0.007360
0.004249
0.000000
0.000000
0.008498
0.000000
0.000000
0.000000
0.017235
0.00000
0.00000
0.00000
Mukai, Y.
Yamagata, Y.
Tsutsumi, Y.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
27
90.00
90.00
120.00
135.873
135.873
58.023
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
C
N
138
N
O
N
139
N
C
N
140
N
O
N
141
N
C
N
142
N
O
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
N
N
152
S
C
N
153
N
C
N
154
N
O
N
155
N
C
Y
156
N
C
Y
157
N
N
Y
158
N
C
Y
159
N
C
Y
160
N
N
N
161
N
O
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
O
N
173
N
H
N
174
N
H
N
175
N
N
N
176
S
C
N
177
N
C
N
178
N
O
N
179
S
C
N
180
N
C
N
181
N
C
N
182
N
C
N
183
N
O
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
N
N
198
S
C
N
199
N
C
N
200
N
O
N
201
N
C
N
202
N
C
N
203
N
C
N
204
N
C
N
205
N
O
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
N
N
220
S
C
N
221
N
C
N
222
N
O
N
223
N
C
N
224
N
C
N
225
N
C
N
226
N
C
N
227
N
N
N
228
N
O
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
N
N
245
S
C
N
246
N
C
N
247
N
O
N
248
N
C
N
249
N
C
N
250
N
S
N
251
N
C
N
252
N
O
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
N
N
265
S
C
N
266
N
C
N
267
N
O
N
268
N
C
Y
269
N
C
Y
270
N
C
Y
271
N
C
Y
272
N
C
Y
273
N
C
Y
274
N
C
N
275
N
O
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
N
N
288
S
C
N
289
N
C
N
290
N
O
N
291
N
C
N
292
N
C
N
293
N
C
N
294
N
O
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
N
C
N
309
N
O
N
310
N
O
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
N
N
319
S
C
N
320
N
C
N
321
N
O
N
322
R
C
N
323
N
O
N
324
N
C
N
325
N
O
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
N
N
336
S
C
N
337
N
C
N
338
N
O
N
339
N
C
Y
340
N
C
Y
341
N
C
Y
342
N
C
Y
343
N
N
Y
344
N
C
Y
345
N
C
Y
346
N
C
Y
347
N
C
Y
348
N
C
N
349
N
O
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
N
N
363
S
C
N
364
N
C
N
365
N
O
N
366
N
C
Y
367
N
C
Y
368
N
C
Y
369
N
C
Y
370
N
C
Y
371
N
C
Y
372
N
C
N
373
N
O
N
374
N
O
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
N
N
387
S
C
N
388
N
C
N
389
N
O
N
390
N
C
N
391
N
C
N
392
N
C
N
393
N
O
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
Y
153
N
sing
Y
154
N
doub
Y
155
N
doub
N
156
N
sing
Y
157
N
sing
N
158
N
sing
Y
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
doub
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
doub
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
doub
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
doub
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
doub
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
Y
261
N
doub
Y
262
N
sing
Y
263
N
sing
N
264
N
sing
Y
265
N
doub
N
266
N
sing
Y
267
N
doub
N
268
N
sing
Y
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
doub
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
doub
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
doub
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
Y
330
N
doub
Y
331
N
sing
Y
332
N
sing
N
333
N
sing
Y
334
N
doub
Y
335
N
sing
Y
336
N
sing
N
337
N
sing
Y
338
N
sing
Y
339
N
doub
N
340
N
sing
Y
341
N
doub
N
342
N
sing
Y
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
doub
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
Y
358
N
doub
Y
359
N
sing
Y
360
N
sing
N
361
N
sing
Y
362
N
doub
N
363
N
sing
Y
364
N
doub
N
365
N
sing
Y
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
doub
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
385
1221
1229
10.1016/j.jmb.2008.11.053
19084540
Structure-Function Relationship of Tumor Necrosis Factor (TNF) and Its Receptor Interaction Based on 3D Structural Analysis of a Fully Active TNFR1-Selective TNF Mutant
2009
10.2210/pdb2zjc/pdb
pdb_00002zjc
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2003-12-13
ADSC
SINGLE WAVELENGTH
M
x-ray
1
1.0
BL41XU
SPring-8
SYNCHROTRON
SPRING-8 BEAMLINE BL41XU
17081.131
Tumor necrosis factor
R1-6, UNP residues 77-233
K11M, K65S, L29K, R31A, R32G, K90P, K98R, K112N, K128P, E146S, S147T
3
man
polymer
92.094
GLYCEROL
1
syn
non-polymer
18.015
water
59
nat
water
TNF-alpha, Tumor necrosis factor ligand superfamily member 2, TNF-a, Cachectin
no
no
VRSSSRTPSDMPVAHVVANPQAEGQLQWKNAGANALLANGVELRDNQLVVPSEGLYLIYSQVLFSGQGCPSTHVLLTHTI
SRIAVSYQTPVNLLSAIRSPCQRETPEGAEANPWYEPIYLGGVFQLEPGDRLSAEINRPDYLDFASTGQVYFGIIAL
VRSSSRTPSDMPVAHVVANPQAEGQLQWKNAGANALLANGVELRDNQLVVPSEGLYLIYSQVLFSGQGCPSTHVLLTHTI
SRIAVSYQTPVNLLSAIRSPCQRETPEGAEANPWYEPIYLGGVFQLEPGDRLSAEINRPDYLDFASTGQVYFGIIAL
A,B,C
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Human
sample
TNF, TNFA, TNFSF2
9606
Homo sapiens
562
Escherichia coli
BL21(DE3)
PLASMID
pYas(modifed from pUC vector)
1
2.01
38.85
VAPOR DIFFUSION, HANGING DROP
6.5
VAPOR DIFFUSION, HANGING DROP, temperature 293K, pH6.5
293
database_2
struct_ref_seq_dif
struct_site
chem_comp_atom
chem_comp_bond
pdbx_initial_refinement_model
repository
Initial release
Advisory
Version format compliance
Database references
Derived calculations
Data collection
Refinement description
1
0
2009-01-20
1
1
2011-07-13
1
2
2021-11-10
1
3
2023-11-01
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
TNF Receptor Subtype One-selective TNF Mutant with Antagonistic Activity
PDBJ
Y
PDBJ
2008-03-05
REL
REL
GOL
GLYCEROL
HOH
water
1TNF
PDB ENTRY 1TNF
PDB
experimental model
GOL
1
2
GOL
GOL
158
B
HOH
1
3
HOH
HOH
158
A
HOH
13
3
HOH
HOH
164
A
HOH
15
3
HOH
HOH
166
A
HOH
20
3
HOH
HOH
170
A
HOH
21
3
HOH
HOH
171
A
HOH
26
3
HOH
HOH
175
A
HOH
38
3
HOH
HOH
182
A
HOH
45
3
HOH
HOH
187
A
HOH
46
3
HOH
HOH
188
A
HOH
47
3
HOH
HOH
189
A
HOH
50
3
HOH
HOH
192
A
HOH
53
3
HOH
HOH
195
A
HOH
54
3
HOH
HOH
196
A
HOH
55
3
HOH
HOH
197
A
HOH
57
3
HOH
HOH
198
A
HOH
58
3
HOH
HOH
199
A
HOH
60
3
HOH
HOH
200
A
HOH
70
3
HOH
HOH
209
A
HOH
71
3
HOH
HOH
210
A
HOH
2
3
HOH
HOH
159
B
HOH
4
3
HOH
HOH
160
B
HOH
12
3
HOH
HOH
163
B
HOH
16
3
HOH
HOH
167
B
HOH
30
3
HOH
HOH
177
B
HOH
31
3
HOH
HOH
178
B
HOH
40
3
HOH
HOH
184
B
HOH
48
3
HOH
HOH
190
B
HOH
52
3
HOH
HOH
194
B
HOH
61
3
HOH
HOH
201
B
HOH
62
3
HOH
HOH
202
B
HOH
72
3
HOH
HOH
211
B
HOH
73
3
HOH
HOH
212
B
HOH
3
3
HOH
HOH
158
C
HOH
5
3
HOH
HOH
159
C
HOH
7
3
HOH
HOH
160
C
HOH
8
3
HOH
HOH
161
C
HOH
9
3
HOH
HOH
162
C
HOH
14
3
HOH
HOH
165
C
HOH
18
3
HOH
HOH
168
C
HOH
19
3
HOH
HOH
169
C
HOH
22
3
HOH
HOH
172
C
HOH
24
3
HOH
HOH
173
C
HOH
25
3
HOH
HOH
174
C
HOH
27
3
HOH
HOH
176
C
HOH
32
3
HOH
HOH
179
C
HOH
36
3
HOH
HOH
180
C
HOH
37
3
HOH
HOH
181
C
HOH
39
3
HOH
HOH
183
C
HOH
42
3
HOH
HOH
185
C
HOH
43
3
HOH
HOH
186
C
HOH
49
3
HOH
HOH
191
C
HOH
51
3
HOH
HOH
193
C
HOH
63
3
HOH
HOH
203
C
HOH
64
3
HOH
HOH
204
C
HOH
65
3
HOH
HOH
205
C
HOH
66
3
HOH
HOH
206
C
HOH
67
3
HOH
HOH
207
C
HOH
68
3
HOH
HOH
208
C
HOH
74
3
HOH
HOH
213
C
n
1
1
A
n
2
2
A
n
3
3
A
n
4
4
A
n
5
5
A
n
6
6
A
n
7
7
A
PRO
8
n
8
PRO
8
A
SER
9
n
9
SER
9
A
ASP
10
n
10
ASP
10
A
MET
11
n
11
MET
11
A
PRO
12
n
12
PRO
12
A
VAL
13
n
13
VAL
13
A
ALA
14
n
14
ALA
14
A
HIS
15
n
15
HIS
15
A
VAL
16
n
16
VAL
16
A
VAL
17
n
17
VAL
17
A
ALA
18
n
18
ALA
18
A
ASN
19
n
19
ASN
19
A
PRO
20
n
20
PRO
20
A
GLN
21
n
21
GLN
21
A
ALA
22
n
22
ALA
22
A
GLU
23
n
23
GLU
23
A
GLY
24
n
24
GLY
24
A
GLN
25
n
25
GLN
25
A
LEU
26
n
26
LEU
26
A
GLN
27
n
27
GLN
27
A
TRP
28
n
28
TRP
28
A
LYS
29
n
29
LYS
29
A
ASN
30
n
30
ASN
30
A
ALA
31
n
31
ALA
31
A
GLY
32
n
32
GLY
32
A
ALA
33
n
33
ALA
33
A
ASN
34
n
34
ASN
34
A
ALA
35
n
35
ALA
35
A
LEU
36
n
36
LEU
36
A
LEU
37
n
37
LEU
37
A
ALA
38
n
38
ALA
38
A
ASN
39
n
39
ASN
39
A
GLY
40
n
40
GLY
40
A
VAL
41
n
41
VAL
41
A
GLU
42
n
42
GLU
42
A
LEU
43
n
43
LEU
43
A
ARG
44
n
44
ARG
44
A
ASP
45
n
45
ASP
45
A
ASN
46
n
46
ASN
46
A
GLN
47
n
47
GLN
47
A
LEU
48
n
48
LEU
48
A
VAL
49
n
49
VAL
49
A
VAL
50
n
50
VAL
50
A
PRO
51
n
51
PRO
51
A
SER
52
n
52
SER
52
A
GLU
53
n
53
GLU
53
A
GLY
54
n
54
GLY
54
A
LEU
55
n
55
LEU
55
A
TYR
56
n
56
TYR
56
A
LEU
57
n
57
LEU
57
A
ILE
58
n
58
ILE
58
A
TYR
59
n
59
TYR
59
A
SER
60
n
60
SER
60
A
GLN
61
n
61
GLN
61
A
VAL
62
n
62
VAL
62
A
LEU
63
n
63
LEU
63
A
PHE
64
n
64
PHE
64
A
SER
65
n
65
SER
65
A
GLY
66
n
66
GLY
66
A
GLN
67
n
67
GLN
67
A
GLY
68
n
68
GLY
68
A
CYS
69
n
69
CYS
69
A
PRO
70
n
70
PRO
70
A
SER
71
n
71
SER
71
A
THR
72
n
72
THR
72
A
HIS
73
n
73
HIS
73
A
VAL
74
n
74
VAL
74
A
LEU
75
n
75
LEU
75
A
LEU
76
n
76
LEU
76
A
THR
77
n
77
THR
77
A
HIS
78
n
78
HIS
78
A
THR
79
n
79
THR
79
A
ILE
80
n
80
ILE
80
A
SER
81
n
81
SER
81
A
ARG
82
n
82
ARG
82
A
ILE
83
n
83
ILE
83
A
ALA
84
n
84
ALA
84
A
VAL
85
n
85
VAL
85
A
SER
86
n
86
SER
86
A
TYR
87
n
87
TYR
87
A
GLN
88
n
88
GLN
88
A
THR
89
n
89
THR
89
A
PRO
90
n
90
PRO
90
A
VAL
91
n
91
VAL
91
A
ASN
92
n
92
ASN
92
A
LEU
93
n
93
LEU
93
A
LEU
94
n
94
LEU
94
A
SER
95
n
95
SER
95
A
ALA
96
n
96
ALA
96
A
ILE
97
n
97
ILE
97
A
ARG
98
n
98
ARG
98
A
SER
99
n
99
SER
99
A
PRO
100
n
100
PRO
100
A
CYS
101
n
101
CYS
101
A
GLN
102
n
102
GLN
102
A
n
103
103
A
n
104
104
A
n
105
105
A
n
106
106
A
n
107
107
A
n
108
108
A
n
109
109
A
n
110
110
A
ALA
111
n
111
ALA
111
A
ASN
112
n
112
ASN
112
A
PRO
113
n
113
PRO
113
A
TRP
114
n
114
TRP
114
A
TYR
115
n
115
TYR
115
A
GLU
116
n
116
GLU
116
A
PRO
117
n
117
PRO
117
A
ILE
118
n
118
ILE
118
A
TYR
119
n
119
TYR
119
A
LEU
120
n
120
LEU
120
A
GLY
121
n
121
GLY
121
A
GLY
122
n
122
GLY
122
A
VAL
123
n
123
VAL
123
A
PHE
124
n
124
PHE
124
A
GLN
125
n
125
GLN
125
A
LEU
126
n
126
LEU
126
A
GLU
127
n
127
GLU
127
A
PRO
128
n
128
PRO
128
A
GLY
129
n
129
GLY
129
A
ASP
130
n
130
ASP
130
A
ARG
131
n
131
ARG
131
A
LEU
132
n
132
LEU
132
A
SER
133
n
133
SER
133
A
ALA
134
n
134
ALA
134
A
GLU
135
n
135
GLU
135
A
ILE
136
n
136
ILE
136
A
ASN
137
n
137
ASN
137
A
ARG
138
n
138
ARG
138
A
PRO
139
n
139
PRO
139
A
ASP
140
n
140
ASP
140
A
TYR
141
n
141
TYR
141
A
LEU
142
n
142
LEU
142
A
ASP
143
n
143
ASP
143
A
PHE
144
n
144
PHE
144
A
ALA
145
n
145
ALA
145
A
SER
146
n
146
SER
146
A
THR
147
n
147
THR
147
A
GLY
148
n
148
GLY
148
A
GLN
149
n
149
GLN
149
A
VAL
150
n
150
VAL
150
A
TYR
151
n
151
TYR
151
A
PHE
152
n
152
PHE
152
A
GLY
153
n
153
GLY
153
A
ILE
154
n
154
ILE
154
A
ILE
155
n
155
ILE
155
A
ALA
156
n
156
ALA
156
A
LEU
157
n
157
LEU
157
A
n
1
1
B
n
2
2
B
n
3
3
B
n
4
4
B
n
5
5
B
n
6
6
B
THR
7
n
7
THR
7
B
PRO
8
n
8
PRO
8
B
SER
9
n
9
SER
9
B
ASP
10
n
10
ASP
10
B
MET
11
n
11
MET
11
B
PRO
12
n
12
PRO
12
B
VAL
13
n
13
VAL
13
B
ALA
14
n
14
ALA
14
B
HIS
15
n
15
HIS
15
B
VAL
16
n
16
VAL
16
B
VAL
17
n
17
VAL
17
B
ALA
18
n
18
ALA
18
B
ASN
19
n
19
ASN
19
B
PRO
20
n
20
PRO
20
B
GLN
21
n
21
GLN
21
B
ALA
22
n
22
ALA
22
B
GLU
23
n
23
GLU
23
B
GLY
24
n
24
GLY
24
B
GLN
25
n
25
GLN
25
B
LEU
26
n
26
LEU
26
B
GLN
27
n
27
GLN
27
B
TRP
28
n
28
TRP
28
B
LYS
29
n
29
LYS
29
B
ASN
30
n
30
ASN
30
B
ALA
31
n
31
ALA
31
B
GLY
32
n
32
GLY
32
B
ALA
33
n
33
ALA
33
B
ASN
34
n
34
ASN
34
B
ALA
35
n
35
ALA
35
B
LEU
36
n
36
LEU
36
B
LEU
37
n
37
LEU
37
B
ALA
38
n
38
ALA
38
B
ASN
39
n
39
ASN
39
B
GLY
40
n
40
GLY
40
B
VAL
41
n
41
VAL
41
B
GLU
42
n
42
GLU
42
B
LEU
43
n
43
LEU
43
B
ARG
44
n
44
ARG
44
B
ASP
45
n
45
ASP
45
B
ASN
46
n
46
ASN
46
B
GLN
47
n
47
GLN
47
B
LEU
48
n
48
LEU
48
B
VAL
49
n
49
VAL
49
B
VAL
50
n
50
VAL
50
B
PRO
51
n
51
PRO
51
B
SER
52
n
52
SER
52
B
GLU
53
n
53
GLU
53
B
GLY
54
n
54
GLY
54
B
LEU
55
n
55
LEU
55
B
TYR
56
n
56
TYR
56
B
LEU
57
n
57
LEU
57
B
ILE
58
n
58
ILE
58
B
TYR
59
n
59
TYR
59
B
SER
60
n
60
SER
60
B
GLN
61
n
61
GLN
61
B
VAL
62
n
62
VAL
62
B
LEU
63
n
63
LEU
63
B
PHE
64
n
64
PHE
64
B
SER
65
n
65
SER
65
B
GLY
66
n
66
GLY
66
B
GLN
67
n
67
GLN
67
B
GLY
68
n
68
GLY
68
B
CYS
69
n
69
CYS
69
B
PRO
70
n
70
PRO
70
B
SER
71
n
71
SER
71
B
THR
72
n
72
THR
72
B
HIS
73
n
73
HIS
73
B
VAL
74
n
74
VAL
74
B
LEU
75
n
75
LEU
75
B
LEU
76
n
76
LEU
76
B
THR
77
n
77
THR
77
B
HIS
78
n
78
HIS
78
B
THR
79
n
79
THR
79
B
ILE
80
n
80
ILE
80
B
SER
81
n
81
SER
81
B
ARG
82
n
82
ARG
82
B
ILE
83
n
83
ILE
83
B
ALA
84
n
84
ALA
84
B
VAL
85
n
85
VAL
85
B
SER
86
n
86
SER
86
B
TYR
87
n
87
TYR
87
B
GLN
88
n
88
GLN
88
B
THR
89
n
89
THR
89
B
PRO
90
n
90
PRO
90
B
VAL
91
n
91
VAL
91
B
ASN
92
n
92
ASN
92
B
LEU
93
n
93
LEU
93
B
LEU
94
n
94
LEU
94
B
SER
95
n
95
SER
95
B
ALA
96
n
96
ALA
96
B
ILE
97
n
97
ILE
97
B
ARG
98
n
98
ARG
98
B
SER
99
n
99
SER
99
B
PRO
100
n
100
PRO
100
B
CYS
101
n
101
CYS
101
B
GLN
102
n
102
GLN
102
B
ARG
103
n
103
ARG
103
B
GLU
104
n
104
GLU
104
B
THR
105
n
105
THR
105
B
PRO
106
n
106
PRO
106
B
GLU
107
n
107
GLU
107
B
GLY
108
n
108
GLY
108
B
ALA
109
n
109
ALA
109
B
GLU
110
n
110
GLU
110
B
ALA
111
n
111
ALA
111
B
ASN
112
n
112
ASN
112
B
PRO
113
n
113
PRO
113
B
TRP
114
n
114
TRP
114
B
TYR
115
n
115
TYR
115
B
GLU
116
n
116
GLU
116
B
PRO
117
n
117
PRO
117
B
ILE
118
n
118
ILE
118
B
TYR
119
n
119
TYR
119
B
LEU
120
n
120
LEU
120
B
GLY
121
n
121
GLY
121
B
GLY
122
n
122
GLY
122
B
VAL
123
n
123
VAL
123
B
PHE
124
n
124
PHE
124
B
GLN
125
n
125
GLN
125
B
LEU
126
n
126
LEU
126
B
GLU
127
n
127
GLU
127
B
PRO
128
n
128
PRO
128
B
GLY
129
n
129
GLY
129
B
ASP
130
n
130
ASP
130
B
ARG
131
n
131
ARG
131
B
LEU
132
n
132
LEU
132
B
SER
133
n
133
SER
133
B
ALA
134
n
134
ALA
134
B
GLU
135
n
135
GLU
135
B
ILE
136
n
136
ILE
136
B
ASN
137
n
137
ASN
137
B
ARG
138
n
138
ARG
138
B
PRO
139
n
139
PRO
139
B
ASP
140
n
140
ASP
140
B
TYR
141
n
141
TYR
141
B
LEU
142
n
142
LEU
142
B
ASP
143
n
143
ASP
143
B
PHE
144
n
144
PHE
144
B
ALA
145
n
145
ALA
145
B
SER
146
n
146
SER
146
B
THR
147
n
147
THR
147
B
GLY
148
n
148
GLY
148
B
GLN
149
n
149
GLN
149
B
VAL
150
n
150
VAL
150
B
TYR
151
n
151
TYR
151
B
PHE
152
n
152
PHE
152
B
GLY
153
n
153
GLY
153
B
ILE
154
n
154
ILE
154
B
ILE
155
n
155
ILE
155
B
ALA
156
n
156
ALA
156
B
LEU
157
n
157
LEU
157
B
n
1
1
C
n
2
2
C
n
3
3
C
n
4
4
C
n
5
5
C
n
6
6
C
n
7
7
C
PRO
8
n
8
PRO
8
C
SER
9
n
9
SER
9
C
ASP
10
n
10
ASP
10
C
MET
11
n
11
MET
11
C
PRO
12
n
12
PRO
12
C
VAL
13
n
13
VAL
13
C
ALA
14
n
14
ALA
14
C
HIS
15
n
15
HIS
15
C
VAL
16
n
16
VAL
16
C
VAL
17
n
17
VAL
17
C
ALA
18
n
18
ALA
18
C
ASN
19
n
19
ASN
19
C
PRO
20
n
20
PRO
20
C
GLN
21
n
21
GLN
21
C
ALA
22
n
22
ALA
22
C
GLU
23
n
23
GLU
23
C
GLY
24
n
24
GLY
24
C
GLN
25
n
25
GLN
25
C
LEU
26
n
26
LEU
26
C
GLN
27
n
27
GLN
27
C
TRP
28
n
28
TRP
28
C
LYS
29
n
29
LYS
29
C
ASN
30
n
30
ASN
30
C
ALA
31
n
31
ALA
31
C
GLY
32
n
32
GLY
32
C
ALA
33
n
33
ALA
33
C
ASN
34
n
34
ASN
34
C
ALA
35
n
35
ALA
35
C
LEU
36
n
36
LEU
36
C
LEU
37
n
37
LEU
37
C
ALA
38
n
38
ALA
38
C
ASN
39
n
39
ASN
39
C
GLY
40
n
40
GLY
40
C
VAL
41
n
41
VAL
41
C
GLU
42
n
42
GLU
42
C
LEU
43
n
43
LEU
43
C
ARG
44
n
44
ARG
44
C
ASP
45
n
45
ASP
45
C
ASN
46
n
46
ASN
46
C
GLN
47
n
47
GLN
47
C
LEU
48
n
48
LEU
48
C
VAL
49
n
49
VAL
49
C
VAL
50
n
50
VAL
50
C
PRO
51
n
51
PRO
51
C
SER
52
n
52
SER
52
C
GLU
53
n
53
GLU
53
C
GLY
54
n
54
GLY
54
C
LEU
55
n
55
LEU
55
C
TYR
56
n
56
TYR
56
C
LEU
57
n
57
LEU
57
C
ILE
58
n
58
ILE
58
C
TYR
59
n
59
TYR
59
C
SER
60
n
60
SER
60
C
GLN
61
n
61
GLN
61
C
VAL
62
n
62
VAL
62
C
LEU
63
n
63
LEU
63
C
PHE
64
n
64
PHE
64
C
SER
65
n
65
SER
65
C
GLY
66
n
66
GLY
66
C
GLN
67
n
67
GLN
67
C
GLY
68
n
68
GLY
68
C
CYS
69
n
69
CYS
69
C
PRO
70
n
70
PRO
70
C
SER
71
n
71
SER
71
C
THR
72
n
72
THR
72
C
HIS
73
n
73
HIS
73
C
VAL
74
n
74
VAL
74
C
LEU
75
n
75
LEU
75
C
LEU
76
n
76
LEU
76
C
THR
77
n
77
THR
77
C
HIS
78
n
78
HIS
78
C
THR
79
n
79
THR
79
C
ILE
80
n
80
ILE
80
C
SER
81
n
81
SER
81
C
ARG
82
n
82
ARG
82
C
ILE
83
n
83
ILE
83
C
ALA
84
n
84
ALA
84
C
VAL
85
n
85
VAL
85
C
SER
86
n
86
SER
86
C
TYR
87
n
87
TYR
87
C
GLN
88
n
88
GLN
88
C
THR
89
n
89
THR
89
C
PRO
90
n
90
PRO
90
C
VAL
91
n
91
VAL
91
C
ASN
92
n
92
ASN
92
C
LEU
93
n
93
LEU
93
C
LEU
94
n
94
LEU
94
C
SER
95
n
95
SER
95
C
ALA
96
n
96
ALA
96
C
ILE
97
n
97
ILE
97
C
ARG
98
n
98
ARG
98
C
SER
99
n
99
SER
99
C
PRO
100
n
100
PRO
100
C
CYS
101
n
101
CYS
101
C
GLN
102
n
102
GLN
102
C
n
103
103
C
n
104
104
C
n
105
105
C
n
106
106
C
n
107
107
C
n
108
108
C
n
109
109
C
n
110
110
C
ALA
111
n
111
ALA
111
C
ASN
112
n
112
ASN
112
C
PRO
113
n
113
PRO
113
C
TRP
114
n
114
TRP
114
C
TYR
115
n
115
TYR
115
C
GLU
116
n
116
GLU
116
C
PRO
117
n
117
PRO
117
C
ILE
118
n
118
ILE
118
C
TYR
119
n
119
TYR
119
C
LEU
120
n
120
LEU
120
C
GLY
121
n
121
GLY
121
C
GLY
122
n
122
GLY
122
C
VAL
123
n
123
VAL
123
C
PHE
124
n
124
PHE
124
C
GLN
125
n
125
GLN
125
C
LEU
126
n
126
LEU
126
C
GLU
127
n
127
GLU
127
C
PRO
128
n
128
PRO
128
C
GLY
129
n
129
GLY
129
C
ASP
130
n
130
ASP
130
C
ARG
131
n
131
ARG
131
C
LEU
132
n
132
LEU
132
C
SER
133
n
133
SER
133
C
ALA
134
n
134
ALA
134
C
GLU
135
n
135
GLU
135
C
ILE
136
n
136
ILE
136
C
ASN
137
n
137
ASN
137
C
ARG
138
n
138
ARG
138
C
PRO
139
n
139
PRO
139
C
ASP
140
n
140
ASP
140
C
TYR
141
n
141
TYR
141
C
LEU
142
n
142
LEU
142
C
ASP
143
n
143
ASP
143
C
PHE
144
n
144
PHE
144
C
ALA
145
n
145
ALA
145
C
SER
146
n
146
SER
146
C
THR
147
n
147
THR
147
C
GLY
148
n
148
GLY
148
C
GLN
149
n
149
GLN
149
C
VAL
150
n
150
VAL
150
C
TYR
151
n
151
TYR
151
C
PHE
152
n
152
PHE
152
C
GLY
153
n
153
GLY
153
C
ILE
154
n
154
ILE
154
C
ILE
155
n
155
ILE
155
C
ALA
156
n
156
ALA
156
C
LEU
157
n
157
LEU
157
C
7.2741
-0.7318
0.4993
5.0031
-0.2757
2.1215
0.1049
0.4883
-0.7046
-0.4488
0.0210
-0.1429
0.0590
0.0964
-0.1259
-0.0303
-0.0072
0.0522
-0.1278
-0.0744
0.6965
refined
0.5060
19.7770
-2.4510
X-RAY DIFFRACTION
8.4563
0.3446
2.6144
2.5695
0.3406
2.5998
-0.0378
-0.6922
-0.7246
0.2925
0.0528
-0.1898
0.1934
-0.0944
-0.0150
-0.0391
0.0665
0.0867
0.0557
0.1508
0.6702
refined
-8.0410
22.0520
17.3240
X-RAY DIFFRACTION
4.6971
0.0598
0.0282
2.8298
-0.4122
2.2781
-0.0870
-0.1554
0.3628
0.0194
0.0632
-0.1324
-0.1994
-0.0371
0.0238
-0.0377
0.0347
-0.0158
-0.0837
-0.0348
0.6419
refined
-3.9240
39.8210
5.1670
X-RAY DIFFRACTION
A
8
A
157
X-RAY DIFFRACTION
1
B
6
B
157
X-RAY DIFFRACTION
2
C
8
C
157
X-RAY DIFFRACTION
3
author_and_software_defined_assembly
PISA
3
trimeric
7180
-38
17010
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
LYS
29
A
O
LYS
29
A
N
VAL
17
A
N
VAL
17
A
N
VAL
13
A
N
VAL
13
A
O
ALA
38
A
O
ALA
38
A
O
LYS
29
A
O
LYS
29
A
N
VAL
17
A
N
VAL
17
A
N
VAL
16
A
N
VAL
16
A
O
PHE
152
A
O
PHE
152
A
O
LEU
157
A
O
LEU
157
A
N
LEU
55
A
N
LEU
55
A
N
SER
60
A
N
SER
60
A
O
LEU
120
A
O
LEU
120
A
N
ARG
44
A
N
ARG
44
A
O
GLN
47
A
O
GLN
47
A
N
LEU
48
A
N
LEU
48
A
O
LEU
132
A
O
LEU
132
A
O
ARG
131
A
O
ARG
131
A
N
ILE
83
A
N
ILE
83
A
N
ILE
80
A
N
ILE
80
A
O
LEU
93
A
O
LEU
93
B
O
LYS
29
B
O
LYS
29
B
N
VAL
17
B
N
VAL
17
B
N
HIS
15
B
N
HIS
15
B
O
LEU
36
B
O
LEU
36
B
O
LYS
29
B
O
LYS
29
B
N
VAL
17
B
N
VAL
17
B
N
VAL
16
B
N
VAL
16
B
O
PHE
152
B
O
PHE
152
B
O
LEU
157
B
O
LEU
157
B
N
LEU
55
B
N
LEU
55
B
N
ILE
58
B
N
ILE
58
B
O
GLY
122
B
O
GLY
122
B
N
GLU
42
B
N
GLU
42
B
O
VAL
49
B
O
VAL
49
B
N
LEU
48
B
N
LEU
48
B
O
LEU
132
B
O
LEU
132
B
O
ARG
131
B
O
ARG
131
B
N
ILE
83
B
N
ILE
83
B
N
LEU
76
B
N
LEU
76
B
O
ARG
98
B
O
ARG
98
C
O
LYS
29
C
O
LYS
29
C
N
VAL
17
C
N
VAL
17
C
N
VAL
13
C
N
VAL
13
C
O
ALA
38
C
O
ALA
38
C
O
LYS
29
C
O
LYS
29
C
N
VAL
17
C
N
VAL
17
C
N
VAL
16
C
N
VAL
16
C
O
PHE
152
C
O
PHE
152
C
O
TYR
151
C
O
TYR
151
C
N
GLN
61
C
N
GLN
61
C
N
TYR
56
C
N
TYR
56
C
O
PHE
124
C
O
PHE
124
C
N
ARG
44
C
N
ARG
44
C
O
GLN
47
C
O
GLN
47
C
N
LEU
48
C
N
LEU
48
C
O
LEU
132
C
O
LEU
132
C
O
GLU
135
C
O
GLU
135
C
N
THR
79
C
N
THR
79
C
N
LEU
76
C
N
LEU
76
C
O
ARG
98
C
O
ARG
98
1
A
VAL
1
A
VAL
1
1
Y
1
A
ARG
2
A
ARG
2
1
Y
1
A
SER
3
A
SER
3
1
Y
1
A
SER
4
A
SER
4
1
Y
1
A
SER
5
A
SER
5
1
Y
1
A
ARG
6
A
ARG
6
1
Y
1
A
THR
7
A
THR
7
1
Y
1
A
ARG
103
A
ARG
103
1
Y
1
A
GLU
104
A
GLU
104
1
Y
1
A
THR
105
A
THR
105
1
Y
1
A
PRO
106
A
PRO
106
1
Y
1
A
GLU
107
A
GLU
107
1
Y
1
A
GLY
108
A
GLY
108
1
Y
1
A
ALA
109
A
ALA
109
1
Y
1
A
GLU
110
A
GLU
110
1
Y
1
B
VAL
1
B
VAL
1
1
Y
1
B
ARG
2
B
ARG
2
1
Y
1
B
SER
3
B
SER
3
1
Y
1
B
SER
4
B
SER
4
1
Y
1
B
SER
5
B
SER
5
1
Y
1
B
ARG
6
B
ARG
6
1
Y
1
C
VAL
1
C
VAL
1
1
Y
1
C
ARG
2
C
ARG
2
1
Y
1
C
SER
3
C
SER
3
1
Y
1
C
SER
4
C
SER
4
1
Y
1
C
SER
5
C
SER
5
1
Y
1
C
ARG
6
C
ARG
6
1
Y
1
C
THR
7
C
THR
7
1
Y
1
C
ARG
103
C
ARG
103
1
Y
1
C
GLU
104
C
GLU
104
1
Y
1
C
THR
105
C
THR
105
1
Y
1
C
PRO
106
C
PRO
106
1
Y
1
C
GLU
107
C
GLU
107
1
Y
1
C
GLY
108
C
GLY
108
1
Y
1
C
ALA
109
C
ALA
109
1
Y
1
C
GLU
110
C
GLU
110
1
Y
1
A
SER
9
-66.59
68.73
1
A
THR
89
-161.77
105.84
1
B
GLN
21
-140.15
-38.37
1
B
GLU
23
-23.42
-40.34
1
B
GLU
110
-39.01
122.27
1
B
PHE
144
55.61
-147.70
1
B
THR
147
-39.72
140.06
1
C
SER
9
-135.11
-151.14
1
C
LEU
37
-179.33
87.39
1
C
ASP
45
35.74
46.69
protein_rep.param
protein.top
water_rep.param
water.top
gol.param
gol.top
19.696
1.17
0.59
0.00
1.17
0.00
-1.76
0.945
0.900
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.27222
0.008
0.20146
0.20881
2.50
25.67
1373
12060
10.2
97.07
30.501
0.329
RANDOM
LIKELY RESIDUAL
2548521.65
0.000000
1
RESTRAINED
THROUGHOUT
0.0
MOLECULAR REPLACEMENT
0.378
0.80
0.80
1.40
PDB ENTRY 1TNF
MAXIMUM LIKELIHOOD
MASK
106.48
0.1
0.43
0.31
5.00
0.62
0.44
2.50
25.67
59
3403
6
0
3338
0.009
0.022
3429
1.271
1.964
4696
6.788
5.000
430
38.485
24.805
154
19.605
15.000
500
21.308
15.000
16
0.089
0.200
530
0.004
0.020
2666
0.201
0.200
1488
0.309
0.200
2260
0.157
0.200
141
0.199
0.200
63
0.191
0.200
8
0.425
1.500
2219
0.766
2.000
3506
0.938
3.000
1374
1.483
4.500
1190
0.406
0.029
0.318
2.563
67
798
20
9.5
84.23
19.6
2.5
50
2ZJC
13445
0.103
1
28.9
99.9
0.530
2.5
2.59
4.20
1173
1
85.2
refinement
REFMAC
5.2.0019
data collection
HKL-2000
data reduction
HKL-2000
data scaling
HKL-2000
phasing
AMoRE
TNFR1 selectve TNF mutant; R1-6
1
N
N
1
N
N
1
N
N
2
N
N
3
N
N
3
N
N
3
N
N
A
ARG
138
A
ARG
138
HELX_P
A
LEU
142
A
LEU
142
5
1
5
C
ARG
138
C
ARG
138
HELX_P
C
LEU
142
C
LEU
142
5
2
5
disulf
2.040
A
CYS
69
A
SG
CYS
69
1_555
A
CYS
101
A
SG
CYS
101
1_555
disulf
2.031
B
CYS
69
B
SG
CYS
69
1_555
B
CYS
101
B
SG
CYS
101
1_555
disulf
2.011
C
CYS
69
C
SG
CYS
69
1_555
C
CYS
101
C
SG
CYS
101
1_555
CYTOKINE
phage display system, TNFR1 selectivity, TNF, agonist, mutant, Cytokine, Lipoprotein, Membrane, Myristate, Phosphoprotein, Secreted, Signal-anchor, Transmembrane
B
PHE
144
B
PHE
144
1
B
ALA
145
B
ALA
145
-29.33
TNFA_HUMAN
UNP
1
77
P01375
VRSSSRTPSDKPVAHVVANPQAEGQLQWLNRRANALLANGVELRDNQLVVPSEGLYLIYSQVLFKGQGCPSTHVLLTHTI
SRIAVSYQTKVNLLSAIKSPCQRETPEGAEAKPWYEPIYLGGVFQLEKGDRLSAEINRPDYLDFAESGQVYFGIIAL
77
233
2ZJC
1
157
P01375
A
1
1
157
77
233
2ZJC
1
157
P01375
B
1
1
157
77
233
2ZJC
1
157
P01375
C
1
1
157
1
LYS
engineered mutation
MET
11
2ZJC
A
P01375
UNP
87
11
1
LEU
engineered mutation
LYS
29
2ZJC
A
P01375
UNP
105
29
1
ARG
engineered mutation
ALA
31
2ZJC
A
P01375
UNP
107
31
1
ARG
engineered mutation
GLY
32
2ZJC
A
P01375
UNP
108
32
1
LYS
engineered mutation
SER
65
2ZJC
A
P01375
UNP
141
65
1
LYS
engineered mutation
PRO
90
2ZJC
A
P01375
UNP
166
90
1
LYS
engineered mutation
ARG
98
2ZJC
A
P01375
UNP
174
98
1
LYS
engineered mutation
ASN
112
2ZJC
A
P01375
UNP
188
112
1
LYS
engineered mutation
PRO
128
2ZJC
A
P01375
UNP
204
128
1
GLU
engineered mutation
SER
146
2ZJC
A
P01375
UNP
222
146
1
SER
engineered mutation
THR
147
2ZJC
A
P01375
UNP
223
147
2
LYS
engineered mutation
MET
11
2ZJC
B
P01375
UNP
87
11
2
LEU
engineered mutation
LYS
29
2ZJC
B
P01375
UNP
105
29
2
ARG
engineered mutation
ALA
31
2ZJC
B
P01375
UNP
107
31
2
ARG
engineered mutation
GLY
32
2ZJC
B
P01375
UNP
108
32
2
LYS
engineered mutation
SER
65
2ZJC
B
P01375
UNP
141
65
2
LYS
engineered mutation
PRO
90
2ZJC
B
P01375
UNP
166
90
2
LYS
engineered mutation
ARG
98
2ZJC
B
P01375
UNP
174
98
2
LYS
engineered mutation
ASN
112
2ZJC
B
P01375
UNP
188
112
2
LYS
engineered mutation
PRO
128
2ZJC
B
P01375
UNP
204
128
2
GLU
engineered mutation
SER
146
2ZJC
B
P01375
UNP
222
146
2
SER
engineered mutation
THR
147
2ZJC
B
P01375
UNP
223
147
3
LYS
engineered mutation
MET
11
2ZJC
C
P01375
UNP
87
11
3
LEU
engineered mutation
LYS
29
2ZJC
C
P01375
UNP
105
29
3
ARG
engineered mutation
ALA
31
2ZJC
C
P01375
UNP
107
31
3
ARG
engineered mutation
GLY
32
2ZJC
C
P01375
UNP
108
32
3
LYS
engineered mutation
SER
65
2ZJC
C
P01375
UNP
141
65
3
LYS
engineered mutation
PRO
90
2ZJC
C
P01375
UNP
166
90
3
LYS
engineered mutation
ARG
98
2ZJC
C
P01375
UNP
174
98
3
LYS
engineered mutation
ASN
112
2ZJC
C
P01375
UNP
188
112
3
LYS
engineered mutation
PRO
128
2ZJC
C
P01375
UNP
204
128
3
GLU
engineered mutation
SER
146
2ZJC
C
P01375
UNP
222
146
3
SER
engineered mutation
THR
147
2ZJC
C
P01375
UNP
223
147
3
5
5
3
5
5
3
5
5
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
TRP
28
A
TRP
28
A
LYS
29
A
LYS
29
A
VAL
13
A
VAL
13
A
ALA
18
A
ALA
18
A
LEU
36
A
LEU
36
A
ALA
38
A
ALA
38
A
TRP
28
A
TRP
28
A
LYS
29
A
LYS
29
A
VAL
13
A
VAL
13
A
ALA
18
A
ALA
18
A
TYR
151
A
TYR
151
A
LEU
157
A
LEU
157
A
GLY
54
A
GLY
54
A
GLY
66
A
GLY
66
A
TRP
114
A
TRP
114
A
LEU
126
A
LEU
126
A
GLU
42
A
GLU
42
A
ARG
44
A
ARG
44
A
GLN
47
A
GLN
47
A
VAL
49
A
VAL
49
A
ARG
131
A
ARG
131
A
ILE
136
A
ILE
136
A
LEU
76
A
LEU
76
A
ILE
83
A
ILE
83
A
VAL
91
A
VAL
91
A
ARG
98
A
ARG
98
B
GLN
27
B
GLN
27
B
LYS
29
B
LYS
29
B
VAL
13
B
VAL
13
B
ASN
19
B
ASN
19
B
LEU
36
B
LEU
36
B
ALA
38
B
ALA
38
B
GLN
27
B
GLN
27
B
LYS
29
B
LYS
29
B
VAL
13
B
VAL
13
B
ASN
19
B
ASN
19
B
TYR
151
B
TYR
151
B
LEU
157
B
LEU
157
B
GLY
54
B
GLY
54
B
GLN
67
B
GLN
67
B
PRO
113
B
PRO
113
B
LEU
126
B
LEU
126
B
GLU
42
B
GLU
42
B
ARG
44
B
ARG
44
B
GLN
47
B
GLN
47
B
VAL
49
B
VAL
49
B
ARG
131
B
ARG
131
B
ILE
136
B
ILE
136
B
LEU
76
B
LEU
76
B
ILE
83
B
ILE
83
B
VAL
91
B
VAL
91
B
ARG
98
B
ARG
98
C
TRP
28
C
TRP
28
C
LYS
29
C
LYS
29
C
VAL
13
C
VAL
13
C
ALA
18
C
ALA
18
C
LEU
36
C
LEU
36
C
ALA
38
C
ALA
38
C
TRP
28
C
TRP
28
C
LYS
29
C
LYS
29
C
VAL
13
C
VAL
13
C
ALA
18
C
ALA
18
C
TYR
151
C
TYR
151
C
ALA
156
C
ALA
156
C
GLY
54
C
GLY
54
C
GLY
66
C
GLY
66
C
TRP
114
C
TRP
114
C
LEU
126
C
LEU
126
C
GLU
42
C
GLU
42
C
ARG
44
C
ARG
44
C
GLN
47
C
GLN
47
C
VAL
49
C
VAL
49
C
ARG
131
C
ARG
131
C
ILE
136
C
ILE
136
C
LEU
76
C
LEU
76
C
ILE
83
C
ILE
83
C
VAL
91
C
VAL
91
C
ARG
98
C
ARG
98
BINDING SITE FOR RESIDUE GOL B 158
B
GOL
158
Software
7
A
PRO
117
A
PRO
117
7
1_555
A
ILE
118
A
ILE
118
7
1_555
A
TYR
119
A
TYR
119
7
1_555
B
ARG
98
B
ARG
98
7
1_555
B
ILE
118
B
ILE
118
7
1_555
B
TYR
119
B
TYR
119
7
1_555
C
ARG
98
C
ARG
98
7
1_555
146
H 3