0.007974
0.004604
0.000000
0.000000
0.009208
0.000000
0.000000
0.000000
0.007139
0.00000
0.00000
0.00000
Harrus, D.
Ahmed-El-Sayed, N.
Simister, P.C.
Miller, S.
Triconnet, M.
Hagedorn, C.H.
Mahias, K.
Rey, F.A.
Astier-Gin, T.
Bressanelli, S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
125.400
125.400
140.080
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
O
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
R
C
N
309
N
O
N
310
N
C
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
N
N
322
S
C
N
323
N
C
N
324
N
O
N
325
N
C
Y
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
N
Y
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
N
335
N
O
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
N
359
N
O
N
360
N
O
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
N
N
373
S
C
N
374
N
C
N
375
N
O
N
376
N
C
N
377
N
C
N
378
N
C
N
379
N
O
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
doub
N
329
N
sing
Y
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
Y
345
N
doub
Y
346
N
sing
Y
347
N
sing
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
doub
N
352
N
sing
Y
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
doub
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
285
32906
32918
10.1074/JBC.M110.151316
20729191
Further Insights Into the Roles of GTP and the C- Terminus of the Hepatitis C Virus Polymerase in the Initiation of RNA Synthesis
2010
10.2210/pdb2xhw/pdb
pdb_00002xhw
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2006-06-03
MARMOSAIC 225 mm CCD
SINGLE WAVELENGTH
M
x-ray
1
1.00790
1.0
SLS
1.00790
SYNCHROTRON
SLS
64598.988
RNA-directed RNA polymerase
2.7.7.48
CATALYTIC DOMAIN, RESIDUES 2420-2989
1
man
polymer
18.015
water
139
nat
water
NS5B,p68
no
no
ASMSYTWTGALITPCAAEESKLPINPLSNSLLRHHNMVYATTSRSASLRQKKVTFDRLQVLDDHYRDVLKEMKAKASTVK
AKLLSIEEACKLTPPHSAKSKFGYGAKDVRNLSSRAVNHIRSVWEDLLEDTETPIDTTIMAKSEVFCVQPEKGGRKPARL
IVFPDLGVRVCEKMALYDVVSTLPQAVMGSSYGFQYSPKQRVEFLVNTWKSKKCPMGFSYDTRCFDSTVTESDIRVEESI
YQCCDLAPEARQAIRSLTERLYIGGPLTNSKGQNCGYRRCRASGVLTTSCGNTLTCYLKATAACRAAKLQDCTMLVNGDD
LVVICESAGTQEDAAALRAFTEAMTRYSAPPGDPPQPEYDLELITSCSSNVSVAHDASGKRVYYLTRDPTTPLARAAWET
ARHTPINSWLGNIIMYAPTLWARMILMTHFFSILLAQEQLEKALDCQIYGACYSIEPLDLPQIIERLHGLSAFTLHSYSP
GEINRVASCLRKLGVPPLRTWRHRARSVRAKLLSQGGRAATCGRYLFNWAVRTKLKLTPIPAASQLDLSGWFVAGYSGGD
IYHSLSRARPRLEHHHHHH
ASMSYTWTGALITPCAAEESKLPINPLSNSLLRHHNMVYATTSRSASLRQKKVTFDRLQVLDDHYRDVLKEMKAKASTVK
AKLLSIEEACKLTPPHSAKSKFGYGAKDVRNLSSRAVNHIRSVWEDLLEDTETPIDTTIMAKSEVFCVQPEKGGRKPARL
IVFPDLGVRVCEKMALYDVVSTLPQAVMGSSYGFQYSPKQRVEFLVNTWKSKKCPMGFSYDTRCFDSTVTESDIRVEESI
YQCCDLAPEARQAIRSLTERLYIGGPLTNSKGQNCGYRRCRASGVLTTSCGNTLTCYLKATAACRAAKLQDCTMLVNGDD
LVVICESAGTQEDAAALRAFTEAMTRYSAPPGDPPQPEYDLELITSCSSNVSVAHDASGKRVYYLTRDPTTPLARAAWET
ARHTPINSWLGNIIMYAPTLWARMILMTHFFSILLAQEQLEKALDCQIYGACYSIEPLDLPQIIERLHGLSAFTLHSYSP
GEINRVASCLRKLGVPPLRTWRHRARSVRAKLLSQGGRAATCGRYLFNWAVRTKLKLTPIPAASQLDLSGWFVAGYSGGD
IYHSLSRARPRLEHHHHHH
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
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n
n
n
n
n
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n
n
n
n
n
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n
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n
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n
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n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
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n
n
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n
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n
n
n
n
n
n
n
n
n
n
n
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n
n
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n
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n
n
n
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n
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n
n
n
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n
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n
n
n
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n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
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n
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n
n
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n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
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n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
HCV
HC-J4
sample
1
579
420174
Hepatitis C virus genotype 1b (strain HC-J4)
469008
ESCHERICHIA COLI
BL21(DE3)
Biological sequence
PET23A
1
4.93
75.06
NONE
7
2-6% PEG 3350, 0.2 M NAF, PH 7
chem_comp_atom
chem_comp_bond
citation
database_2
pdbx_database_status
pdbx_initial_refinement_model
entity
entity_name_com
entity_src_gen
struct_ref
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Other
Refinement description
Database references
Source and taxonomy
Structure summary
1
0
2010-08-04
1
1
2011-05-08
1
2
2011-07-13
1
3
2023-12-20
1
4
2024-03-27
_citation.page_last
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_sf
_entity.pdbx_description
_entity_name_com.name
_entity_src_gen.gene_src_common_name
_entity_src_gen.gene_src_strain
_entity_src_gen.pdbx_beg_seq_num
_entity_src_gen.pdbx_end_seq_num
_entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id
_entity_src_gen.pdbx_gene_src_scientific_name
_entity_src_gen.pdbx_seq_type
_struct_ref.pdbx_align_begin
_struct_ref.pdbx_seq_one_letter_code
HCV-J4 NS5B POLYMERASE ORTHORHOMBIC CRYSTAL FORM
HC-J4 RNA POLYMERASE APO-FORM
TWO HEPATITIS C VIRUS NS3 HELICASE DOMAINS COMPLEXED WITHTHE SAME STRAND OF DNA
HC-J4 RNA POLYMERASE COMPLEXED WITH UTP
HC-J4 RNA POLYMERASE COMPLEXED WITH SHORT RNA TEMPLATESTRAND
HCV-J4 NS5B POLYMERASE POINT MUTANT ORTHORHOMBIC CRYSTAL FORM
PDBE
Y
PDBE
2010-06-21
REL
REL
HOH
water
1NB4
PDB ENTRY 1NB4
PDB
experimental model
HOH
2001
2
HOH
HOH
2001
A
HOH
2002
2
HOH
HOH
2002
A
HOH
2003
2
HOH
HOH
2003
A
HOH
2004
2
HOH
HOH
2004
A
HOH
2005
2
HOH
HOH
2005
A
HOH
2006
2
HOH
HOH
2006
A
HOH
2007
2
HOH
HOH
2007
A
HOH
2008
2
HOH
HOH
2008
A
HOH
2009
2
HOH
HOH
2009
A
HOH
2010
2
HOH
HOH
2010
A
HOH
2011
2
HOH
HOH
2011
A
HOH
2012
2
HOH
HOH
2012
A
HOH
2013
2
HOH
HOH
2013
A
HOH
2014
2
HOH
HOH
2014
A
HOH
2015
2
HOH
HOH
2015
A
HOH
2016
2
HOH
HOH
2016
A
HOH
2017
2
HOH
HOH
2017
A
HOH
2018
2
HOH
HOH
2018
A
HOH
2019
2
HOH
HOH
2019
A
HOH
2020
2
HOH
HOH
2020
A
HOH
2021
2
HOH
HOH
2021
A
HOH
2022
2
HOH
HOH
2022
A
HOH
2023
2
HOH
HOH
2023
A
HOH
2024
2
HOH
HOH
2024
A
HOH
2025
2
HOH
HOH
2025
A
HOH
2026
2
HOH
HOH
2026
A
HOH
2027
2
HOH
HOH
2027
A
HOH
2028
2
HOH
HOH
2028
A
HOH
2029
2
HOH
HOH
2029
A
HOH
2030
2
HOH
HOH
2030
A
HOH
2031
2
HOH
HOH
2031
A
HOH
2032
2
HOH
HOH
2032
A
HOH
2033
2
HOH
HOH
2033
A
HOH
2034
2
HOH
HOH
2034
A
HOH
2035
2
HOH
HOH
2035
A
HOH
2036
2
HOH
HOH
2036
A
HOH
2037
2
HOH
HOH
2037
A
HOH
2038
2
HOH
HOH
2038
A
HOH
2039
2
HOH
HOH
2039
A
HOH
2040
2
HOH
HOH
2040
A
HOH
2041
2
HOH
HOH
2041
A
HOH
2042
2
HOH
HOH
2042
A
HOH
2043
2
HOH
HOH
2043
A
HOH
2044
2
HOH
HOH
2044
A
HOH
2045
2
HOH
HOH
2045
A
HOH
2046
2
HOH
HOH
2046
A
HOH
2047
2
HOH
HOH
2047
A
HOH
2048
2
HOH
HOH
2048
A
HOH
2049
2
HOH
HOH
2049
A
HOH
2050
2
HOH
HOH
2050
A
HOH
2051
2
HOH
HOH
2051
A
HOH
2052
2
HOH
HOH
2052
A
HOH
2053
2
HOH
HOH
2053
A
HOH
2054
2
HOH
HOH
2054
A
HOH
2055
2
HOH
HOH
2055
A
HOH
2056
2
HOH
HOH
2056
A
HOH
2057
2
HOH
HOH
2057
A
HOH
2058
2
HOH
HOH
2058
A
HOH
2059
2
HOH
HOH
2059
A
HOH
2060
2
HOH
HOH
2060
A
HOH
2061
2
HOH
HOH
2061
A
HOH
2062
2
HOH
HOH
2062
A
HOH
2063
2
HOH
HOH
2063
A
HOH
2064
2
HOH
HOH
2064
A
HOH
2065
2
HOH
HOH
2065
A
HOH
2066
2
HOH
HOH
2066
A
HOH
2067
2
HOH
HOH
2067
A
HOH
2068
2
HOH
HOH
2068
A
HOH
2069
2
HOH
HOH
2069
A
HOH
2070
2
HOH
HOH
2070
A
HOH
2071
2
HOH
HOH
2071
A
HOH
2072
2
HOH
HOH
2072
A
HOH
2073
2
HOH
HOH
2073
A
HOH
2074
2
HOH
HOH
2074
A
HOH
2075
2
HOH
HOH
2075
A
HOH
2076
2
HOH
HOH
2076
A
HOH
2077
2
HOH
HOH
2077
A
HOH
2078
2
HOH
HOH
2078
A
HOH
2079
2
HOH
HOH
2079
A
HOH
2080
2
HOH
HOH
2080
A
HOH
2081
2
HOH
HOH
2081
A
HOH
2082
2
HOH
HOH
2082
A
HOH
2083
2
HOH
HOH
2083
A
HOH
2084
2
HOH
HOH
2084
A
HOH
2085
2
HOH
HOH
2085
A
HOH
2086
2
HOH
HOH
2086
A
HOH
2087
2
HOH
HOH
2087
A
HOH
2088
2
HOH
HOH
2088
A
HOH
2089
2
HOH
HOH
2089
A
HOH
2090
2
HOH
HOH
2090
A
HOH
2091
2
HOH
HOH
2091
A
HOH
2092
2
HOH
HOH
2092
A
HOH
2093
2
HOH
HOH
2093
A
HOH
2094
2
HOH
HOH
2094
A
HOH
2095
2
HOH
HOH
2095
A
HOH
2096
2
HOH
HOH
2096
A
HOH
2097
2
HOH
HOH
2097
A
HOH
2098
2
HOH
HOH
2098
A
HOH
2099
2
HOH
HOH
2099
A
HOH
2100
2
HOH
HOH
2100
A
HOH
2101
2
HOH
HOH
2101
A
HOH
2102
2
HOH
HOH
2102
A
HOH
2103
2
HOH
HOH
2103
A
HOH
2104
2
HOH
HOH
2104
A
HOH
2105
2
HOH
HOH
2105
A
HOH
2106
2
HOH
HOH
2106
A
HOH
2107
2
HOH
HOH
2107
A
HOH
2108
2
HOH
HOH
2108
A
HOH
2109
2
HOH
HOH
2109
A
HOH
2110
2
HOH
HOH
2110
A
HOH
2111
2
HOH
HOH
2111
A
HOH
2112
2
HOH
HOH
2112
A
HOH
2113
2
HOH
HOH
2113
A
HOH
2114
2
HOH
HOH
2114
A
HOH
2115
2
HOH
HOH
2115
A
HOH
2116
2
HOH
HOH
2116
A
HOH
2117
2
HOH
HOH
2117
A
HOH
2118
2
HOH
HOH
2118
A
HOH
2119
2
HOH
HOH
2119
A
HOH
2120
2
HOH
HOH
2120
A
HOH
2121
2
HOH
HOH
2121
A
HOH
2122
2
HOH
HOH
2122
A
HOH
2123
2
HOH
HOH
2123
A
HOH
2124
2
HOH
HOH
2124
A
HOH
2125
2
HOH
HOH
2125
A
HOH
2126
2
HOH
HOH
2126
A
HOH
2127
2
HOH
HOH
2127
A
HOH
2128
2
HOH
HOH
2128
A
HOH
2129
2
HOH
HOH
2129
A
HOH
2130
2
HOH
HOH
2130
A
HOH
2131
2
HOH
HOH
2131
A
HOH
2132
2
HOH
HOH
2132
A
HOH
2133
2
HOH
HOH
2133
A
HOH
2134
2
HOH
HOH
2134
A
HOH
2135
2
HOH
HOH
2135
A
HOH
2136
2
HOH
HOH
2136
A
HOH
2137
2
HOH
HOH
2137
A
HOH
2138
2
HOH
HOH
2138
A
HOH
2139
2
HOH
HOH
2139
A
n
1
0
A
SER
1
n
2
SER
1
A
MET
2
n
3
MET
2
A
SER
3
n
4
SER
3
A
TYR
4
n
5
TYR
4
A
THR
5
n
6
THR
5
A
TRP
6
n
7
TRP
6
A
THR
7
n
8
THR
7
A
GLY
8
n
9
GLY
8
A
ALA
9
n
10
ALA
9
A
LEU
10
n
11
LEU
10
A
ILE
11
n
12
ILE
11
A
THR
12
n
13
THR
12
A
PRO
13
n
14
PRO
13
A
CYS
14
n
15
CYS
14
A
ALA
15
n
16
ALA
15
A
ALA
16
n
17
ALA
16
A
GLU
17
n
18
GLU
17
A
GLU
18
n
19
GLU
18
A
SER
19
n
20
SER
19
A
LYS
20
n
21
LYS
20
A
LEU
21
n
22
LEU
21
A
PRO
22
n
23
PRO
22
A
ILE
23
n
24
ILE
23
A
ASN
24
n
25
ASN
24
A
PRO
25
n
26
PRO
25
A
LEU
26
n
27
LEU
26
A
SER
27
n
28
SER
27
A
ASN
28
n
29
ASN
28
A
SER
29
n
30
SER
29
A
LEU
30
n
31
LEU
30
A
LEU
31
n
32
LEU
31
A
ARG
32
n
33
ARG
32
A
HIS
33
n
34
HIS
33
A
HIS
34
n
35
HIS
34
A
ASN
35
n
36
ASN
35
A
MET
36
n
37
MET
36
A
VAL
37
n
38
VAL
37
A
TYR
38
n
39
TYR
38
A
ALA
39
n
40
ALA
39
A
THR
40
n
41
THR
40
A
THR
41
n
42
THR
41
A
SER
42
n
43
SER
42
A
ARG
43
n
44
ARG
43
A
SER
44
n
45
SER
44
A
ALA
45
n
46
ALA
45
A
SER
46
n
47
SER
46
A
LEU
47
n
48
LEU
47
A
ARG
48
n
49
ARG
48
A
GLN
49
n
50
GLN
49
A
LYS
50
n
51
LYS
50
A
LYS
51
n
52
LYS
51
A
VAL
52
n
53
VAL
52
A
THR
53
n
54
THR
53
A
PHE
54
n
55
PHE
54
A
ASP
55
n
56
ASP
55
A
ARG
56
n
57
ARG
56
A
LEU
57
n
58
LEU
57
A
GLN
58
n
59
GLN
58
A
VAL
59
n
60
VAL
59
A
LEU
60
n
61
LEU
60
A
ASP
61
n
62
ASP
61
A
ASP
62
n
63
ASP
62
A
HIS
63
n
64
HIS
63
A
TYR
64
n
65
TYR
64
A
ARG
65
n
66
ARG
65
A
ASP
66
n
67
ASP
66
A
VAL
67
n
68
VAL
67
A
LEU
68
n
69
LEU
68
A
LYS
69
n
70
LYS
69
A
GLU
70
n
71
GLU
70
A
MET
71
n
72
MET
71
A
LYS
72
n
73
LYS
72
A
ALA
73
n
74
ALA
73
A
LYS
74
n
75
LYS
74
A
ALA
75
n
76
ALA
75
A
SER
76
n
77
SER
76
A
THR
77
n
78
THR
77
A
VAL
78
n
79
VAL
78
A
LYS
79
n
80
LYS
79
A
ALA
80
n
81
ALA
80
A
LYS
81
n
82
LYS
81
A
LEU
82
n
83
LEU
82
A
LEU
83
n
84
LEU
83
A
SER
84
n
85
SER
84
A
ILE
85
n
86
ILE
85
A
GLU
86
n
87
GLU
86
A
GLU
87
n
88
GLU
87
A
ALA
88
n
89
ALA
88
A
CYS
89
n
90
CYS
89
A
LYS
90
n
91
LYS
90
A
LEU
91
n
92
LEU
91
A
THR
92
n
93
THR
92
A
PRO
93
n
94
PRO
93
A
PRO
94
n
95
PRO
94
A
HIS
95
n
96
HIS
95
A
SER
96
n
97
SER
96
A
ALA
97
n
98
ALA
97
A
LYS
98
n
99
LYS
98
A
SER
99
n
100
SER
99
A
LYS
100
n
101
LYS
100
A
PHE
101
n
102
PHE
101
A
GLY
102
n
103
GLY
102
A
TYR
103
n
104
TYR
103
A
GLY
104
n
105
GLY
104
A
ALA
105
n
106
ALA
105
A
LYS
106
n
107
LYS
106
A
ASP
107
n
108
ASP
107
A
VAL
108
n
109
VAL
108
A
ARG
109
n
110
ARG
109
A
ASN
110
n
111
ASN
110
A
LEU
111
n
112
LEU
111
A
SER
112
n
113
SER
112
A
SER
113
n
114
SER
113
A
ARG
114
n
115
ARG
114
A
ALA
115
n
116
ALA
115
A
VAL
116
n
117
VAL
116
A
ASN
117
n
118
ASN
117
A
HIS
118
n
119
HIS
118
A
ILE
119
n
120
ILE
119
A
ARG
120
n
121
ARG
120
A
SER
121
n
122
SER
121
A
VAL
122
n
123
VAL
122
A
TRP
123
n
124
TRP
123
A
GLU
124
n
125
GLU
124
A
ASP
125
n
126
ASP
125
A
LEU
126
n
127
LEU
126
A
LEU
127
n
128
LEU
127
A
GLU
128
n
129
GLU
128
A
ASP
129
n
130
ASP
129
A
THR
130
n
131
THR
130
A
GLU
131
n
132
GLU
131
A
THR
132
n
133
THR
132
A
PRO
133
n
134
PRO
133
A
ILE
134
n
135
ILE
134
A
ASP
135
n
136
ASP
135
A
THR
136
n
137
THR
136
A
THR
137
n
138
THR
137
A
ILE
138
n
139
ILE
138
A
MET
139
n
140
MET
139
A
ALA
140
n
141
ALA
140
A
LYS
141
n
142
LYS
141
A
SER
142
n
143
SER
142
A
GLU
143
n
144
GLU
143
A
VAL
144
n
145
VAL
144
A
PHE
145
n
146
PHE
145
A
CYS
146
n
147
CYS
146
A
VAL
147
n
148
VAL
147
A
GLN
148
n
149
GLN
148
A
PRO
149
n
150
PRO
149
A
GLU
150
n
151
GLU
150
A
n
152
151
A
n
153
152
A
n
154
153
A
ARG
154
n
155
ARG
154
A
LYS
155
n
156
LYS
155
A
PRO
156
n
157
PRO
156
A
ALA
157
n
158
ALA
157
A
ARG
158
n
159
ARG
158
A
LEU
159
n
160
LEU
159
A
ILE
160
n
161
ILE
160
A
VAL
161
n
162
VAL
161
A
PHE
162
n
163
PHE
162
A
PRO
163
n
164
PRO
163
A
ASP
164
n
165
ASP
164
A
LEU
165
n
166
LEU
165
A
GLY
166
n
167
GLY
166
A
VAL
167
n
168
VAL
167
A
ARG
168
n
169
ARG
168
A
VAL
169
n
170
VAL
169
A
CYS
170
n
171
CYS
170
A
GLU
171
n
172
GLU
171
A
LYS
172
n
173
LYS
172
A
MET
173
n
174
MET
173
A
ALA
174
n
175
ALA
174
A
LEU
175
n
176
LEU
175
A
TYR
176
n
177
TYR
176
A
ASP
177
n
178
ASP
177
A
VAL
178
n
179
VAL
178
A
VAL
179
n
180
VAL
179
A
SER
180
n
181
SER
180
A
THR
181
n
182
THR
181
A
LEU
182
n
183
LEU
182
A
PRO
183
n
184
PRO
183
A
GLN
184
n
185
GLN
184
A
ALA
185
n
186
ALA
185
A
VAL
186
n
187
VAL
186
A
MET
187
n
188
MET
187
A
GLY
188
n
189
GLY
188
A
SER
189
n
190
SER
189
A
SER
190
n
191
SER
190
A
TYR
191
n
192
TYR
191
A
GLY
192
n
193
GLY
192
A
PHE
193
n
194
PHE
193
A
GLN
194
n
195
GLN
194
A
TYR
195
n
196
TYR
195
A
SER
196
n
197
SER
196
A
PRO
197
n
198
PRO
197
A
LYS
198
n
199
LYS
198
A
GLN
199
n
200
GLN
199
A
ARG
200
n
201
ARG
200
A
VAL
201
n
202
VAL
201
A
GLU
202
n
203
GLU
202
A
PHE
203
n
204
PHE
203
A
LEU
204
n
205
LEU
204
A
VAL
205
n
206
VAL
205
A
ASN
206
n
207
ASN
206
A
THR
207
n
208
THR
207
A
TRP
208
n
209
TRP
208
A
LYS
209
n
210
LYS
209
A
SER
210
n
211
SER
210
A
LYS
211
n
212
LYS
211
A
LYS
212
n
213
LYS
212
A
CYS
213
n
214
CYS
213
A
PRO
214
n
215
PRO
214
A
MET
215
n
216
MET
215
A
GLY
216
n
217
GLY
216
A
PHE
217
n
218
PHE
217
A
SER
218
n
219
SER
218
A
TYR
219
n
220
TYR
219
A
ASP
220
n
221
ASP
220
A
THR
221
n
222
THR
221
A
ARG
222
n
223
ARG
222
A
CYS
223
n
224
CYS
223
A
PHE
224
n
225
PHE
224
A
ASP
225
n
226
ASP
225
A
SER
226
n
227
SER
226
A
THR
227
n
228
THR
227
A
VAL
228
n
229
VAL
228
A
THR
229
n
230
THR
229
A
GLU
230
n
231
GLU
230
A
SER
231
n
232
SER
231
A
ASP
232
n
233
ASP
232
A
ILE
233
n
234
ILE
233
A
ARG
234
n
235
ARG
234
A
VAL
235
n
236
VAL
235
A
GLU
236
n
237
GLU
236
A
GLU
237
n
238
GLU
237
A
SER
238
n
239
SER
238
A
ILE
239
n
240
ILE
239
A
TYR
240
n
241
TYR
240
A
GLN
241
n
242
GLN
241
A
CYS
242
n
243
CYS
242
A
CYS
243
n
244
CYS
243
A
ASP
244
n
245
ASP
244
A
LEU
245
n
246
LEU
245
A
ALA
246
n
247
ALA
246
A
PRO
247
n
248
PRO
247
A
GLU
248
n
249
GLU
248
A
ALA
249
n
250
ALA
249
A
ARG
250
n
251
ARG
250
A
GLN
251
n
252
GLN
251
A
ALA
252
n
253
ALA
252
A
ILE
253
n
254
ILE
253
A
ARG
254
n
255
ARG
254
A
SER
255
n
256
SER
255
A
LEU
256
n
257
LEU
256
A
THR
257
n
258
THR
257
A
GLU
258
n
259
GLU
258
A
ARG
259
n
260
ARG
259
A
LEU
260
n
261
LEU
260
A
TYR
261
n
262
TYR
261
A
ILE
262
n
263
ILE
262
A
GLY
263
n
264
GLY
263
A
GLY
264
n
265
GLY
264
A
PRO
265
n
266
PRO
265
A
LEU
266
n
267
LEU
266
A
THR
267
n
268
THR
267
A
ASN
268
n
269
ASN
268
A
SER
269
n
270
SER
269
A
LYS
270
n
271
LYS
270
A
GLY
271
n
272
GLY
271
A
GLN
272
n
273
GLN
272
A
ASN
273
n
274
ASN
273
A
CYS
274
n
275
CYS
274
A
GLY
275
n
276
GLY
275
A
TYR
276
n
277
TYR
276
A
ARG
277
n
278
ARG
277
A
ARG
278
n
279
ARG
278
A
CYS
279
n
280
CYS
279
A
ARG
280
n
281
ARG
280
A
ALA
281
n
282
ALA
281
A
SER
282
n
283
SER
282
A
GLY
283
n
284
GLY
283
A
VAL
284
n
285
VAL
284
A
LEU
285
n
286
LEU
285
A
THR
286
n
287
THR
286
A
THR
287
n
288
THR
287
A
SER
288
n
289
SER
288
A
CYS
289
n
290
CYS
289
A
GLY
290
n
291
GLY
290
A
ASN
291
n
292
ASN
291
A
THR
292
n
293
THR
292
A
LEU
293
n
294
LEU
293
A
THR
294
n
295
THR
294
A
CYS
295
n
296
CYS
295
A
TYR
296
n
297
TYR
296
A
LEU
297
n
298
LEU
297
A
LYS
298
n
299
LYS
298
A
ALA
299
n
300
ALA
299
A
THR
300
n
301
THR
300
A
ALA
301
n
302
ALA
301
A
ALA
302
n
303
ALA
302
A
CYS
303
n
304
CYS
303
A
ARG
304
n
305
ARG
304
A
ALA
305
n
306
ALA
305
A
ALA
306
n
307
ALA
306
A
LYS
307
n
308
LYS
307
A
LEU
308
n
309
LEU
308
A
GLN
309
n
310
GLN
309
A
ASP
310
n
311
ASP
310
A
CYS
311
n
312
CYS
311
A
THR
312
n
313
THR
312
A
MET
313
n
314
MET
313
A
LEU
314
n
315
LEU
314
A
VAL
315
n
316
VAL
315
A
ASN
316
n
317
ASN
316
A
GLY
317
n
318
GLY
317
A
ASP
318
n
319
ASP
318
A
ASP
319
n
320
ASP
319
A
LEU
320
n
321
LEU
320
A
VAL
321
n
322
VAL
321
A
VAL
322
n
323
VAL
322
A
ILE
323
n
324
ILE
323
A
CYS
324
n
325
CYS
324
A
GLU
325
n
326
GLU
325
A
SER
326
n
327
SER
326
A
ALA
327
n
328
ALA
327
A
GLY
328
n
329
GLY
328
A
THR
329
n
330
THR
329
A
GLN
330
n
331
GLN
330
A
GLU
331
n
332
GLU
331
A
ASP
332
n
333
ASP
332
A
ALA
333
n
334
ALA
333
A
ALA
334
n
335
ALA
334
A
ALA
335
n
336
ALA
335
A
LEU
336
n
337
LEU
336
A
ARG
337
n
338
ARG
337
A
ALA
338
n
339
ALA
338
A
PHE
339
n
340
PHE
339
A
THR
340
n
341
THR
340
A
GLU
341
n
342
GLU
341
A
ALA
342
n
343
ALA
342
A
MET
343
n
344
MET
343
A
THR
344
n
345
THR
344
A
ARG
345
n
346
ARG
345
A
TYR
346
n
347
TYR
346
A
SER
347
n
348
SER
347
A
ALA
348
n
349
ALA
348
A
PRO
349
n
350
PRO
349
A
PRO
350
n
351
PRO
350
A
GLY
351
n
352
GLY
351
A
ASP
352
n
353
ASP
352
A
PRO
353
n
354
PRO
353
A
PRO
354
n
355
PRO
354
A
GLN
355
n
356
GLN
355
A
PRO
356
n
357
PRO
356
A
GLU
357
n
358
GLU
357
A
TYR
358
n
359
TYR
358
A
ASP
359
n
360
ASP
359
A
LEU
360
n
361
LEU
360
A
GLU
361
n
362
GLU
361
A
LEU
362
n
363
LEU
362
A
ILE
363
n
364
ILE
363
A
THR
364
n
365
THR
364
A
SER
365
n
366
SER
365
A
CYS
366
n
367
CYS
366
A
SER
367
n
368
SER
367
A
SER
368
n
369
SER
368
A
ASN
369
n
370
ASN
369
A
VAL
370
n
371
VAL
370
A
SER
371
n
372
SER
371
A
VAL
372
n
373
VAL
372
A
ALA
373
n
374
ALA
373
A
HIS
374
n
375
HIS
374
A
ASP
375
n
376
ASP
375
A
ALA
376
n
377
ALA
376
A
SER
377
n
378
SER
377
A
GLY
378
n
379
GLY
378
A
LYS
379
n
380
LYS
379
A
ARG
380
n
381
ARG
380
A
VAL
381
n
382
VAL
381
A
TYR
382
n
383
TYR
382
A
TYR
383
n
384
TYR
383
A
LEU
384
n
385
LEU
384
A
THR
385
n
386
THR
385
A
ARG
386
n
387
ARG
386
A
ASP
387
n
388
ASP
387
A
PRO
388
n
389
PRO
388
A
THR
389
n
390
THR
389
A
THR
390
n
391
THR
390
A
PRO
391
n
392
PRO
391
A
LEU
392
n
393
LEU
392
A
ALA
393
n
394
ALA
393
A
ARG
394
n
395
ARG
394
A
ALA
395
n
396
ALA
395
A
ALA
396
n
397
ALA
396
A
TRP
397
n
398
TRP
397
A
GLU
398
n
399
GLU
398
A
THR
399
n
400
THR
399
A
ALA
400
n
401
ALA
400
A
ARG
401
n
402
ARG
401
A
HIS
402
n
403
HIS
402
A
THR
403
n
404
THR
403
A
PRO
404
n
405
PRO
404
A
ILE
405
n
406
ILE
405
A
ASN
406
n
407
ASN
406
A
SER
407
n
408
SER
407
A
TRP
408
n
409
TRP
408
A
LEU
409
n
410
LEU
409
A
GLY
410
n
411
GLY
410
A
ASN
411
n
412
ASN
411
A
ILE
412
n
413
ILE
412
A
ILE
413
n
414
ILE
413
A
MET
414
n
415
MET
414
A
TYR
415
n
416
TYR
415
A
ALA
416
n
417
ALA
416
A
PRO
417
n
418
PRO
417
A
THR
418
n
419
THR
418
A
LEU
419
n
420
LEU
419
A
TRP
420
n
421
TRP
420
A
ALA
421
n
422
ALA
421
A
ARG
422
n
423
ARG
422
A
MET
423
n
424
MET
423
A
ILE
424
n
425
ILE
424
A
LEU
425
n
426
LEU
425
A
MET
426
n
427
MET
426
A
THR
427
n
428
THR
427
A
HIS
428
n
429
HIS
428
A
PHE
429
n
430
PHE
429
A
PHE
430
n
431
PHE
430
A
SER
431
n
432
SER
431
A
ILE
432
n
433
ILE
432
A
LEU
433
n
434
LEU
433
A
LEU
434
n
435
LEU
434
A
ALA
435
n
436
ALA
435
A
GLN
436
n
437
GLN
436
A
GLU
437
n
438
GLU
437
A
GLN
438
n
439
GLN
438
A
LEU
439
n
440
LEU
439
A
GLU
440
n
441
GLU
440
A
LYS
441
n
442
LYS
441
A
ALA
442
n
443
ALA
442
A
LEU
443
n
444
LEU
443
A
ASP
444
n
445
ASP
444
A
CYS
445
n
446
CYS
445
A
GLN
446
n
447
GLN
446
A
ILE
447
n
448
ILE
447
A
TYR
448
n
449
TYR
448
A
GLY
449
n
450
GLY
449
A
ALA
450
n
451
ALA
450
A
CYS
451
n
452
CYS
451
A
TYR
452
n
453
TYR
452
A
SER
453
n
454
SER
453
A
ILE
454
n
455
ILE
454
A
GLU
455
n
456
GLU
455
A
PRO
456
n
457
PRO
456
A
LEU
457
n
458
LEU
457
A
ASP
458
n
459
ASP
458
A
LEU
459
n
460
LEU
459
A
PRO
460
n
461
PRO
460
A
GLN
461
n
462
GLN
461
A
ILE
462
n
463
ILE
462
A
ILE
463
n
464
ILE
463
A
GLU
464
n
465
GLU
464
A
ARG
465
n
466
ARG
465
A
LEU
466
n
467
LEU
466
A
HIS
467
n
468
HIS
467
A
GLY
468
n
469
GLY
468
A
LEU
469
n
470
LEU
469
A
SER
470
n
471
SER
470
A
ALA
471
n
472
ALA
471
A
PHE
472
n
473
PHE
472
A
THR
473
n
474
THR
473
A
LEU
474
n
475
LEU
474
A
HIS
475
n
476
HIS
475
A
SER
476
n
477
SER
476
A
TYR
477
n
478
TYR
477
A
SER
478
n
479
SER
478
A
PRO
479
n
480
PRO
479
A
GLY
480
n
481
GLY
480
A
GLU
481
n
482
GLU
481
A
ILE
482
n
483
ILE
482
A
ASN
483
n
484
ASN
483
A
ARG
484
n
485
ARG
484
A
VAL
485
n
486
VAL
485
A
ALA
486
n
487
ALA
486
A
SER
487
n
488
SER
487
A
CYS
488
n
489
CYS
488
A
LEU
489
n
490
LEU
489
A
ARG
490
n
491
ARG
490
A
LYS
491
n
492
LYS
491
A
LEU
492
n
493
LEU
492
A
GLY
493
n
494
GLY
493
A
VAL
494
n
495
VAL
494
A
PRO
495
n
496
PRO
495
A
PRO
496
n
497
PRO
496
A
LEU
497
n
498
LEU
497
A
ARG
498
n
499
ARG
498
A
THR
499
n
500
THR
499
A
TRP
500
n
501
TRP
500
A
ARG
501
n
502
ARG
501
A
HIS
502
n
503
HIS
502
A
ARG
503
n
504
ARG
503
A
ALA
504
n
505
ALA
504
A
ARG
505
n
506
ARG
505
A
SER
506
n
507
SER
506
A
VAL
507
n
508
VAL
507
A
ARG
508
n
509
ARG
508
A
ALA
509
n
510
ALA
509
A
LYS
510
n
511
LYS
510
A
LEU
511
n
512
LEU
511
A
LEU
512
n
513
LEU
512
A
SER
513
n
514
SER
513
A
GLN
514
n
515
GLN
514
A
GLY
515
n
516
GLY
515
A
GLY
516
n
517
GLY
516
A
ARG
517
n
518
ARG
517
A
ALA
518
n
519
ALA
518
A
ALA
519
n
520
ALA
519
A
THR
520
n
521
THR
520
A
CYS
521
n
522
CYS
521
A
GLY
522
n
523
GLY
522
A
ARG
523
n
524
ARG
523
A
TYR
524
n
525
TYR
524
A
LEU
525
n
526
LEU
525
A
PHE
526
n
527
PHE
526
A
ASN
527
n
528
ASN
527
A
TRP
528
n
529
TRP
528
A
ALA
529
n
530
ALA
529
A
VAL
530
n
531
VAL
530
A
ARG
531
n
532
ARG
531
A
THR
532
n
533
THR
532
A
LYS
533
n
534
LYS
533
A
LEU
534
n
535
LEU
534
A
LYS
535
n
536
LYS
535
A
LEU
536
n
537
LEU
536
A
THR
537
n
538
THR
537
A
PRO
538
n
539
PRO
538
A
ILE
539
n
540
ILE
539
A
PRO
540
n
541
PRO
540
A
ALA
541
n
542
ALA
541
A
ALA
542
n
543
ALA
542
A
SER
543
n
544
SER
543
A
GLN
544
n
545
GLN
544
A
LEU
545
n
546
LEU
545
A
ASP
546
n
547
ASP
546
A
LEU
547
n
548
LEU
547
A
SER
548
n
549
SER
548
A
GLY
549
n
550
GLY
549
A
TRP
550
n
551
TRP
550
A
PHE
551
n
552
PHE
551
A
VAL
552
n
553
VAL
552
A
ALA
553
n
554
ALA
553
A
GLY
554
n
555
GLY
554
A
TYR
555
n
556
TYR
555
A
SER
556
n
557
SER
556
A
GLY
557
n
558
GLY
557
A
GLY
558
n
559
GLY
558
A
ASP
559
n
560
ASP
559
A
ILE
560
n
561
ILE
560
A
TYR
561
n
562
TYR
561
A
HIS
562
n
563
HIS
562
A
SER
563
n
564
SER
563
A
n
565
564
A
n
566
565
A
n
567
566
A
n
568
567
A
n
569
568
A
n
570
569
A
n
571
570
A
n
572
571
A
n
573
572
A
n
574
573
A
n
575
574
A
n
576
575
A
n
577
576
A
n
578
577
A
n
579
578
A
0.9531
0.4845
-0.6884
0.7491
-0.5203
0.9229
0.0466
-0.0278
0.0057
0.0982
-0.0642
0.0501
0.0451
0.0995
0.0211
0.1080
-0.0857
0.0004
0.0683
0.0017
0.0242
refined
-41.7603
34.3760
-2.7200
X-RAY DIFFRACTION
X-RAY DIFFRACTION
1
CHAIN A
software_defined_assembly
PISA
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
THR
5
A
N
THR
6
A
O
TYR
276
A
O
TYR
277
A
N
ARG
277
A
N
ARG
278
A
O
GLY
264
A
O
GLY
265
A
N
THR
267
A
N
THR
268
A
O
THR
136
A
O
THR
137
A
N
MET
139
A
N
MET
140
A
O
ILE
160
A
O
ILE
161
A
N
TYR
38
A
N
TYR
39
A
O
PHE
145
A
O
PHE
146
A
N
TYR
219
A
N
TYR
220
A
O
LEU
320
A
O
LEU
321
A
N
GLU
325
A
N
GLU
326
A
O
GLN
309
A
O
GLN
310
A
N
ALA
373
A
N
ALA
374
A
O
VAL
381
A
O
VAL
382
A
N
ILE
447
A
N
ILE
448
A
O
ALA
450
A
O
ALA
451
1
A
OG
SER
563
A
OG
SER
564
1
Y
1
A
ALA
0
A
ALA
1
1
Y
1
A
LYS
151
A
LYS
152
1
Y
1
A
GLY
152
A
GLY
153
1
Y
1
A
GLY
153
A
GLY
154
1
Y
1
A
LEU
564
A
LEU
565
1
Y
1
A
SER
565
A
SER
566
1
Y
1
A
ARG
566
A
ARG
567
1
Y
1
A
ALA
567
A
ALA
568
1
Y
1
A
ARG
568
A
ARG
569
1
Y
1
A
PRO
569
A
PRO
570
1
Y
1
A
ARG
570
A
ARG
571
1
Y
1
A
LEU
571
A
LEU
572
1
Y
1
A
GLU
572
A
GLU
573
1
Y
1
A
HIS
573
A
HIS
574
1
Y
1
A
HIS
574
A
HIS
575
1
Y
1
A
HIS
575
A
HIS
576
1
Y
1
A
HIS
576
A
HIS
577
1
Y
1
A
HIS
577
A
HIS
578
1
Y
1
A
HIS
578
A
HIS
579
1
Y
1
A
ALA
15
-113.96
-167.76
1
A
ILE
23
-56.80
108.52
1
A
PRO
149
-53.34
-83.43
1
A
LEU
260
-136.00
-57.07
1
A
TYR
346
-68.54
0.08
1
A
SER
347
71.21
51.52
1
A
GLU
437
71.50
46.43
1
A
GLN
544
-142.07
59.00
1
A
SER
548
-41.42
-70.35
44.58
-2.70320
0.00000
0.00000
-2.70320
0.00000
5.40640
RESIDUES 564-569 ARE DISORDERED
0.221
0.170
0.172
2.66
19.70
1831
36792
5.00
99.1
0.280
1
1.390
MOLECULAR REPLACEMENT
20.370
0.90
1.11
PDB ENTRY 1NB4
ML
FLAT BULK SOLVENT MODEL
32.84
0.31
2.66
19.70
139
4505
0
0
4366
0.008
4461
1.116
6055
17.641
1632
0.074
686
0.004
772
0.3203
0.2446
2.7507
146
3188
91.00
0.3299
0.2130
2.8605
173
3515
100.00
0.2288
0.1982
2.9902
178
3472
100.00
0.2456
0.1944
3.1473
174
3498
100.00
0.2496
0.2032
3.3436
181
3501
100.00
0.2451
0.1831
3.6003
184
3506
100.00
0.2414
0.1731
3.9599
213
3478
100.00
0.1953
0.1429
4.5269
181
3560
100.00
0.1645
0.1279
5.6806
197
3553
100.00
0.1764
0.1420
19.6958
204
3690
100.00
41.01
2.600
19.700
2XHW
36792
2.000
0.20000
1
8.5900
9.100
99.2
0.73000
2.66
2.72
2.550
1
6.40
92.4
refinement
PHENIX
(PHENIX.REFINE: 1.6_289)
data reduction
XDS
data scaling
XDS
phasing
MOLREP
HCV-J4 NS5B Polymerase Trigonal Crystal Form
1
N
N
2
N
N
A
ASN
24
A
ASN
25
HELX_P
A
SER
29
A
SER
30
1
1
6
A
HIS
33
A
HIS
34
HELX_P
A
ASN
35
A
ASN
36
5
2
3
A
THR
41
A
THR
42
HELX_P
A
ARG
43
A
ARG
44
5
3
3
A
SER
44
A
SER
45
HELX_P
A
THR
53
A
THR
54
1
4
10
A
ASP
61
A
ASP
62
HELX_P
A
SER
76
A
SER
77
1
5
16
A
SER
84
A
SER
85
HELX_P
A
LEU
91
A
LEU
92
1
6
8
A
GLY
104
A
GLY
105
HELX_P
A
ASN
110
A
ASN
111
1
7
7
A
SER
112
A
SER
113
HELX_P
A
ASP
129
A
ASP
130
1
8
18
A
ASP
164
A
ASP
165
HELX_P
A
GLY
188
A
GLY
189
1
9
25
A
GLY
192
A
GLY
193
HELX_P
A
TYR
195
A
TYR
196
5
10
4
A
SER
196
A
SER
197
HELX_P
A
SER
210
A
SER
211
1
11
15
A
CYS
223
A
CYS
224
HELX_P
A
VAL
228
A
VAL
229
1
12
6
A
THR
229
A
THR
230
HELX_P
A
GLN
241
A
GLN
242
1
13
13
A
ALA
246
A
ALA
247
HELX_P
A
LEU
260
A
LEU
261
1
14
15
A
THR
286
A
THR
287
HELX_P
A
LYS
307
A
LYS
308
1
15
22
A
GLY
328
A
GLY
329
HELX_P
A
TYR
346
A
TYR
347
1
16
19
A
ASP
359
A
ASP
360
HELX_P
A
ILE
363
A
ILE
364
5
17
5
A
PRO
388
A
PRO
389
HELX_P
A
ARG
401
A
ARG
402
1
18
14
A
ASN
406
A
ASN
407
HELX_P
A
TYR
415
A
TYR
416
1
19
10
A
THR
418
A
THR
419
HELX_P
A
ILE
424
A
ILE
425
1
20
7
A
ILE
424
A
ILE
425
HELX_P
A
GLU
437
A
GLU
438
1
21
14
A
GLU
455
A
GLU
456
HELX_P
A
LEU
457
A
LEU
458
5
22
3
A
ASP
458
A
ASP
459
HELX_P
A
GLY
468
A
GLY
469
1
23
11
A
LEU
469
A
LEU
470
HELX_P
A
THR
473
A
THR
474
5
24
5
A
SER
478
A
SER
479
HELX_P
A
GLY
493
A
GLY
494
1
25
16
A
PRO
496
A
PRO
497
HELX_P
A
GLN
514
A
GLN
515
1
26
19
A
GLY
515
A
GLY
516
HELX_P
A
PHE
526
A
PHE
527
1
27
12
A
ASN
527
A
ASN
528
HELX_P
A
VAL
530
A
VAL
531
5
28
4
A
LEU
547
A
LEU
548
HELX_P
A
PHE
551
A
PHE
552
5
29
5
TRANSFERASE
REPLICATION, TRANSCRIPTION, TRANSFERASE
POLG_HCVJ4
UNP
1
2420
O92972
SMSYTWTGALITPCAAEESKLPINPLSNSLLRHHNMVYATTSRSASLRQKKVTFDRLQVLDDHYRDVLKEMKAKASTVKA
KLLSIEEACKLTPPHSAKSKFGYGAKDVRNLSSRAVNHIRSVWEDLLEDTETPIDTTIMAKSEVFCVQPEKGGRKPARLI
VFPDLGVRVCEKMALYDVVSTLPQAVMGSSYGFQYSPKQRVEFLVNTWKSKKCPMGFSYDTRCFDSTVTESDIRVEESIY
QCCDLAPEARQAIRSLTERLYIGGPLTNSKGQNCGYRRCRASGVLTTSCGNTLTCYLKATAACRAAKLQDCTMLVNGDDL
VVICESAGTQEDAAALRAFTEAMTRYSAPPGDPPQPEYDLELITSCSSNVSVAHDASGKRVYYLTRDPTTPLARAAWETA
RHTPINSWLGNIIMYAPTLWARMILMTHFFSILLAQEQLEKALDCQIYGACYSIEPLDLPQIIERLHGLSAFTLHSYSPG
EINRVASCLRKLGVPPLRTWRHRARSVRAKLLSQGGRAATCGRYLFNWAVRTKLKLTPIPAASQLDLSGWFVAGYSGGDI
YHSLSRARPR
2420
2989
2XHW
1
570
O92972
A
1
2
571
1
expression tag
ALA
0
2XHW
A
O92972
UNP
1
1
expression tag
LEU
571
2XHW
A
O92972
UNP
572
1
expression tag
GLU
572
2XHW
A
O92972
UNP
573
1
expression tag
HIS
573
2XHW
A
O92972
UNP
574
1
expression tag
HIS
574
2XHW
A
O92972
UNP
575
1
expression tag
HIS
575
2XHW
A
O92972
UNP
576
1
expression tag
HIS
576
2XHW
A
O92972
UNP
577
1
expression tag
HIS
577
2XHW
A
O92972
UNP
578
1
expression tag
HIS
578
2XHW
A
O92972
UNP
579
5
2
3
2
2
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
TYR
4
A
TYR
5
A
TRP
6
A
TRP
7
A
ASN
273
A
ASN
274
A
ARG
277
A
ARG
278
A
GLY
264
A
GLY
265
A
THR
267
A
THR
268
A
THR
136
A
THR
137
A
ALA
140
A
ALA
141
A
LEU
159
A
LEU
160
A
PRO
163
A
PRO
164
A
VAL
37
A
VAL
38
A
ALA
39
A
ALA
40
A
VAL
144
A
VAL
145
A
CYS
146
A
CYS
147
A
PRO
214
A
PRO
215
A
ASP
220
A
ASP
221
A
ASP
319
A
ASP
320
A
GLU
325
A
GLU
326
A
GLN
309
A
GLN
310
A
ASN
316
A
ASN
317
A
SER
368
A
SER
369
A
HIS
374
A
HIS
375
A
ARG
380
A
ARG
381
A
ARG
386
A
ARG
387
A
LEU
443
A
LEU
444
A
ILE
447
A
ILE
448
A
ALA
450
A
ALA
451
A
ILE
454
A
ILE
455
154
P 32 2 1