
HOH
664
B
WAT
332
3
HOH
HOH
665
B
WAT
333
3
HOH
HOH
666
B
WAT
334
3
HOH
HOH
667
B
WAT
335
3
HOH
HOH
668
B
WAT
336
3
HOH
HOH
669
B
WAT
337
3
HOH
HOH
670
B
WAT
338
3
HOH
HOH
671
B
WAT
340
3
HOH
HOH
672
B
WAT
341
3
HOH
HOH
673
B
WAT
342
3
HOH
HOH
674
B
WAT
343
3
HOH
HOH
675
B
WAT
344
3
HOH
HOH
676
B
WAT
345
3
HOH
HOH
677
B
WAT
346
3
HOH
HOH
678
B
WAT
347
3
HOH
HOH
679
B
WAT
349
3
HOH
HOH
680
B
WAT
350
3
HOH
HOH
681
B
WAT
351
3
HOH
HOH
682
B
WAT
352
3
HOH
HOH
683
B
WAT
353
3
HOH
HOH
684
B
WAT
354
3
HOH
HOH
685
B
n
1
47
A
n
2
48
A
n
3
49
A
n
4
50
A
ASN
51
n
5
ASN
51
A
ASP
52
n
6
ASP
52
A
PTR
53
n
7
PTR
53
A
ILE
54
n
8
ILE
54
A
ASP
55
n
9
ASP
55
A
ASN
56
n
10
ASN
56
A
PRO
57
n
11
PRO
57
A
n
12
58
A
n
13
59
A
n
1
23
B
n
2
24
B
n
3
25
B
n
4
26
B
n
5
27
B
n
6
28
B
n
7
29
B
n
8
30
B
n
9
31
B
n
10
32
B
n
11
33
B
n
12
34
B
n
13
35
B
n
14
36
B
n
15
37
B
n
16
38
B
n
17
39
B
n
18
40
B
n
19
41
B
n
20
42
B
n
21
43
B
n
22
44
B
n
23
45
B
n
24
46
B
n
25
47
B
PRO
48
n
26
PRO
48
B
GLY
49
n
27
GLY
49
B
THR
50
n
28
THR
50
B
VAL
51
n
29
VAL
51
B
ASP
52
n
30
ASP
52
B
LYS
53
n
31
LYS
53
B
LYS
54
n
32
LYS
54
B
MET
55
n
33
MET
55
B
VAL
56
n
34
VAL
56
B
GLU
57
n
35
GLU
57
B
LYS
58
n
36
LYS
58
B
CYS
59
n
37
CYS
59
B
TRP
60
n
38
TRP
60
B
LYS
61
n
39
LYS
61
B
LEU
62
n
40
LEU
62
B
MET
63
n
41
MET
63
B
ASP
64
n
42
ASP
64
B
LYS
65
n
43
LYS
65
B
VAL
66
n
44
VAL
66
B
VAL
67
n
45
VAL
67
B
ARG
68
n
46
ARG
68
B
LEU
69
n
47
LEU
69
B
CYS
70
n
48
CYS
70
B
GLN
71
n
49
GLN
71
B
ASN
72
n
50
ASN
72
B
PRO
73
n
51
PRO
73
B
LYS
74
n
52
LYS
74
B
LEU
75
n
53
LEU
75
B
ALA
76
n
54
ALA
76
B
LEU
77
n
55
LEU
77
B
LYS
78
n
56
LYS
78
B
ASN
79
n
57
ASN
79
B
SER
80
n
58
SER
80
B
PRO
81
n
59
PRO
81
B
PRO
82
n
60
PRO
82
B
TYR
83
n
61
TYR
83
B
ILE
84
n
62
ILE
84
B
LEU
85
n
63
LEU
85
B
ASP
86
n
64
ASP
86
B
LEU
87
n
65
LEU
87
B
LEU
88
n
66
LEU
88
B
PRO
89
n
67
PRO
89
B
ASP
90
n
68
ASP
90
B
THR
91
n
69
THR
91
B
TYR
92
n
70
TYR
92
B
GLN
93
n
71
GLN
93
B
HIS
94
n
72
HIS
94
B
LEU
95
n
73
LEU
95
B
ARG
96
n
74
ARG
96
B
THR
97
n
75
THR
97
B
ILE
98
n
76
ILE
98
B
LEU
99
n
77
LEU
99
B
SER
100
n
78
SER
100
B
ARG
101
n
79
ARG
101
B
TYR
102
n
80
TYR
102
B
GLU
103
n
81
GLU
103
B
GLY
104
n
82
GLY
104
B
LYS
105
n
83
LYS
105
B
MET
106
n
84
MET
106
B
GLU
107
n
85
GLU
107
B
THR
108
n
86
THR
108
B
LEU
109
n
87
LEU
109
B
GLY
110
n
88
GLY
110
B
GLU
111
n
89
GLU
111
B
ASN
112
n
90
ASN
112
B
GLU
113
n
91
GLU
113
B
TYR
114
n
92
TYR
114
B
PHE
115
n
93
PHE
115
B
ARG
116
n
94
ARG
116
B
VAL
117
n
95
VAL
117
B
PHE
118
n
96
PHE
118
B
MET
119
n
97
MET
119
B
GLU
120
n
98
GLU
120
B
ASN
121
n
99
ASN
121
B
LEU
122
n
100
LEU
122
B
MET
123
n
101
MET
123
B
LYS
124
n
102
LYS
124
B
LYS
125
n
103
LYS
125
B
THR
126
n
104
THR
126
B
LYS
127
n
105
LYS
127
B
GLN
128
n
106
GLN
128
B
THR
129
n
107
THR
129
B
ILE
130
n
108
ILE
130
B
SER
131
n
109
SER
131
B
LEU
132
n
110
LEU
132
B
PHE
133
n
111
PHE
133
B
LYS
134
n
112
LYS
134
B
GLU
135
n
113
GLU
135
B
GLY
136
n
114
GLY
136
B
LYS
137
n
115
LYS
137
B
GLU
138
n
116
GLU
138
B
ARG
139
n
117
ARG
139
B
MET
140
n
118
MET
140
B
TYR
141
n
119
TYR
141
B
GLU
142
n
120
GLU
142
B
GLU
143
n
121
GLU
143
B
ASN
144
n
122
ASN
144
B
SER
145
n
123
SER
145
B
GLN
146
n
124
GLN
146
B
PRO
147
n
125
PRO
147
B
ARG
148
n
126
ARG
148
B
ARG
149
n
127
ARG
149
B
ASN
150
n
128
ASN
150
B
LEU
151
n
129
LEU
151
B
THR
152
n
130
THR
152
B
LYS
153
n
131
LYS
153
B
LEU
154
n
132
LEU
154
B
SER
155
n
133
SER
155
B
LEU
156
n
134
LEU
156
B
ILE
157
n
135
ILE
157
B
PHE
158
n
136
PHE
158
B
SER
159
n
137
SER
159
B
HIS
160
n
138
HIS
160
B
MET
161
n
139
MET
161
B
LEU
162
n
140
LEU
162
B
ALA
163
n
141
ALA
163
B
GLU
164
n
142
GLU
164
B
LEU
165
n
143
LEU
165
B
LYS
166
n
144
LYS
166
B
GLY
167
n
145
GLY
167
B
ILE
168
n
146
ILE
168
B
PHE
169
n
147
PHE
169
B
PRO
170
n
148
PRO
170
B
SER
171
n
149
SER
171
B
GLY
172
n
150
GLY
172
B
LEU
173
n
151
LEU
173
B
PHE
174
n
152
PHE
174
B
GLN
175
n
153
GLN
175
B
GLY
176
n
154
GLY
176
B
ASP
177
n
155
ASP
177
B
THR
178
n
156
THR
178
B
PHE
179
n
157
PHE
179
B
ARG
180
n
158
ARG
180
B
ILE
181
n
159
ILE
181
B
THR
182
n
160
THR
182
B
LYS
183
n
161
LYS
183
B
ALA
184
n
162
ALA
184
B
ASP
185
n
163
ASP
185
B
ALA
186
n
164
ALA
186
B
ALA
187
n
165
ALA
187
B
GLU
188
n
166
GLU
188
B
PHE
189
n
167
PHE
189
B
TRP
190
n
168
TRP
190
B
ARG
191
n
169
ARG
191
B
LYS
192
n
170
LYS
192
B
ALA
193
n
171
ALA
193
B
PHE
194
n
172
PHE
194
B
GLY
195
n
173
GLY
195
B
GLU
196
n
174
GLU
196
B
LYS
197
n
175
LYS
197
B
THR
198
n
176
THR
198
B
ILE
199
n
177
ILE
199
B
VAL
200
n
178
VAL
200
B
PRO
201
n
179
PRO
201
B
TRP
202
n
180
TRP
202
B
LYS
203
n
181
LYS
203
B
SER
204
n
182
SER
204
B
PHE
205
n
183
PHE
205
B
ARG
206
n
184
ARG
206
B
GLN
207
n
185
GLN
207
B
ALA
208
n
186
ALA
208
B
LEU
209
n
187
LEU
209
B
HIS
210
n
188
HIS
210
B
GLU
211
n
189
GLU
211
B
VAL
212
n
190
VAL
212
B
HIS
213
n
191
HIS
213
B
PRO
214
n
192
PRO
214
B
ILE
215
n
193
ILE
215
B
SER
216
n
194
SER
216
B
SER
217
n
195
SER
217
B
GLY
218
n
196
GLY
218
B
LEU
219
n
197
LEU
219
B
GLU
220
n
198
GLU
220
B
ALA
221
n
199
ALA
221
B
MET
222
n
200
MET
222
B
ALA
223
n
201
ALA
223
B
LEU
224
n
202
LEU
224
B
LYS
225
n
203
LYS
225
B
SER
226
n
204
SER
226
B
THR
227
n
205
THR
227
B
ILE
228
n
206
ILE
228
B
ASP
229
n
207
ASP
229
B
LEU
230
n
208
LEU
230
B
THR
231
n
209
THR
231
B
CYS
232
n
210
CYS
232
B
ASN
233
n
211
ASN
233
B
ASP
234
n
212
ASP
234
B
TYR
235
n
213
TYR
235
B
ILE
236
n
214
ILE
236
B
SER
237
n
215
SER
237
B
VAL
238
n
216
VAL
238
B
PHE
239
n
217
PHE
239
B
GLU
240
n
218
GLU
240
B
PHE
241
n
219
PHE
241
B
ASP
242
n
220
ASP
242
B
ILE
243
n
221
ILE
243
B
PHE
244
n
222
PHE
244
B
THR
245
n
223
THR
245
B
ARG
246
n
224
ARG
246
B
LEU
247
n
225
LEU
247
B
PHE
248
n
226
PHE
248
B
GLN
249
n
227
GLN
249
B
PRO
250
n
228
PRO
250
B
TRP
251
n
229
TRP
251
B
SER
252
n
230
SER
252
B
SER
253
n
231
SER
253
B
LEU
254
n
232
LEU
254
B
LEU
255
n
233
LEU
255
B
ARG
256
n
234
ARG
256
B
ASN
257
n
235
ASN
257
B
TRP
258
n
236
TRP
258
B
ASN
259
n
237
ASN
259
B
SER
260
n
238
SER
260
B
LEU
261
n
239
LEU
261
B
ALA
262
n
240
ALA
262
B
VAL
263
n
241
VAL
263
B
THR
264
n
242
THR
264
B
HIS
265
n
243
HIS
265
B
PRO
266
n
244
PRO
266
B
GLY
267
n
245
GLY
267
B
TYR
268
n
246
TYR
268
B
MET
269
n
247
MET
269
B
ALA
270
n
248
ALA
270
B
PHE
271
n
249
PHE
271
B
LEU
272
n
250
LEU
272
B
THR
273
n
251
THR
273
B
TYR
274
n
252
TYR
274
B
ASP
275
n
253
ASP
275
B
GLU
276
n
254
GLU
276
B
VAL
277
n
255
VAL
277
B
LYS
278
n
256
LYS
278
B
ALA
279
n
257
ALA
279
B
ARG
280
n
258
ARG
280
B
LEU
281
n
259
LEU
281
B
GLN
282
n
260
GLN
282
B
LYS
283
n
261
LYS
283
B
PHE
284
n
262
PHE
284
B
ILE
285
n
263
ILE
285
B
HIS
286
n
264
HIS
286
B
LYS
287
n
265
LYS
287
B
PRO
288
n
266
PRO
288
B
GLY
289
n
267
GLY
289
B
SER
290
n
268
SER
290
B
TYR
291
n
269
TYR
291
B
ILE
292
n
270
ILE
292
B
PHE
293
n
271
PHE
293
B
ARG
294
n
272
ARG
294
B
LEU
295
n
273
LEU
295
B
SER
296
n
274
SER
296
B
CYS
297
n
275
CYS
297
B
THR
298
n
276
THR
298
B
ARG
299
n
277
ARG
299
B
LEU
300
n
278
LEU
300
B
GLY
301
n
279
GLY
301
B
GLN
302
n
280
GLN
302
B
TRP
303
n
281
TRP
303
B
ALA
304
n
282
ALA
304
B
ILE
305
n
283
ILE
305
B
GLY
306
n
284
GLY
306
B
TYR
307
n
285
TYR
307
B
VAL
308
n
286
VAL
308
B
THR
309
n
287
THR
309
B
ALA
310
n
288
ALA
310
B
ASP
311
n
289
ASP
311
B
GLY
312
n
290
GLY
312
B
ASN
313
n
291
ASN
313
B
ILE
314
n
292
ILE
314
B
LEU
315
n
293
LEU
315
B
GLN
316
n
294
GLN
316
B
THR
317
n
295
THR
317
B
ILE
318
n
296
ILE
318
B
PRO
319
n
297
PRO
319
B
HIS
320
n
298
HIS
320
B
ASN
321
n
299
ASN
321
B
LYS
322
n
300
LYS
322
B
PRO
323
n
301
PRO
323
B
LEU
324
n
302
LEU
324
B
PHE
325
n
303
PHE
325
B
GLN
326
n
304
GLN
326
B
ALA
327
n
305
ALA
327
B
LEU
328
n
306
LEU
328
B
ILE
329
n
307
ILE
329
B
ASP
330
n
308
ASP
330
B
GLY
331
n
309
GLY
331
B
PHE
332
n
310
PHE
332
B
ARG
333
n
311
ARG
333
B
GLU
334
n
312
GLU
334
B
GLY
335
n
313
GLY
335
B
PHE
336
n
314
PHE
336
B
TYR
337
n
315
TYR
337
B
LEU
338
n
316
LEU
338
B
PHE
339
n
317
PHE
339
B
PRO
340
n
318
PRO
340
B
ASP
341
n
319
ASP
341
B
GLY
342
n
320
GLY
342
B
ARG
343
n
321
ARG
343
B
ASN
344
n
322
ASN
344
B
GLN
345
n
323
GLN
345
B
ASN
346
n
324
ASN
346
B
PRO
347
n
325
PRO
347
B
ASP
348
n
326
ASP
348
B
LEU
349
n
327
LEU
349
B
THR
350
n
328
THR
350
B
GLY
351
n
329
GLY
351
B
author_defined_assembly
1
monomeric
author_defined_assembly
1
monomeric
software_defined_assembly
PISA
2
dimeric
1040
-7.7
14880
A
PTR
53
O-PHOSPHOTYROSINE
A
PTR
7
TYR
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
B
N
VAL
200
B
N
VAL
178
B
O
ILE
236
B
O
ILE
214
B
O
THR
317
B
O
THR
295
B
N
ILE
305
B
N
ILE
283
B
O
GLY
306
B
O
GLY
284
B
N
ILE
292
B
N
ILE
270
B
N
TYR
291
B
N
TYR
269
B
O
PHE
339
B
O
PHE
317
1
A
SER
47
A
SER
1
1
Y
1
A
HIS
48
A
HIS
2
1
Y
1
A
VAL
49
A
VAL
3
1
Y
1
A
GLU
50
A
GLU
4
1
Y
1
A
SER
58
A
SER
12
1
Y
1
A
LEU
59
A
LEU
13
1
Y
1
B
GLY
23
B
GLY
1
1
Y
1
B
SER
24
B
SER
2
1
Y
1
B
LEU
25
B
LEU
3
1
Y
1
B
ILE
26
B
ILE
4
1
Y
1
B
GLY
27
B
GLY
5
1
Y
1
B
LEU
28
B
LEU
6
1
Y
1
B
MET
29
B
MET
7
1
Y
1
B
LYS
30
B
LYS
8
1
Y
1
B
ASP
31
B
ASP
9
1
Y
1
B
ALA
32
B
ALA
10
1
Y
1
B
PHE
33
B
PHE
11
1
Y
1
B
GLN
34
B
GLN
12
1
Y
1
B
PRO
35
B
PRO
13
1
Y
1
B
HIS
36
B
HIS
14
1
Y
1
B
HIS
37
B
HIS
15
1
Y
1
B
HIS
38
B
HIS
16
1
Y
1
B
HIS
39
B
HIS
17
1
Y
1
B
HIS
40
B
HIS
18
1
Y
1
B
HIS
41
B
HIS
19
1
Y
1
B
HIS
42
B
HIS
20
1
Y
1
B
LEU
43
B
LEU
21
1
Y
1
B
SER
44
B
SER
22
1
Y
1
B
PRO
45
B
PRO
23
1
Y
1
B
HIS
46
B
HIS
24
1
Y
1
B
PRO
47
B
PRO
25
1
Y
1
B
LYS
105
-77.78
36.61
1
B
LYS
137
45.15
-123.31
1
B
ASN
144
91.22
-2.64
1
B
PHE
169
-112.35
58.87
1
B
ALA
270
-42.43
-73.98
1
B
PHE
271
-118.85
68.00
protein_rep.param
water_rep.param
ptr.param
41.990
13.038
3.791
0.000
13.038
0.000
-26.076
0.242
0.201
2.000
20.000
2128
31294
6.500
96.200
RANDOM
1
THROUGHOUT
0.00
MOLECULAR REPLACEMENT
PDB ENTRY 2CBL
47.686
2.000
20.000
354
2906
0
0
2552
0.011
1.364
2.000
50.000
3BUN
31352
0.052
0.817
1
12.500
18.100
96.300
0.151
2.00
2.07
2655
0.417
13.70
82.10
0.133
2.07
2.15
2853
0.453
14.20
88.40
0.113
2.15
2.25
3039
0.509
15.10
94.40
0.100
2.25
2.37
3192
0.538
16.10
98.50
0.091
2.37
2.52
3239
0.585
17.50
100.00
0.077
2.52
2.71
3231
0.681
18.80
100.00
0.073
2.71
2.99
3260
1.176
19.70
100.00
0.061
2.99
3.42
3256
1.163
20.70
100.00
0.044
3.42
4.31
3283
1.071
21.00
99.90
0.037
4.31
50.00
3344
1.003
22.10
99.50
data reduction
Zbyszek Otwinowski
zbyszek@mix.swmed.edu
http://www.lnls.br/infra/linhasluz/denzo-hkl.htm
DENZO
package
data scaling
Zbyszek Otwinowski
zbyszek@mix.swmed.edu
http://www.lnls.br/infra/linhasluz/denzo-hkl.htm
SCALEPACK
package
phasing
A. Vagin
alexei@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/molrep.html
MOLREP
other
refinement
Axel T. Brunger
axel.brunger@yale.edu
Fortran_77
http://cns.csb.yale.edu/v1.1/
CNS
package
data extraction
PDB
sw-help@rcsb.rutgers.edu
September 10, 2007
C++
http://pdb.rutgers.edu/software/
PDB_EXTRACT
package
3.004
data reduction
HKL-2000
data scaling
HKL-2000
Crystal structure of c-Cbl-TKB domain complexed with its binding motif in Sprouty4
1
N
N
2
N
N
3
N
N
3
N
N
B
ASP
52
B
ASP
30
HELX_P
B
GLN
71
B
GLN
49
1
1
20
B
ASN
72
B
ASN
50
HELX_P
B
ALA
76
B
ALA
54
5
2
5
B
TYR
83
B
TYR
61
HELX_P
B
TYR
102
B
TYR
80
1
3
20
B
LYS
105
B
LYS
83
HELX_P
B
ASN
112
B
ASN
90
1
4
8
B
ASN
112
B
ASN
90
HELX_P
B
LYS
137
B
LYS
115
1
5
26
B
GLU
138
B
GLU
116
HELX_P
B
GLU
142
B
GLU
120
5
6
5
B
SER
145
B
SER
123
HELX_P
B
PHE
169
B
PHE
147
1
7
25
B
PRO
170
B
PRO
148
HELX_P
B
LEU
173
B
LEU
151
5
8
4
B
GLN
175
B
GLN
153
HELX_P
B
PHE
179
B
PHE
157
5
9
5
B
LYS
183
B
LYS
161
HELX_P
B
GLY
195
B
GLY
173
1
10
13
B
TRP
202
B
TRP
180
HELX_P
B
HIS
213
B
HIS
191
1
11
12
B
SER
217
B
SER
195
HELX_P
B
ASP
229
B
ASP
207
1
12
13
B
VAL
238
B
VAL
216
HELX_P
B
PHE
248
B
PHE
226
1
13
11
B
PRO
250
B
PRO
228
HELX_P
B
SER
252
B
SER
230
5
14
3
B
SER
253
B
SER
231
HELX_P
B
ALA
262
B
ALA
240
1
15
10
B
THR
273
B
THR
251
HELX_P
B
LYS
283
B
LYS
261
1
16
11
B
PRO
323
B
PRO
301
HELX_P
B
GLU
334
B
GLU
312
1
17
12
covale
1.329
both
A
ASP
52
A
C
ASP
6
1_555
A
PTR
53
A
N
PTR
7
1_555
covale
1.327
both
A
PTR
53
A
C
PTR
7
1_555
A
ILE
54
A
N
ILE
8
1_555
LIGASE/SIGNALING PROTEIN
Cbl, TKB, ligase, signal transduction, proto-oncogene, complex, Alternative splicing, Cytoplasm, Developmental protein, Membrane, Calcium, Metal-binding, Phosphoprotein, SH2 domain, Ubl conjugation pathway, Zinc, Zinc-finger, LIGASE-SIGNALING PROTEIN COMPLEX
B
PRO
81
B
PRO
59
1
B
PRO
82
B
PRO
60
0.08
B
GLN
249
B
GLN
227
1
B
PRO
250
B
PRO
228
0.06
SPY4_HUMAN
UNP
1
46
Q9C004
SHVENDYIDNPSL
CBL_HUMAN
UNP
2
23
P22681
GGLIGLMKDAFQPHHHHHHHLSPHPPGTVDKKMVEKCWKLMDKVVRLCQNPKLALKNSPPYILDLLPDTYQHLRTILSRY
EGKMETLGENEYFRVFMENLMKKTKQTISLFKEGKERMYEENSQPRRNLTKLSLIFSHMLAELKGIFPSGLFQGDTFRIT
KADAAEFWRKAFGEKTIVPWKSFRQALHEVHPISSGLEAMALKSTIDLTCNDYISVFEFDIFTRLFQPWSSLLRNWNSLA
VTHPGYMAFLTYDEVKARLQKFIHKPGSYIFRLSCTRLGQWAIGYVTADGNILQTIPHNKPLFQALIDGFREGFYLFPDG
RNQNPDLTG
46
58
3BUN
47
59
Q9C004
A
1
1
13
23
351
3BUN
23
351
P22681
B
2
1
329
2
GLY
cloning artifact
SER
24
3BUN
B
P22681
UNP
24
2
2
4
anti-parallel
anti-parallel
anti-parallel
parallel
B
ILE
199
B
ILE
177
B
PRO
201
B
PRO
179
B
TYR
235
B
TYR
213
B
SER
237
B
SER
215
B
ILE
314
B
ILE
292
B
THR
317
B
THR
295
B
TRP
303
B
TRP
281
B
VAL
308
B
VAL
286
B
SER
290
B
SER
268
B
LEU
295
B
LEU
273
B
PHE
339
B
PHE
317
B
PRO
340
B
PRO
318
168
P 6