0.016126
0.009311
0.000000
0.000000
0.018621
0.000000
0.000000
0.000000
0.011913
0.00000
0.00000
0.00000
Rezacova, P.
Brynda, J.
Kozisek, M.
Saskova, K.
Konvalinka, J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
120.00
62.010
62.010
83.942
C37 H48 N4 O5
628.801
N-{1-BENZYL-4-[2-(2,6-DIMETHYL-PHENOXY)-ACETYLAMINO]-3-HYDROXY-5-PHENYL-PENTYL}-3-METHYL-2-(2-OXO-TETRAHYDRO-PYRIMIDIN-1-YL)-BUTYRAMIDE
ABT-378; LOPINAVIR
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
C
N
2
N
C
N
3
N
N
N
4
N
C
N
5
N
N
Y
6
N
C
Y
7
N
C
Y
8
N
C
Y
9
N
C
Y
10
N
C
Y
11
N
C
N
12
N
O
N
13
S
C
N
14
N
C
N
15
N
N
N
16
S
C
N
17
N
C
N
18
N
C
N
19
N
C
N
20
N
O
Y
21
N
C
Y
22
N
C
Y
23
N
C
Y
24
N
C
Y
25
N
C
Y
26
N
C
N
27
N
C
N
28
N
C
N
29
S
C
N
30
S
C
N
31
N
N
N
32
N
C
N
33
N
C
N
34
N
O
Y
35
N
C
N
36
N
O
N
37
N
C
N
38
N
O
Y
39
N
C
Y
40
N
C
Y
41
N
C
Y
42
N
C
Y
43
N
C
N
44
N
C
N
45
N
C
N
46
N
C
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
N
N
96
S
C
N
97
N
C
N
98
N
O
N
99
N
C
N
100
N
O
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
N
N
116
N
C
N
117
N
N
N
118
N
N
N
119
N
O
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
N
N
136
S
C
N
137
N
C
N
138
N
O
N
139
N
C
N
140
N
C
N
141
N
O
N
142
N
N
N
143
N
O
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
N
N
153
S
C
N
154
N
C
N
155
N
O
N
156
N
C
N
157
N
C
N
158
N
O
N
159
N
O
N
160
N
O
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
N
N
169
R
C
N
170
N
C
N
171
N
O
N
172
N
C
N
173
N
S
N
174
N
O
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
N
N
183
S
C
N
184
N
C
N
185
N
O
N
186
N
C
N
187
N
C
N
188
N
C
N
189
N
O
N
190
N
N
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
N
N
203
S
C
N
204
N
C
N
205
N
O
N
206
N
C
N
207
N
C
N
208
N
C
N
209
N
O
N
210
N
O
N
211
N
O
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
N
N
222
N
C
N
223
N
C
N
224
N
O
N
225
N
O
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
C
N
232
N
O
N
233
N
C
N
234
N
O
N
235
N
C
N
236
N
O
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
N
N
246
S
C
N
247
N
C
N
248
N
O
N
249
N
C
Y
250
N
C
Y
251
N
N
Y
252
N
C
Y
253
N
C
Y
254
N
N
N
255
N
O
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
O
N
267
N
H
N
268
N
H
N
269
N
N
N
270
S
C
N
271
N
C
N
272
N
O
N
273
S
C
N
274
N
C
N
275
N
C
N
276
N
C
N
277
N
O
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
N
N
292
S
C
N
293
N
C
N
294
N
O
N
295
N
C
N
296
N
C
N
297
N
C
N
298
N
C
N
299
N
O
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
N
N
314
S
C
N
315
N
C
N
316
N
O
N
317
N
C
N
318
N
C
N
319
N
C
N
320
N
C
N
321
N
N
N
322
N
O
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
N
N
339
S
C
N
340
N
C
N
341
N
O
N
342
N
C
N
343
N
C
N
344
N
S
N
345
N
C
N
346
N
O
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
N
N
359
S
C
N
360
N
C
N
361
N
O
N
362
N
C
Y
363
N
C
Y
364
N
C
Y
365
N
C
Y
366
N
C
Y
367
N
C
Y
368
N
C
N
369
N
O
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
N
N
382
S
C
N
383
N
C
N
384
N
O
N
385
N
C
N
386
N
C
N
387
N
C
N
388
N
O
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
N
N
399
S
C
N
400
N
C
N
401
N
O
N
402
N
C
N
403
N
O
N
404
N
O
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
N
N
413
S
C
N
414
N
C
N
415
N
O
N
416
R
C
N
417
N
O
N
418
N
C
N
419
N
O
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
N
N
430
S
C
N
431
N
C
N
432
N
O
N
433
N
C
Y
434
N
C
Y
435
N
C
Y
436
N
C
Y
437
N
N
Y
438
N
C
Y
439
N
C
Y
440
N
C
Y
441
N
C
Y
442
N
C
N
443
N
O
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
N
N
457
S
C
N
458
N
C
N
459
N
O
N
460
N
C
Y
461
N
C
Y
462
N
C
Y
463
N
C
Y
464
N
C
Y
465
N
C
Y
466
N
C
N
467
N
O
N
468
N
O
N
469
N
H
N
470
N
H
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
N
N
481
S
C
N
482
N
C
N
483
N
O
N
484
N
C
N
485
N
C
N
486
N
C
N
487
N
O
N
488
N
H
N
489
N
H
N
490
N
H
N
491
N
H
N
492
N
H
N
493
N
H
N
494
N
H
N
495
N
H
N
496
N
H
N
497
N
H
N
498
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
doub
N
13
N
sing
Y
14
N
doub
Y
15
N
sing
N
16
N
sing
Y
17
N
sing
N
18
N
sing
Y
19
N
doub
N
20
N
sing
Y
21
N
sing
N
22
N
sing
Y
23
N
doub
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
doub
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
Y
45
N
doub
Y
46
N
sing
N
47
N
sing
Y
48
N
sing
N
49
N
sing
Y
50
N
doub
N
51
N
sing
Y
52
N
sing
N
53
N
sing
Y
54
N
doub
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
doub
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
Y
76
N
doub
Y
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
Y
81
N
sing
N
82
N
sing
Y
83
N
doub
N
84
N
sing
Y
85
N
sing
N
86
N
sing
Y
87
N
doub
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
doub
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
doub
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
doub
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
doub
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
doub
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
doub
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
doub
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
doub
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
doub
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
doub
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
doub
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
doub
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
Y
250
N
sing
Y
251
N
doub
Y
252
N
doub
N
253
N
sing
Y
254
N
sing
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
doub
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
doub
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
doub
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
doub
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
doub
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
Y
358
N
doub
Y
359
N
sing
Y
360
N
sing
N
361
N
sing
Y
362
N
doub
N
363
N
sing
Y
364
N
doub
N
365
N
sing
Y
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
doub
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
doub
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
doub
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
doub
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
Y
427
N
doub
Y
428
N
sing
Y
429
N
sing
N
430
N
sing
Y
431
N
doub
Y
432
N
sing
Y
433
N
sing
N
434
N
sing
Y
435
N
sing
Y
436
N
doub
N
437
N
sing
Y
438
N
doub
N
439
N
sing
Y
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
doub
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
Y
455
N
doub
Y
456
N
sing
Y
457
N
sing
N
458
N
sing
Y
459
N
doub
N
460
N
sing
Y
461
N
doub
N
462
N
sing
Y
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
doub
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
sing
US
J.Virol.
JOVIAM
0825
0022-538X
82
5869
5878
10.1128/JVI.02325-07
18400858
Ninety-nine is not enough: molecular characterization of inhibitor-resistant human immunodeficiency virus type 1 protease mutants with insertions in the flap region
2008
10.2210/pdb2rkg/pdb
pdb_00002rkg
100
1
CCD
2005-10-21
MAR CCD 165 mm
SINGLE WAVELENGTH
M
x-ray
1
0.979
1.0
19-ID
APS
0.979
SYNCHROTRON
APS BEAMLINE 19-ID
10912.771
PROTEASE RETROPEPSIN
3.4.23.16
L10F,I13V,G16A,K20M,V32I,E35EE,K43T,M46V,I47V,I54M,I64V,A71V,V82A
2
man
polymer
92.094
GLYCEROL
2
syn
non-polymer
628.801
N-{1-BENZYL-4-[2-(2,6-DIMETHYL-PHENOXY)-ACETYLAMINO]-3-HYDROXY-5-PHENYL-PENTYL}-3-METHYL-2-(2-OXO-TETRAHYDRO-PYRIMIDIN-1-YL)-BUTYRAMIDE
1
syn
non-polymer
18.015
water
145
nat
water
HIV-1 PROTEASE
E.C.3.4.23.16
no
no
PQITLWQRPFVTVKIAGQLMEALLDTGADDTILEEEMSLPGRWTPKVVGGIGGFMKVRQYDQILVEICGHKVIGTVLVGP
TPANIIGRNLLTQIGCTLNF
PQITLWQRPFVTVKIAGQLMEALLDTGADDTILEEEMSLPGRWTPKVVGGIGGFMKVRQYDQILVEICGHKVIGTVLVGP
TPANIIGRNLLTQIGCTLNF
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
HIV-1
type B
sample
gag-pol
11676
human immunodeficiency virus 1
562
Escherichia coli
BL21 (DE3)
PLASMID
pET like, T7 promotor driven
1
2.13
42.38
VAPOR DIFFUSION, HANGING DROP
5.5
reservoir: 0.1M MES pH 5.5, 0.5M Ammonium Sulfate; drops: 2ul protein + 1ul reservoir Cpr=8mg/ml, 5-fold molar excess of LPV microseeding, VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
chem_comp
database_2
struct_ref_seq_dif
struct_site
chem_comp_atom
chem_comp_bond
pdbx_initial_refinement_model
struct_ncs_dom_lim
repository
Initial release
Advisory
Version format compliance
Database references
Derived calculations
Structure summary
Data collection
Refinement description
1
0
2008-08-05
1
1
2011-07-13
1
2
2021-10-20
1
3
2023-08-30
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_struct_ncs_dom_lim.beg_auth_comp_id
_struct_ncs_dom_lim.beg_label_asym_id
_struct_ncs_dom_lim.end_auth_comp_id
_struct_ncs_dom_lim.end_label_asym_id
N
RCSB
Y
RCSB
2007-10-16
REL
REL
GOL
GLYCEROL
AB1
N-{1-BENZYL-4-[2-(2,6-DIMETHYL-PHENOXY)-ACETYLAMINO]-3-HYDROXY-5-PHENYL-PENTYL}-3-METHYL-2-(2-OXO-TETRAHYDRO-PYRIMIDIN-1-YL)-BUTYRAMIDE
HOH
water
1U8G
PDB entry 1U8G
PDB
experimental model
GOL
1002
2
GOL
GOL
1002
A
AB1
501
3
AB1
AB1
501
B
GOL
1001
2
GOL
GOL
1001
B
HOH
2
4
HOH
HOH
1003
A
HOH
6
4
HOH
HOH
1004
A
HOH
8
4
HOH
HOH
1005
A
HOH
9
4
HOH
HOH
1006
A
HOH
10
4
HOH
HOH
1007
A
HOH
12
4
HOH
HOH
1008
A
HOH
13
4
HOH
HOH
1009
A
HOH
15
4
HOH
HOH
1010
A
HOH
17
4
HOH
HOH
1011
A
HOH
20
4
HOH
HOH
1012
A
HOH
22
4
HOH
HOH
1013
A
HOH
25
4
HOH
HOH
1014
A
HOH
26
4
HOH
HOH
1015
A
HOH
29
4
HOH
HOH
1016
A
HOH
30
4
HOH
HOH
1017
A
HOH
31
4
HOH
HOH
1018
A
HOH
35
4
HOH
HOH
1019
A
HOH
36
4
HOH
HOH
1020
A
HOH
37
4
HOH
HOH
1021
A
HOH
40
4
HOH
HOH
1022
A
HOH
41
4
HOH
HOH
1023
A
HOH
42
4
HOH
HOH
1024
A
HOH
44
4
HOH
HOH
1025
A
HOH
45
4
HOH
HOH
1026
A
HOH
49
4
HOH
HOH
1027
A
HOH
50
4
HOH
HOH
1028
A
HOH
52
4
HOH
HOH
1029
A
HOH
58
4
HOH
HOH
1030
A
HOH
59
4
HOH
HOH
1031
A
HOH
60
4
HOH
HOH
1032
A
HOH
61
4
HOH
HOH
1033
A
HOH
62
4
HOH
HOH
1034
A
HOH
63
4
HOH
HOH
1035
A
HOH
65
4
HOH
HOH
1036
A
HOH
72
4
HOH
HOH
1037
A
HOH
73
4
HOH
HOH
1038
A
HOH
74
4
HOH
HOH
1039
A
HOH
77
4
HOH
HOH
1040
A
HOH
78
4
HOH
HOH
1041
A
HOH
79
4
HOH
HOH
1042
A
HOH
81
4
HOH
HOH
1043
A
HOH
82
4
HOH
HOH
1044
A
HOH
84
4
HOH
HOH
1045
A
HOH
88
4
HOH
HOH
1046
A
HOH
89
4
HOH
HOH
1047
A
HOH
91
4
HOH
HOH
1048
A
HOH
93
4
HOH
HOH
1049
A
HOH
95
4
HOH
HOH
1050
A
HOH
97
4
HOH
HOH
1051
A
HOH
98
4
HOH
HOH
1052
A
HOH
99
4
HOH
HOH
1053
A
HOH
100
4
HOH
HOH
1054
A
HOH
103
4
HOH
HOH
1055
A
HOH
105
4
HOH
HOH
1056
A
HOH
106
4
HOH
HOH
1057
A
HOH
108
4
HOH
HOH
1058
A
HOH
109
4
HOH
HOH
1059
A
HOH
115
4
HOH
HOH
1060
A
HOH
117
4
HOH
HOH
1061
A
HOH
118
4
HOH
HOH
1062
A
HOH
120
4
HOH
HOH
1063
A
HOH
122
4
HOH
HOH
1064
A
HOH
123
4
HOH
HOH
1065
A
HOH
126
4
HOH
HOH
1066
A
HOH
134
4
HOH
HOH
1067
A
HOH
135
4
HOH
HOH
1068
A
HOH
137
4
HOH
HOH
1069
A
HOH
142
4
HOH
HOH
1070
A
HOH
67
4
HOH
HOH
1071
A
HOH
69
4
HOH
HOH
1002
B
HOH
101
4
HOH
HOH
1003
B
HOH
104
4
HOH
HOH
1004
B
HOH
136
4
HOH
HOH
1005
B
HOH
902
4
HOH
HOH
1006
B
HOH
1
4
HOH
HOH
1007
B
HOH
3
4
HOH
HOH
1008
B
HOH
4
4
HOH
HOH
1009
B
HOH
5
4
HOH
HOH
1010
B
HOH
7
4
HOH
HOH
1011
B
HOH
11
4
HOH
HOH
1012
B
HOH
14
4
HOH
HOH
1013
B
HOH
16
4
HOH
HOH
1014
B
HOH
18
4
HOH
HOH
1015
B
HOH
19
4
HOH
HOH
1016
B
HOH
21
4
HOH
HOH
1017
B
HOH
23
4
HOH
HOH
1018
B
HOH
24
4
HOH
HOH
1019
B
HOH
27
4
HOH
HOH
1020
B
HOH
28
4
HOH
HOH
1021
B
HOH
32
4
HOH
HOH
1022
B
HOH
33
4
HOH
HOH
1023
B
HOH
34
4
HOH
HOH
1024
B
HOH
38
4
HOH
HOH
1025
B
HOH
39
4
HOH
HOH
1026
B
HOH
43
4
HOH
HOH
1027
B
HOH
46
4
HOH
HOH
1028
B
HOH
47
4
HOH
HOH
1029
B
HOH
48
4
HOH
HOH
1030
B
HOH
51
4
HOH
HOH
1031
B
HOH
53
4
HOH
HOH
1032
B
HOH
54
4
HOH
HOH
1033
B
HOH
55
4
HOH
HOH
1034
B
HOH
56
4
HOH
HOH
1035
B
HOH
57
4
HOH
HOH
1036
B
HOH
64
4
HOH
HOH
1037
B
HOH
66
4
HOH
HOH
1038
B
HOH
68
4
HOH
HOH
1039
B
HOH
70
4
HOH
HOH
1040
B
HOH
71
4
HOH
HOH
1041
B
HOH
75
4
HOH
HOH
1042
B
HOH
76
4
HOH
HOH
1043
B
HOH
80
4
HOH
HOH
1044
B
HOH
83
4
HOH
HOH
1045
B
HOH
85
4
HOH
HOH
1046
B
HOH
86
4
HOH
HOH
1047
B
HOH
87
4
HOH
HOH
1048
B
HOH
90
4
HOH
HOH
1049
B
HOH
92
4
HOH
HOH
1050
B
HOH
94
4
HOH
HOH
1051
B
HOH
96
4
HOH
HOH
1052
B
HOH
102
4
HOH
HOH
1053
B
HOH
107
4
HOH
HOH
1054
B
HOH
110
4
HOH
HOH
1055
B
HOH
111
4
HOH
HOH
1056
B
HOH
112
4
HOH
HOH
1057
B
HOH
113
4
HOH
HOH
1058
B
HOH
114
4
HOH
HOH
1059
B
HOH
116
4
HOH
HOH
1060
B
HOH
119
4
HOH
HOH
1061
B
HOH
121
4
HOH
HOH
1062
B
HOH
124
4
HOH
HOH
1063
B
HOH
125
4
HOH
HOH
1064
B
HOH
127
4
HOH
HOH
1065
B
HOH
128
4
HOH
HOH
1066
B
HOH
129
4
HOH
HOH
1067
B
HOH
130
4
HOH
HOH
1068
B
HOH
131
4
HOH
HOH
1069
B
HOH
132
4
HOH
HOH
1070
B
HOH
133
4
HOH
HOH
1071
B
HOH
138
4
HOH
HOH
1072
B
HOH
139
4
HOH
HOH
1073
B
HOH
140
4
HOH
HOH
1074
B
HOH
141
4
HOH
HOH
1075
B
HOH
143
4
HOH
HOH
1076
B
HOH
144
4
HOH
HOH
1077
B
PRO
1
n
1
PRO
1
A
GLN
2
n
2
GLN
2
A
ILE
3
n
3
ILE
3
A
THR
4
n
4
THR
4
A
LEU
5
n
5
LEU
5
A
TRP
6
n
6
TRP
6
A
GLN
7
n
7
GLN
7
A
ARG
8
n
8
ARG
8
A
PRO
9
n
9
PRO
9
A
PHE
10
n
10
PHE
10
A
VAL
11
n
11
VAL
11
A
THR
12
n
12
THR
12
A
VAL
13
n
13
VAL
13
A
LYS
14
n
14
LYS
14
A
ILE
15
n
15
ILE
15
A
ALA
16
n
16
ALA
16
A
GLY
17
n
17
GLY
17
A
GLN
18
n
18
GLN
18
A
LEU
19
n
19
LEU
19
A
MET
20
n
20
MET
20
A
GLU
21
n
21
GLU
21
A
ALA
22
n
22
ALA
22
A
LEU
23
n
23
LEU
23
A
LEU
24
n
24
LEU
24
A
ASP
25
n
25
ASP
25
A
THR
26
n
26
THR
26
A
GLY
27
n
27
GLY
27
A
ALA
28
n
28
ALA
28
A
ASP
29
n
29
ASP
29
A
ASP
30
n
30
ASP
30
A
THR
31
n
31
THR
31
A
ILE
32
n
32
ILE
32
A
LEU
33
n
33
LEU
33
A
GLU
34
n
34
GLU
34
A
GLU
35
n
35
GLU
35
A
GLU
36
n
36
GLU
36
A
MET
37
n
37
MET
37
A
SER
38
n
38
SER
38
A
LEU
39
n
39
LEU
39
A
PRO
40
n
40
PRO
40
A
GLY
41
n
41
GLY
41
A
ARG
42
n
42
ARG
42
A
TRP
43
n
43
TRP
43
A
THR
44
n
44
THR
44
A
PRO
45
n
45
PRO
45
A
LYS
46
n
46
LYS
46
A
VAL
47
n
47
VAL
47
A
VAL
48
n
48
VAL
48
A
GLY
49
n
49
GLY
49
A
GLY
50
n
50
GLY
50
A
ILE
51
n
51
ILE
51
A
GLY
52
n
52
GLY
52
A
GLY
53
n
53
GLY
53
A
PHE
54
n
54
PHE
54
A
MET
55
n
55
MET
55
A
LYS
56
n
56
LYS
56
A
VAL
57
n
57
VAL
57
A
ARG
58
n
58
ARG
58
A
GLN
59
n
59
GLN
59
A
TYR
60
n
60
TYR
60
A
ASP
61
n
61
ASP
61
A
GLN
62
n
62
GLN
62
A
ILE
63
n
63
ILE
63
A
LEU
64
n
64
LEU
64
A
VAL
65
n
65
VAL
65
A
GLU
66
n
66
GLU
66
A
ILE
67
n
67
ILE
67
A
CYS
68
n
68
CYS
68
A
GLY
69
n
69
GLY
69
A
HIS
70
n
70
HIS
70
A
LYS
71
n
71
LYS
71
A
VAL
72
n
72
VAL
72
A
ILE
73
n
73
ILE
73
A
GLY
74
n
74
GLY
74
A
THR
75
n
75
THR
75
A
VAL
76
n
76
VAL
76
A
LEU
77
n
77
LEU
77
A
VAL
78
n
78
VAL
78
A
GLY
79
n
79
GLY
79
A
PRO
80
n
80
PRO
80
A
THR
81
n
81
THR
81
A
PRO
82
n
82
PRO
82
A
ALA
83
n
83
ALA
83
A
ASN
84
n
84
ASN
84
A
ILE
85
n
85
ILE
85
A
ILE
86
n
86
ILE
86
A
GLY
87
n
87
GLY
87
A
ARG
88
n
88
ARG
88
A
ASN
89
n
89
ASN
89
A
LEU
90
n
90
LEU
90
A
LEU
91
n
91
LEU
91
A
THR
92
n
92
THR
92
A
GLN
93
n
93
GLN
93
A
ILE
94
n
94
ILE
94
A
GLY
95
n
95
GLY
95
A
CYS
96
n
96
CYS
96
A
THR
97
n
97
THR
97
A
LEU
98
n
98
LEU
98
A
ASN
99
n
99
ASN
99
A
PHE
100
n
100
PHE
100
A
PRO
1
n
1
PRO
1
B
GLN
2
n
2
GLN
2
B
ILE
3
n
3
ILE
3
B
THR
4
n
4
THR
4
B
LEU
5
n
5
LEU
5
B
TRP
6
n
6
TRP
6
B
GLN
7
n
7
GLN
7
B
ARG
8
n
8
ARG
8
B
PRO
9
n
9
PRO
9
B
PHE
10
n
10
PHE
10
B
VAL
11
n
11
VAL
11
B
THR
12
n
12
THR
12
B
VAL
13
n
13
VAL
13
B
LYS
14
n
14
LYS
14
B
ILE
15
n
15
ILE
15
B
ALA
16
n
16
ALA
16
B
GLY
17
n
17
GLY
17
B
GLN
18
n
18
GLN
18
B
LEU
19
n
19
LEU
19
B
MET
20
n
20
MET
20
B
GLU
21
n
21
GLU
21
B
ALA
22
n
22
ALA
22
B
LEU
23
n
23
LEU
23
B
LEU
24
n
24
LEU
24
B
ASP
25
n
25
ASP
25
B
THR
26
n
26
THR
26
B
GLY
27
n
27
GLY
27
B
ALA
28
n
28
ALA
28
B
ASP
29
n
29
ASP
29
B
ASP
30
n
30
ASP
30
B
THR
31
n
31
THR
31
B
ILE
32
n
32
ILE
32
B
LEU
33
n
33
LEU
33
B
GLU
34
n
34
GLU
34
B
GLU
35
n
35
GLU
35
B
GLU
36
n
36
GLU
36
B
MET
37
n
37
MET
37
B
SER
38
n
38
SER
38
B
LEU
39
n
39
LEU
39
B
PRO
40
n
40
PRO
40
B
GLY
41
n
41
GLY
41
B
ARG
42
n
42
ARG
42
B
TRP
43
n
43
TRP
43
B
THR
44
n
44
THR
44
B
PRO
45
n
45
PRO
45
B
LYS
46
n
46
LYS
46
B
VAL
47
n
47
VAL
47
B
VAL
48
n
48
VAL
48
B
GLY
49
n
49
GLY
49
B
GLY
50
n
50
GLY
50
B
ILE
51
n
51
ILE
51
B
GLY
52
n
52
GLY
52
B
GLY
53
n
53
GLY
53
B
PHE
54
n
54
PHE
54
B
MET
55
n
55
MET
55
B
LYS
56
n
56
LYS
56
B
VAL
57
n
57
VAL
57
B
ARG
58
n
58
ARG
58
B
GLN
59
n
59
GLN
59
B
TYR
60
n
60
TYR
60
B
ASP
61
n
61
ASP
61
B
GLN
62
n
62
GLN
62
B
ILE
63
n
63
ILE
63
B
LEU
64
n
64
LEU
64
B
VAL
65
n
65
VAL
65
B
GLU
66
n
66
GLU
66
B
ILE
67
n
67
ILE
67
B
CYS
68
n
68
CYS
68
B
GLY
69
n
69
GLY
69
B
HIS
70
n
70
HIS
70
B
LYS
71
n
71
LYS
71
B
VAL
72
n
72
VAL
72
B
ILE
73
n
73
ILE
73
B
GLY
74
n
74
GLY
74
B
THR
75
n
75
THR
75
B
VAL
76
n
76
VAL
76
B
LEU
77
n
77
LEU
77
B
VAL
78
n
78
VAL
78
B
GLY
79
n
79
GLY
79
B
PRO
80
n
80
PRO
80
B
THR
81
n
81
THR
81
B
PRO
82
n
82
PRO
82
B
ALA
83
n
83
ALA
83
B
ASN
84
n
84
ASN
84
B
ILE
85
n
85
ILE
85
B
ILE
86
n
86
ILE
86
B
GLY
87
n
87
GLY
87
B
ARG
88
n
88
ARG
88
B
ASN
89
n
89
ASN
89
B
LEU
90
n
90
LEU
90
B
LEU
91
n
91
LEU
91
B
THR
92
n
92
THR
92
B
GLN
93
n
93
GLN
93
B
ILE
94
n
94
ILE
94
B
GLY
95
n
95
GLY
95
B
CYS
96
n
96
CYS
96
B
THR
97
n
97
THR
97
B
LEU
98
n
98
LEU
98
B
ASN
99
n
99
ASN
99
B
PHE
100
n
100
PHE
100
B
1.8754
-0.7516
0.6451
2.0227
-1.0000
8.4312
-0.0558
-0.0180
0.1535
0.0145
0.0921
-0.1298
-0.5691
-0.1770
-0.0363
-0.1529
-0.0718
0.0044
-0.0879
-0.0171
-0.1768
refined
-12.9170
29.3410
2.1040
X-RAY DIFFRACTION
1.1160
-0.1762
0.2454
2.7799
1.4034
10.6813
0.0113
-0.0752
-0.0026
-0.1218
0.0144
0.1864
-0.4087
-0.4675
-0.0257
-0.1797
-0.0494
-0.0058
-0.0797
0.0143
-0.1809
refined
-18.8890
25.9080
-2.1720
X-RAY DIFFRACTION
3.0822
2.2680
2.3884
3.0214
0.9410
3.4654
-0.0015
0.0010
-0.1039
0.1409
0.0650
-0.1774
0.1530
-0.1048
-0.0635
-0.1687
-0.0371
-0.0255
-0.1224
-0.0232
-0.1619
refined
-4.1400
25.7520
9.4640
X-RAY DIFFRACTION
4.7798
1.1274
1.6842
0.9033
1.5727
3.0912
0.0828
0.0763
-0.2392
-0.0505
-0.0455
-0.0258
0.0001
0.1899
-0.0374
-0.1664
-0.0356
-0.0299
-0.1217
-0.0140
-0.1646
refined
-20.2350
16.4290
-9.4080
X-RAY DIFFRACTION
1.6728
1.4808
-2.7089
9.0723
6.4813
17.4632
0.0568
-0.0809
-0.5418
1.0637
-0.1613
-0.6100
1.2731
0.2551
0.1044
0.0675
-0.0175
-0.1634
-0.0456
0.0108
0.0335
refined
-1.7380
14.5120
13.7150
X-RAY DIFFRACTION
8.1372
-2.5462
3.6868
2.3727
-5.3723
17.3069
0.3754
0.8975
-0.8424
-0.2051
-0.4668
-0.1371
0.8693
0.9537
0.0914
-0.0168
0.0301
-0.0846
0.0468
-0.1453
0.0344
refined
-11.6770
8.7230
-13.5120
X-RAY DIFFRACTION
A
1
A
1
A
9
A
9
X-RAY DIFFRACTION
1
A
87
A
87
A
100
A
100
X-RAY DIFFRACTION
1
B
1
B
1
B
9
B
9
X-RAY DIFFRACTION
2
B
89
B
89
B
100
B
100
X-RAY DIFFRACTION
2
A
10
A
10
A
32
A
32
X-RAY DIFFRACTION
3
A
64
A
64
A
86
A
86
X-RAY DIFFRACTION
3
B
10
B
10
B
32
B
32
X-RAY DIFFRACTION
4
B
64
B
64
B
86
B
86
X-RAY DIFFRACTION
4
A
33
A
33
A
63
A
63
X-RAY DIFFRACTION
5
B
33
B
33
B
63
B
63
X-RAY DIFFRACTION
6
author_and_software_defined_assembly
PISA
2
dimeric
5790
-55
9330
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ILE
3
A
N
ILE
3
B
O
LEU
98
B
O
LEU
98
B
O
ASN
99
B
O
ASN
99
A
N
THR
97
A
N
THR
97
A
N
LEU
98
A
N
LEU
98
B
O
ILE
3
B
O
ILE
3
A
N
LYS
46
A
N
LYS
46
A
O
VAL
57
A
O
VAL
57
A
N
VAL
65
A
N
VAL
65
A
O
VAL
72
A
O
VAL
72
A
O
LEU
77
A
O
LEU
77
A
N
LEU
33
A
N
LEU
33
A
N
ILE
32
A
N
ILE
32
A
O
ILE
85
A
O
ILE
85
A
O
ILE
86
A
O
ILE
86
A
N
LEU
23
A
N
LEU
23
A
O
MET
20
A
O
MET
20
A
N
VAL
13
A
N
VAL
13
A
N
LYS
14
A
N
LYS
14
A
O
GLU
66
A
O
GLU
66
B
N
LYS
46
B
N
LYS
46
B
O
VAL
57
B
O
VAL
57
B
N
VAL
65
B
N
VAL
65
B
O
VAL
72
B
O
VAL
72
B
O
LEU
77
B
O
LEU
77
B
N
LEU
33
B
N
LEU
33
B
N
ILE
32
B
N
ILE
32
B
O
ILE
85
B
O
ILE
85
B
O
ILE
86
B
O
ILE
86
B
N
LEU
23
B
N
LEU
23
B
O
MET
20
B
O
MET
20
B
N
VAL
13
B
N
VAL
13
B
N
LYS
14
B
N
LYS
14
B
O
GLU
66
B
O
GLU
66
35.778
-0.03
-0.01
0.00
-0.03
0.00
0.04
0.962
0.932
0.24869
0.19138
0.19523
1.80
29.09
1212
15673
7.2
99.31
6.732
0.109
RANDOM
LIKELY RESIDUAL
1
THROUGHOUT
0
0
SAD
0.166
0.157
0.80
0.80
1.20
PDB entry 1U8G
MAXIMUM LIKELIHOOD
BABINET MODEL WITH MASK
1.80
29.09
145
1731
58
0
1528
0.011
0.022
1724
1.385
2.027
2347
5.533
5.000
208
39.692
24.688
64
12.737
15.000
283
17.014
15.000
8
0.095
0.200
274
0.005
0.020
1266
0.214
0.200
833
0.316
0.200
1177
0.133
0.200
112
0.245
0.200
45
0.143
0.200
9
0.896
1.500
1042
1.352
2.000
1652
1.714
3.000
773
2.651
4.500
691
1
A
1
398
X-RAY DIFFRACTION
tight positional
0.02
0.05
2
A
2
46
X-RAY DIFFRACTION
tight positional
0.01
0.05
1
A
1
381
X-RAY DIFFRACTION
medium positional
0.34
0.50
1
A
1
398
X-RAY DIFFRACTION
tight thermal
0.17
0.50
2
A
2
46
X-RAY DIFFRACTION
tight thermal
0.04
0.50
1
A
1
381
X-RAY DIFFRACTION
medium thermal
0.68
2.00
0.285
0.24
1.847
84
1096
20
94.25
30.5
1.8
50
2RKG
17138
16989
2.0
0.04
1
34.8
5.5
99.1
1.80
1.83
2.8
0.36
1
4.1
94.1
data collection
HKL-3000
phasing
MOLREP
refinement
REFMAC
5.2
data reduction
HKL-3000
data scaling
HKL-3000
N
HIV-1 PR resistant mutant + LPV
1
N
N
1
N
N
2
N
N
3
N
N
2
N
N
4
N
N
4
N
N
A
GLY
87
A
GLY
87
HELX_P
A
THR
92
A
THR
92
1
1
6
A
GLN
93
A
GLN
93
HELX_P
A
GLY
95
A
GLY
95
5
2
3
B
GLY
87
B
GLY
87
HELX_P
B
THR
92
B
THR
92
1
3
6
B
GLN
93
B
GLN
93
HELX_P
B
GLY
95
B
GLY
95
5
4
3
HYDROLASE
resistence, insertion, HYDROLASE
A
B
B
A
PRO
1
A
PRO
1
A
PHE
100
A
PHE
100
2
B
PRO
1
B
PRO
1
B
PHE
100
B
PHE
100
2
B
AB1
501
D
AB1
B
AB1
501
D
AB1
1
A0F7J4_9HIV1
UNP
1
1
A0F7J4
PQITLWQRPFVTIKIGGQLKEALLDTGADDTILEEMNLPGRWTPKIVGGIGGFLKVRQYDQIPVEICGHKVIGTVLVGPT
PANIIGRNLLTQLGCTLNF
1
99
2RKG
1
100
A0F7J4
A
1
1
100
1
99
2RKG
1
100
A0F7J4
B
1
1
100
1
ILE
engineered mutation
VAL
13
2RKG
A
A0F7J4
UNP
13
13
1
GLY
engineered mutation
ALA
16
2RKG
A
A0F7J4
UNP
16
16
1
LYS
engineered mutation
MET
20
2RKG
A
A0F7J4
UNP
20
20
1
insertion
GLU
34
2RKG
A
A0F7J4
UNP
34
1
ASN
engineered mutation
SER
38
2RKG
A
A0F7J4
UNP
37
38
1
ILE
engineered mutation
VAL
47
2RKG
A
A0F7J4
UNP
46
47
1
LEU
engineered mutation
MET
55
2RKG
A
A0F7J4
UNP
54
55
1
PRO
engineered mutation
LEU
64
2RKG
A
A0F7J4
UNP
63
64
1
LEU
engineered mutation
ILE
94
2RKG
A
A0F7J4
UNP
93
94
2
ILE
engineered mutation
VAL
13
2RKG
B
A0F7J4
UNP
13
13
2
GLY
engineered mutation
ALA
16
2RKG
B
A0F7J4
UNP
16
16
2
LYS
engineered mutation
MET
20
2RKG
B
A0F7J4
UNP
20
20
2
insertion
GLU
34
2RKG
B
A0F7J4
UNP
34
2
ASN
engineered mutation
SER
38
2RKG
B
A0F7J4
UNP
37
38
2
ILE
engineered mutation
VAL
47
2RKG
B
A0F7J4
UNP
46
47
2
LEU
engineered mutation
MET
55
2RKG
B
A0F7J4
UNP
54
55
2
PRO
engineered mutation
LEU
64
2RKG
B
A0F7J4
UNP
63
64
2
LEU
engineered mutation
ILE
94
2RKG
B
A0F7J4
UNP
93
94
4
8
8
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
parallel
anti-parallel
anti-parallel
A
GLN
2
A
GLN
2
A
THR
4
A
THR
4
B
THR
97
B
THR
97
B
ASN
99
B
ASN
99
A
THR
97
A
THR
97
A
ASN
99
A
ASN
99
B
GLN
2
B
GLN
2
B
THR
4
B
THR
4
A
THR
44
A
THR
44
A
GLY
49
A
GLY
49
A
PHE
54
A
PHE
54
A
ILE
67
A
ILE
67
A
HIS
70
A
HIS
70
A
VAL
78
A
VAL
78
A
ILE
32
A
ILE
32
A
LEU
33
A
LEU
33
A
ILE
85
A
ILE
85
A
ILE
86
A
ILE
86
A
GLN
18
A
GLN
18
A
LEU
24
A
LEU
24
A
PHE
10
A
PHE
10
A
ILE
15
A
ILE
15
A
PHE
54
A
PHE
54
A
ILE
67
A
ILE
67
B
THR
44
B
THR
44
B
GLY
50
B
GLY
50
B
GLY
53
B
GLY
53
B
ILE
67
B
ILE
67
B
HIS
70
B
HIS
70
B
VAL
78
B
VAL
78
B
ILE
32
B
ILE
32
B
LEU
33
B
LEU
33
B
ILE
85
B
ILE
85
B
ILE
86
B
ILE
86
B
GLN
18
B
GLN
18
B
LEU
24
B
LEU
24
B
PHE
10
B
PHE
10
B
ILE
15
B
ILE
15
B
GLY
53
B
GLY
53
B
ILE
67
B
ILE
67
BINDING SITE FOR RESIDUE AB1 B 501
B
AB1
501
Software
25
BINDING SITE FOR RESIDUE GOL B 1001
B
GOL
1001
Software
4
BINDING SITE FOR RESIDUE GOL A 1002
A
GOL
1002
Software
4
A
ASP
25
A
ASP
25
25
1_555
A
GLY
27
A
GLY
27
25
1_555
A
ALA
28
A
ALA
28
25
1_555
A
ASP
29
A
ASP
29
25
1_555
A
ASP
30
A
ASP
30
25
1_555
A
GLY
49
A
GLY
49
25
1_555
A
GLY
50
A
GLY
50
25
1_555
A
ILE
51
A
ILE
51
25
1_555
A
PRO
82
A
PRO
82
25
1_555
A
HOH
1005
F
HOH
25
1_555
A
HOH
1064
F
HOH
25
1_555
B
ASP
25
B
ASP
25
25
1_555
B
GLY
27
B
GLY
27
25
1_555
B
ALA
28
B
ALA
28
25
1_555
B
ASP
29
B
ASP
29
25
1_555
B
ASP
30
B
ASP
30
25
1_555
B
GLY
49
B
GLY
49
25
1_555
B
GLY
50
B
GLY
50
25
1_555
B
ILE
51
B
ILE
51
25
1_555
B
PRO
82
B
PRO
82
25
1_555
B
HOH
1006
G
HOH
25
1_555
B
HOH
1010
G
HOH
25
1_555
B
HOH
1063
G
HOH
25
1_555
B
HOH
1064
G
HOH
25
1_555
B
HOH
1077
G
HOH
25
1_555
A
TRP
6
A
TRP
6
4
1_555
B
ASP
29
B
ASP
29
4
1_555
B
ARG
88
B
ARG
88
4
1_555
B
ASN
89
B
ASN
89
4
1_555
A
ASP
29
A
ASP
29
4
1_555
A
ARG
88
A
ARG
88
4
1_555
A
ASN
89
A
ASN
89
4
1_555
B
TRP
6
B
TRP
6
4
1_555
169
P 61