0.007781
0.004492
0.000000
0.000000
0.008984
0.000000
0.000000
0.000000
0.008858
0.00000
0.00000
0.00000
Thompson, A.A.
Peersen, O.B.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
128.526
128.526
112.891
C2 H4 O2
60.052
ACETIC ACID
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C10 H16 N5 O13 P3
507.181
ADENOSINE-5'-TRIPHOSPHATE
non-polymer
C5 H12 As N O2 S
225.141
n
S-(DIMETHYLARSENIC)CYSTEINE
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Na 1
22.990
SODIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
C
N
2
N
O
N
3
N
O
N
4
N
C
N
5
N
H
N
6
N
H
N
7
N
H
N
8
N
H
N
9
N
N
N
10
S
C
N
11
N
C
N
12
N
O
N
13
N
C
N
14
N
O
N
15
N
H
N
16
N
H
N
17
N
H
N
18
N
H
N
19
N
H
N
20
N
H
N
21
N
H
N
22
N
N
N
23
S
C
N
24
N
C
N
25
N
O
N
26
N
C
N
27
N
C
N
28
N
C
N
29
N
N
N
30
N
C
N
31
N
N
N
32
N
N
N
33
N
O
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
N
N
50
S
C
N
51
N
C
N
52
N
O
N
53
N
C
N
54
N
C
N
55
N
O
N
56
N
N
N
57
N
O
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
N
N
67
S
C
N
68
N
C
N
69
N
O
N
70
N
C
N
71
N
C
N
72
N
O
N
73
N
O
N
74
N
O
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
P
N
83
N
O
N
84
N
O
N
85
N
O
N
86
R
P
N
87
N
O
N
88
N
O
N
89
N
O
N
90
R
P
N
91
N
O
N
92
N
O
N
93
N
O
N
94
N
O
N
95
N
C
N
96
R
C
N
97
N
O
N
98
S
C
N
99
N
O
N
100
R
C
N
101
N
O
N
102
R
C
Y
103
N
N
Y
104
N
C
Y
105
N
N
Y
106
N
C
Y
107
N
C
N
108
N
N
Y
109
N
N
Y
110
N
C
Y
111
N
N
Y
112
N
C
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
N
N
130
R
C
N
131
N
C
N
132
N
C
N
133
N
O
N
134
N
O
N
135
N
S
N
136
N
AS
N
137
N
C
N
138
N
C
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
N
N
152
R
C
N
153
N
C
N
154
N
O
N
155
N
C
N
156
N
S
N
157
N
O
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
N
N
166
S
C
N
167
N
C
N
168
N
O
N
169
N
C
N
170
N
C
N
171
N
C
N
172
N
O
N
173
N
N
N
174
N
O
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
N
N
186
S
C
N
187
N
C
N
188
N
O
N
189
N
C
N
190
N
C
N
191
N
C
N
192
N
O
N
193
N
O
N
194
N
O
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
N
N
205
N
C
N
206
N
C
N
207
N
O
N
208
N
O
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
N
N
215
S
C
N
216
N
C
N
217
N
O
N
218
N
C
Y
219
N
C
Y
220
N
N
Y
221
N
C
Y
222
N
C
Y
223
N
N
N
224
N
O
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
O
N
236
N
H
N
237
N
H
N
238
N
N
N
239
S
C
N
240
N
C
N
241
N
O
N
242
S
C
N
243
N
C
N
244
N
C
N
245
N
C
N
246
N
O
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
N
N
261
S
C
N
262
N
C
N
263
N
O
N
264
N
C
N
265
N
C
N
266
N
C
N
267
N
C
N
268
N
O
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
N
N
283
S
C
N
284
N
C
N
285
N
O
N
286
N
C
N
287
N
C
N
288
N
C
N
289
N
C
N
290
N
N
N
291
N
O
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
N
N
308
S
C
N
309
N
C
N
310
N
O
N
311
N
C
N
312
N
C
N
313
N
S
N
314
N
C
N
315
N
O
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
NA
N
328
N
N
N
329
S
C
N
330
N
C
N
331
N
O
N
332
N
C
Y
333
N
C
Y
334
N
C
Y
335
N
C
Y
336
N
C
Y
337
N
C
Y
338
N
C
N
339
N
O
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
N
N
352
S
C
N
353
N
C
N
354
N
O
N
355
N
C
N
356
N
C
N
357
N
C
N
358
N
O
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
N
N
369
S
C
N
370
N
C
N
371
N
O
N
372
N
C
N
373
N
O
N
374
N
O
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
N
N
383
S
C
N
384
N
C
N
385
N
O
N
386
R
C
N
387
N
O
N
388
N
C
N
389
N
O
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
N
N
400
S
C
N
401
N
C
N
402
N
O
N
403
N
C
Y
404
N
C
Y
405
N
C
Y
406
N
C
Y
407
N
N
Y
408
N
C
Y
409
N
C
Y
410
N
C
Y
411
N
C
Y
412
N
C
N
413
N
O
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
N
N
427
S
C
N
428
N
C
N
429
N
O
N
430
N
C
Y
431
N
C
Y
432
N
C
Y
433
N
C
Y
434
N
C
Y
435
N
C
Y
436
N
C
N
437
N
O
N
438
N
O
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
N
N
451
S
C
N
452
N
C
N
453
N
O
N
454
N
C
N
455
N
C
N
456
N
C
N
457
N
O
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
1
N
doub
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
doub
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
doub
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
doub
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
doub
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
doub
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
doub
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
doub
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
doub
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
doub
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
doub
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
Y
111
N
sing
Y
112
N
sing
Y
113
N
doub
N
114
N
sing
Y
115
N
sing
Y
116
N
sing
Y
117
N
doub
N
118
N
sing
Y
119
N
doub
N
120
N
sing
N
121
N
sing
Y
122
N
sing
Y
123
N
doub
N
124
N
sing
Y
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
doub
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
doub
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
doub
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
doub
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
doub
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
doub
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
doub
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
Y
217
N
sing
Y
218
N
doub
Y
219
N
doub
N
220
N
sing
Y
221
N
sing
N
222
N
sing
Y
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
doub
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
doub
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
doub
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
doub
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
doub
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
Y
325
N
doub
Y
326
N
sing
Y
327
N
sing
N
328
N
sing
Y
329
N
doub
N
330
N
sing
Y
331
N
doub
N
332
N
sing
Y
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
doub
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
doub
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
doub
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
doub
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
Y
394
N
doub
Y
395
N
sing
Y
396
N
sing
N
397
N
sing
Y
398
N
doub
Y
399
N
sing
Y
400
N
sing
N
401
N
sing
Y
402
N
sing
Y
403
N
doub
N
404
N
sing
Y
405
N
doub
N
406
N
sing
Y
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
doub
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
Y
422
N
doub
Y
423
N
sing
Y
424
N
sing
N
425
N
sing
Y
426
N
doub
N
427
N
sing
Y
428
N
doub
N
429
N
sing
Y
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
doub
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
366
1459
1474
10.1016/j.jmb.2006.11.070
17223130
Stabilization of Poliovirus Polymerase by NTP Binding and Fingers-Thumb Interactions.
2007
10.2210/pdb2ily/pdb
pdb_00002ily
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
IMAGE PLATE
RIGAKU RAXIS IV
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU
52987.859
Poliovirus polymerase
2.7.7.48
RNA-directed RNA polymerase, residues 461-1748
L446D, R455D
1
man
polymer
22.990
SODIUM ION
1
syn
non-polymer
507.181
ADENOSINE-5'-TRIPHOSPHATE
1
syn
non-polymer
60.052
ACETIC ACID
7
syn
non-polymer
18.015
water
129
nat
water
no
yes
GEIQWMRPSKEVGYPIINAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDFEEAIFSKYVGNKITEVDEYMKEAVDH
YAGQLMSLDINTEQM(CAS)LEDAMYGTDGLEALDLSTSAGYPYVAMGKKKRDILNKQTRDTKEMQKLLDTYGINLPLVT
YVKDELRSKTKVEQGKSRLIEASSLNDSVAMRMAFGNLYAAFHKNPGVITGSAVG(CAS)DPDLFWSKIPVLMEEKLFAF
DYTGYDASLSPAWFEALKMVLEKIGFGDRVDYIDYLNHSHHLYKNKTY(CAS)VKGGMPSG(CAS)SGTSIFNSMINNLI
IRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADKSATFETVTWENVTFLKRFFRADEKY
PFLIHPVMPMKEIHESIRWTKDPRNTQDHVRSLCLLAWHNGEEEYNKFLAKIRSVPIGRALDLPEYSTLYDRWLDSF
GEIQWMRPSKEVGYPIINAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDFEEAIFSKYVGNKITEVDEYMKEAVDH
YAGQLMSLDINTEQMCLEDAMYGTDGLEALDLSTSAGYPYVAMGKKKRDILNKQTRDTKEMQKLLDTYGINLPLVTYVKD
ELRSKTKVEQGKSRLIEASSLNDSVAMRMAFGNLYAAFHKNPGVITGSAVGCDPDLFWSKIPVLMEEKLFAFDYTGYDAS
LSPAWFEALKMVLEKIGFGDRVDYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSMINNLIIRTLLLKTYKGIDLDH
LKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADKSATFETVTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHES
IRWTKDPRNTQDHVRSLCLLAWHNGEEEYNKFLAKIRSVPIGRALDLPEYSTLYDRWLDSF
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
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n
n
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n
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n
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n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Enterovirus
Poliovirus
Mahoney
Escherichia
sample
3D
12081
Human poliovirus 1
562
Escherichia coli
BL21(DE3)pLYSS
plasmid
pKKT7E
1
VAPOR DIFFUSION, HANGING DROP
7.0
sodium acetate, cacodylate, dtt, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 289K
289
database_2
struct_conn
struct_ref_seq_dif
struct_site
chem_comp_atom
chem_comp_bond
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Source and taxonomy
Version format compliance
Database references
Derived calculations
Data collection
Refinement description
1
0
2006-12-12
1
1
2008-05-01
1
2
2011-07-13
1
3
2021-10-20
1
4
2023-08-30
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
crystal structure of poliovirus polymerase complexed with GTP and Mg2+
crystal structure of apo poliovirus polymerase
Stabilization of Poliovirus Polymerase by NTP Binding and Fingers-Thumb Interactions
Stabilization of Poliovirus Polymerase by NTP Binding and Fingers-Thumb Interactions
Stabilization of Poliovirus Polymerase by NTP Binding and Fingers-Thumb Interactions
Stabilization of Poliovirus Polymerase by NTP Binding and Fingers-Thumb Interactions
Stabilization of Poliovirus Polymerase by NTP Binding and Fingers-Thumb Interactions
RCSB
Y
RCSB
2006-10-03
REL
REL
NA
SODIUM ION
ATP
ADENOSINE-5'-TRIPHOSPHATE
ACY
ACETIC ACID
HOH
water
1RA6
PDB ENTRY 1RA6
PDB
experimental model
NA
3001
2
NA
NA
3001
A
ATP
1001
3
ATP
ATP
1001
A
ACY
901
4
ACY
ACY
901
A
ACY
902
4
ACY
ACY
902
A
ACY
903
4
ACY
ACY
903
A
ACY
904
4
ACY
ACY
904
A
ACY
905
4
ACY
ACY
905
A
ACY
906
4
ACY
ACY
906
A
ACY
907
4
ACY
ACY
907
A
HOH
501
5
HOH
HOH
501
A
HOH
502
5
HOH
HOH
502
A
HOH
503
5
HOH
HOH
503
A
HOH
504
5
HOH
HOH
504
A
HOH
505
5
HOH
HOH
505
A
HOH
506
5
HOH
HOH
506
A
HOH
507
5
HOH
HOH
507
A
HOH
508
5
HOH
HOH
508
A
HOH
509
5
HOH
HOH
509
A
HOH
510
5
HOH
HOH
510
A
HOH
511
5
HOH
HOH
511
A
HOH
512
5
HOH
HOH
512
A
HOH
513
5
HOH
HOH
513
A
HOH
514
5
HOH
HOH
514
A
HOH
515
5
HOH
HOH
515
A
HOH
516
5
HOH
HOH
516
A
HOH
517
5
HOH
HOH
517
A
HOH
518
5
HOH
HOH
518
A
HOH
519
5
HOH
HOH
519
A
HOH
520
5
HOH
HOH
520
A
HOH
521
5
HOH
HOH
521
A
HOH
522
5
HOH
HOH
522
A
HOH
523
5
HOH
HOH
523
A
HOH
524
5
HOH
HOH
524
A
HOH
525
5
HOH
HOH
525
A
HOH
526
5
HOH
HOH
526
A
HOH
527
5
HOH
HOH
527
A
HOH
528
5
HOH
HOH
528
A
HOH
529
5
HOH
HOH
529
A
HOH
530
5
HOH
HOH
530
A
HOH
531
5
HOH
HOH
531
A
HOH
532
5
HOH
HOH
532
A
HOH
533
5
HOH
HOH
533
A
HOH
534
5
HOH
HOH
534
A
HOH
535
5
HOH
HOH
535
A
HOH
536
5
HOH
HOH
536
A
HOH
537
5
HOH
HOH
537
A
HOH
538
5
HOH
HOH
538
A
HOH
539
5
HOH
HOH
539
A
HOH
540
5
HOH
HOH
540
A
HOH
541
5
HOH
HOH
541
A
HOH
542
5
HOH
HOH
542
A
HOH
543
5
HOH
HOH
543
A
HOH
544
5
HOH
HOH
544
A
HOH
545
5
HOH
HOH
545
A
HOH
546
5
HOH
HOH
546
A
HOH
547
5
HOH
HOH
547
A
HOH
548
5
HOH
HOH
548
A
HOH
549
5
HOH
HOH
549
A
HOH
550
5
HOH
HOH
550
A
HOH
551
5
HOH
HOH
551
A
HOH
552
5
HOH
HOH
552
A
HOH
553
5
HOH
HOH
553
A
HOH
554
5
HOH
HOH
554
A
HOH
555
5
HOH
HOH
555
A
HOH
556
5
HOH
HOH
556
A
HOH
557
5
HOH
HOH
557
A
HOH
558
5
HOH
HOH
558
A
HOH
559
5
HOH
HOH
559
A
HOH
560
5
HOH
HOH
560
A
HOH
561
5
HOH
HOH
561
A
HOH
562
5
HOH
HOH
562
A
HOH
563
5
HOH
HOH
563
A
HOH
564
5
HOH
HOH
564
A
HOH
565
5
HOH
HOH
565
A
HOH
566
5
HOH
HOH
566
A
HOH
567
5
HOH
HOH
567
A
HOH
568
5
HOH
HOH
568
A
HOH
569
5
HOH
HOH
569
A
HOH
570
5
HOH
HOH
570
A
HOH
571
5
HOH
HOH
571
A
HOH
572
5
HOH
HOH
572
A
HOH
573
5
HOH
HOH
573
A
HOH
574
5
HOH
HOH
574
A
HOH
575
5
HOH
HOH
575
A
HOH
576
5
HOH
HOH
576
A
HOH
577
5
HOH
HOH
577
A
HOH
578
5
HOH
HOH
578
A
HOH
579
5
HOH
HOH
579
A
HOH
580
5
HOH
HOH
580
A
HOH
581
5
HOH
HOH
581
A
HOH
582
5
HOH
HOH
582
A
HOH
583
5
HOH
HOH
583
A
HOH
584
5
HOH
HOH
584
A
HOH
585
5
HOH
HOH
585
A
HOH
586
5
HOH
HOH
586
A
HOH
587
5
HOH
HOH
587
A
HOH
588
5
HOH
HOH
588
A
HOH
589
5
HOH
HOH
589
A
HOH
590
5
HOH
HOH
590
A
HOH
591
5
HOH
HOH
591
A
HOH
592
5
HOH
HOH
592
A
HOH
593
5
HOH
HOH
593
A
HOH
594
5
HOH
HOH
594
A
HOH
595
5
HOH
HOH
595
A
HOH
596
5
HOH
HOH
596
A
HOH
597
5
HOH
HOH
597
A
HOH
598
5
HOH
HOH
598
A
HOH
599
5
HOH
HOH
599
A
HOH
600
5
HOH
HOH
600
A
HOH
601
5
HOH
HOH
601
A
HOH
602
5
HOH
HOH
602
A
HOH
603
5
HOH
HOH
603
A
HOH
604
5
HOH
HOH
604
A
HOH
605
5
HOH
HOH
605
A
HOH
606
5
HOH
HOH
606
A
HOH
607
5
HOH
HOH
607
A
HOH
608
5
HOH
HOH
608
A
HOH
609
5
HOH
HOH
609
A
HOH
610
5
HOH
HOH
610
A
HOH
611
5
HOH
HOH
611
A
HOH
612
5
HOH
HOH
612
A
HOH
613
5
HOH
HOH
613
A
HOH
614
5
HOH
HOH
614
A
HOH
615
5
HOH
HOH
615
A
HOH
616
5
HOH
HOH
616
A
HOH
617
5
HOH
HOH
617
A
HOH
618
5
HOH
HOH
618
A
HOH
619
5
HOH
HOH
619
A
HOH
620
5
HOH
HOH
620
A
HOH
621
5
HOH
HOH
621
A
HOH
622
5
HOH
HOH
622
A
HOH
623
5
HOH
HOH
623
A
HOH
624
5
HOH
HOH
624
A
HOH
625
5
HOH
HOH
625
A
HOH
626
5
HOH
HOH
626
A
HOH
627
5
HOH
HOH
627
A
HOH
628
5
HOH
HOH
628
A
HOH
629
5
HOH
HOH
629
A
GLY
1
n
1
GLY
1
A
GLU
2
n
2
GLU
2
A
ILE
3
n
3
ILE
3
A
GLN
4
n
4
GLN
4
A
TRP
5
n
5
TRP
5
A
MET
6
n
6
MET
6
A
ARG
7
n
7
ARG
7
A
PRO
8
n
8
PRO
8
A
SER
9
n
9
SER
9
A
LYS
10
n
10
LYS
10
A
GLU
11
n
11
GLU
11
A
VAL
12
n
12
VAL
12
A
GLY
13
n
13
GLY
13
A
TYR
14
n
14
TYR
14
A
PRO
15
n
15
PRO
15
A
ILE
16
n
16
ILE
16
A
ILE
17
n
17
ILE
17
A
ASN
18
n
18
ASN
18
A
ALA
19
n
19
ALA
19
A
PRO
20
n
20
PRO
20
A
SER
21
n
21
SER
21
A
LYS
22
n
22
LYS
22
A
THR
23
n
23
THR
23
A
LYS
24
n
24
LYS
24
A
LEU
25
n
25
LEU
25
A
GLU
26
n
26
GLU
26
A
PRO
27
n
27
PRO
27
A
SER
28
n
28
SER
28
A
ALA
29
n
29
ALA
29
A
PHE
30
n
30
PHE
30
A
HIS
31
n
31
HIS
31
A
TYR
32
n
32
TYR
32
A
VAL
33
n
33
VAL
33
A
PHE
34
n
34
PHE
34
A
GLU
35
n
35
GLU
35
A
GLY
36
n
36
GLY
36
A
VAL
37
n
37
VAL
37
A
LYS
38
n
38
LYS
38
A
GLU
39
n
39
GLU
39
A
PRO
40
n
40
PRO
40
A
ALA
41
n
41
ALA
41
A
VAL
42
n
42
VAL
42
A
LEU
43
n
43
LEU
43
A
THR
44
n
44
THR
44
A
LYS
45
n
45
LYS
45
A
ASN
46
n
46
ASN
46
A
ASP
47
n
47
ASP
47
A
PRO
48
n
48
PRO
48
A
ARG
49
n
49
ARG
49
A
LEU
50
n
50
LEU
50
A
LYS
51
n
51
LYS
51
A
THR
52
n
52
THR
52
A
ASP
53
n
53
ASP
53
A
PHE
54
n
54
PHE
54
A
GLU
55
n
55
GLU
55
A
GLU
56
n
56
GLU
56
A
ALA
57
n
57
ALA
57
A
ILE
58
n
58
ILE
58
A
PHE
59
n
59
PHE
59
A
SER
60
n
60
SER
60
A
LYS
61
n
61
LYS
61
A
TYR
62
n
62
TYR
62
A
VAL
63
n
63
VAL
63
A
GLY
64
n
64
GLY
64
A
ASN
65
n
65
ASN
65
A
LYS
66
n
66
LYS
66
A
ILE
67
n
67
ILE
67
A
THR
68
n
68
THR
68
A
GLU
69
n
69
GLU
69
A
VAL
70
n
70
VAL
70
A
ASP
71
n
71
ASP
71
A
GLU
72
n
72
GLU
72
A
TYR
73
n
73
TYR
73
A
MET
74
n
74
MET
74
A
LYS
75
n
75
LYS
75
A
GLU
76
n
76
GLU
76
A
ALA
77
n
77
ALA
77
A
VAL
78
n
78
VAL
78
A
ASP
79
n
79
ASP
79
A
HIS
80
n
80
HIS
80
A
TYR
81
n
81
TYR
81
A
ALA
82
n
82
ALA
82
A
GLY
83
n
83
GLY
83
A
GLN
84
n
84
GLN
84
A
LEU
85
n
85
LEU
85
A
MET
86
n
86
MET
86
A
SER
87
n
87
SER
87
A
LEU
88
n
88
LEU
88
A
ASP
89
n
89
ASP
89
A
ILE
90
n
90
ILE
90
A
ASN
91
n
91
ASN
91
A
THR
92
n
92
THR
92
A
GLU
93
n
93
GLU
93
A
GLN
94
n
94
GLN
94
A
MET
95
n
95
MET
95
A
CAS
96
n
96
CAS
96
A
LEU
97
n
97
LEU
97
A
GLU
98
n
98
GLU
98
A
ASP
99
n
99
ASP
99
A
ALA
100
n
100
ALA
100
A
MET
101
n
101
MET
101
A
TYR
102
n
102
TYR
102
A
GLY
103
n
103
GLY
103
A
THR
104
n
104
THR
104
A
ASP
105
n
105
ASP
105
A
GLY
106
n
106
GLY
106
A
LEU
107
n
107
LEU
107
A
GLU
108
n
108
GLU
108
A
ALA
109
n
109
ALA
109
A
LEU
110
n
110
LEU
110
A
ASP
111
n
111
ASP
111
A
LEU
112
n
112
LEU
112
A
SER
113
n
113
SER
113
A
THR
114
n
114
THR
114
A
SER
115
n
115
SER
115
A
ALA
116
n
116
ALA
116
A
GLY
117
n
117
GLY
117
A
TYR
118
n
118
TYR
118
A
PRO
119
n
119
PRO
119
A
TYR
120
n
120
TYR
120
A
VAL
121
n
121
VAL
121
A
ALA
122
n
122
ALA
122
A
MET
123
n
123
MET
123
A
GLY
124
n
124
GLY
124
A
LYS
125
n
125
LYS
125
A
LYS
126
n
126
LYS
126
A
LYS
127
n
127
LYS
127
A
ARG
128
n
128
ARG
128
A
ASP
129
n
129
ASP
129
A
ILE
130
n
130
ILE
130
A
LEU
131
n
131
LEU
131
A
ASN
132
n
132
ASN
132
A
LYS
133
n
133
LYS
133
A
GLN
134
n
134
GLN
134
A
THR
135
n
135
THR
135
A
ARG
136
n
136
ARG
136
A
ASP
137
n
137
ASP
137
A
THR
138
n
138
THR
138
A
LYS
139
n
139
LYS
139
A
GLU
140
n
140
GLU
140
A
MET
141
n
141
MET
141
A
GLN
142
n
142
GLN
142
A
LYS
143
n
143
LYS
143
A
LEU
144
n
144
LEU
144
A
LEU
145
n
145
LEU
145
A
ASP
146
n
146
ASP
146
A
THR
147
n
147
THR
147
A
TYR
148
n
148
TYR
148
A
GLY
149
n
149
GLY
149
A
ILE
150
n
150
ILE
150
A
ASN
151
n
151
ASN
151
A
LEU
152
n
152
LEU
152
A
PRO
153
n
153
PRO
153
A
LEU
154
n
154
LEU
154
A
VAL
155
n
155
VAL
155
A
THR
156
n
156
THR
156
A
TYR
157
n
157
TYR
157
A
VAL
158
n
158
VAL
158
A
LYS
159
n
159
LYS
159
A
ASP
160
n
160
ASP
160
A
GLU
161
n
161
GLU
161
A
LEU
162
n
162
LEU
162
A
ARG
163
n
163
ARG
163
A
SER
164
n
164
SER
164
A
LYS
165
n
165
LYS
165
A
THR
166
n
166
THR
166
A
LYS
167
n
167
LYS
167
A
VAL
168
n
168
VAL
168
A
GLU
169
n
169
GLU
169
A
GLN
170
n
170
GLN
170
A
GLY
171
n
171
GLY
171
A
LYS
172
n
172
LYS
172
A
SER
173
n
173
SER
173
A
ARG
174
n
174
ARG
174
A
LEU
175
n
175
LEU
175
A
ILE
176
n
176
ILE
176
A
GLU
177
n
177
GLU
177
A
ALA
178
n
178
ALA
178
A
SER
179
n
179
SER
179
A
SER
180
n
180
SER
180
A
LEU
181
n
181
LEU
181
A
ASN
182
n
182
ASN
182
A
ASP
183
n
183
ASP
183
A
SER
184
n
184
SER
184
A
VAL
185
n
185
VAL
185
A
ALA
186
n
186
ALA
186
A
MET
187
n
187
MET
187
A
ARG
188
n
188
ARG
188
A
MET
189
n
189
MET
189
A
ALA
190
n
190
ALA
190
A
PHE
191
n
191
PHE
191
A
GLY
192
n
192
GLY
192
A
ASN
193
n
193
ASN
193
A
LEU
194
n
194
LEU
194
A
TYR
195
n
195
TYR
195
A
ALA
196
n
196
ALA
196
A
ALA
197
n
197
ALA
197
A
PHE
198
n
198
PHE
198
A
HIS
199
n
199
HIS
199
A
LYS
200
n
200
LYS
200
A
ASN
201
n
201
ASN
201
A
PRO
202
n
202
PRO
202
A
GLY
203
n
203
GLY
203
A
VAL
204
n
204
VAL
204
A
ILE
205
n
205
ILE
205
A
THR
206
n
206
THR
206
A
GLY
207
n
207
GLY
207
A
SER
208
n
208
SER
208
A
ALA
209
n
209
ALA
209
A
VAL
210
n
210
VAL
210
A
GLY
211
n
211
GLY
211
A
CAS
212
n
212
CAS
212
A
ASP
213
n
213
ASP
213
A
PRO
214
n
214
PRO
214
A
ASP
215
n
215
ASP
215
A
LEU
216
n
216
LEU
216
A
PHE
217
n
217
PHE
217
A
TRP
218
n
218
TRP
218
A
SER
219
n
219
SER
219
A
LYS
220
n
220
LYS
220
A
ILE
221
n
221
ILE
221
A
PRO
222
n
222
PRO
222
A
VAL
223
n
223
VAL
223
A
LEU
224
n
224
LEU
224
A
MET
225
n
225
MET
225
A
GLU
226
n
226
GLU
226
A
GLU
227
n
227
GLU
227
A
LYS
228
n
228
LYS
228
A
LEU
229
n
229
LEU
229
A
PHE
230
n
230
PHE
230
A
ALA
231
n
231
ALA
231
A
PHE
232
n
232
PHE
232
A
ASP
233
n
233
ASP
233
A
TYR
234
n
234
TYR
234
A
THR
235
n
235
THR
235
A
GLY
236
n
236
GLY
236
A
TYR
237
n
237
TYR
237
A
ASP
238
n
238
ASP
238
A
ALA
239
n
239
ALA
239
A
SER
240
n
240
SER
240
A
LEU
241
n
241
LEU
241
A
SER
242
n
242
SER
242
A
PRO
243
n
243
PRO
243
A
ALA
244
n
244
ALA
244
A
TRP
245
n
245
TRP
245
A
PHE
246
n
246
PHE
246
A
GLU
247
n
247
GLU
247
A
ALA
248
n
248
ALA
248
A
LEU
249
n
249
LEU
249
A
LYS
250
n
250
LYS
250
A
MET
251
n
251
MET
251
A
VAL
252
n
252
VAL
252
A
LEU
253
n
253
LEU
253
A
GLU
254
n
254
GLU
254
A
LYS
255
n
255
LYS
255
A
ILE
256
n
256
ILE
256
A
GLY
257
n
257
GLY
257
A
PHE
258
n
258
PHE
258
A
GLY
259
n
259
GLY
259
A
ASP
260
n
260
ASP
260
A
ARG
261
n
261
ARG
261
A
VAL
262
n
262
VAL
262
A
ASP
263
n
263
ASP
263
A
TYR
264
n
264
TYR
264
A
ILE
265
n
265
ILE
265
A
ASP
266
n
266
ASP
266
A
TYR
267
n
267
TYR
267
A
LEU
268
n
268
LEU
268
A
ASN
269
n
269
ASN
269
A
HIS
270
n
270
HIS
270
A
SER
271
n
271
SER
271
A
HIS
272
n
272
HIS
272
A
HIS
273
n
273
HIS
273
A
LEU
274
n
274
LEU
274
A
TYR
275
n
275
TYR
275
A
LYS
276
n
276
LYS
276
A
ASN
277
n
277
ASN
277
A
LYS
278
n
278
LYS
278
A
THR
279
n
279
THR
279
A
TYR
280
n
280
TYR
280
A
CAS
281
n
281
CAS
281
A
VAL
282
n
282
VAL
282
A
LYS
283
n
283
LYS
283
A
GLY
284
n
284
GLY
284
A
GLY
285
n
285
GLY
285
A
MET
286
n
286
MET
286
A
PRO
287
n
287
PRO
287
A
SER
288
n
288
SER
288
A
GLY
289
n
289
GLY
289
A
CAS
290
n
290
CAS
290
A
SER
291
n
291
SER
291
A
GLY
292
n
292
GLY
292
A
THR
293
n
293
THR
293
A
SER
294
n
294
SER
294
A
ILE
295
n
295
ILE
295
A
PHE
296
n
296
PHE
296
A
ASN
297
n
297
ASN
297
A
SER
298
n
298
SER
298
A
MET
299
n
299
MET
299
A
ILE
300
n
300
ILE
300
A
ASN
301
n
301
ASN
301
A
ASN
302
n
302
ASN
302
A
LEU
303
n
303
LEU
303
A
ILE
304
n
304
ILE
304
A
ILE
305
n
305
ILE
305
A
ARG
306
n
306
ARG
306
A
THR
307
n
307
THR
307
A
LEU
308
n
308
LEU
308
A
LEU
309
n
309
LEU
309
A
LEU
310
n
310
LEU
310
A
LYS
311
n
311
LYS
311
A
THR
312
n
312
THR
312
A
TYR
313
n
313
TYR
313
A
LYS
314
n
314
LYS
314
A
GLY
315
n
315
GLY
315
A
ILE
316
n
316
ILE
316
A
ASP
317
n
317
ASP
317
A
LEU
318
n
318
LEU
318
A
ASP
319
n
319
ASP
319
A
HIS
320
n
320
HIS
320
A
LEU
321
n
321
LEU
321
A
LYS
322
n
322
LYS
322
A
MET
323
n
323
MET
323
A
ILE
324
n
324
ILE
324
A
ALA
325
n
325
ALA
325
A
TYR
326
n
326
TYR
326
A
GLY
327
n
327
GLY
327
A
ASP
328
n
328
ASP
328
A
ASP
329
n
329
ASP
329
A
VAL
330
n
330
VAL
330
A
ILE
331
n
331
ILE
331
A
ALA
332
n
332
ALA
332
A
SER
333
n
333
SER
333
A
TYR
334
n
334
TYR
334
A
PRO
335
n
335
PRO
335
A
HIS
336
n
336
HIS
336
A
GLU
337
n
337
GLU
337
A
VAL
338
n
338
VAL
338
A
ASP
339
n
339
ASP
339
A
ALA
340
n
340
ALA
340
A
SER
341
n
341
SER
341
A
LEU
342
n
342
LEU
342
A
LEU
343
n
343
LEU
343
A
ALA
344
n
344
ALA
344
A
GLN
345
n
345
GLN
345
A
SER
346
n
346
SER
346
A
GLY
347
n
347
GLY
347
A
LYS
348
n
348
LYS
348
A
ASP
349
n
349
ASP
349
A
TYR
350
n
350
TYR
350
A
GLY
351
n
351
GLY
351
A
LEU
352
n
352
LEU
352
A
THR
353
n
353
THR
353
A
MET
354
n
354
MET
354
A
THR
355
n
355
THR
355
A
PRO
356
n
356
PRO
356
A
ALA
357
n
357
ALA
357
A
ASP
358
n
358
ASP
358
A
LYS
359
n
359
LYS
359
A
SER
360
n
360
SER
360
A
ALA
361
n
361
ALA
361
A
THR
362
n
362
THR
362
A
PHE
363
n
363
PHE
363
A
GLU
364
n
364
GLU
364
A
THR
365
n
365
THR
365
A
VAL
366
n
366
VAL
366
A
THR
367
n
367
THR
367
A
TRP
368
n
368
TRP
368
A
GLU
369
n
369
GLU
369
A
ASN
370
n
370
ASN
370
A
VAL
371
n
371
VAL
371
A
THR
372
n
372
THR
372
A
PHE
373
n
373
PHE
373
A
LEU
374
n
374
LEU
374
A
LYS
375
n
375
LYS
375
A
ARG
376
n
376
ARG
376
A
PHE
377
n
377
PHE
377
A
PHE
378
n
378
PHE
378
A
ARG
379
n
379
ARG
379
A
ALA
380
n
380
ALA
380
A
ASP
381
n
381
ASP
381
A
GLU
382
n
382
GLU
382
A
LYS
383
n
383
LYS
383
A
TYR
384
n
384
TYR
384
A
PRO
385
n
385
PRO
385
A
PHE
386
n
386
PHE
386
A
LEU
387
n
387
LEU
387
A
ILE
388
n
388
ILE
388
A
HIS
389
n
389
HIS
389
A
PRO
390
n
390
PRO
390
A
VAL
391
n
391
VAL
391
A
MET
392
n
392
MET
392
A
PRO
393
n
393
PRO
393
A
MET
394
n
394
MET
394
A
LYS
395
n
395
LYS
395
A
GLU
396
n
396
GLU
396
A
ILE
397
n
397
ILE
397
A
HIS
398
n
398
HIS
398
A
GLU
399
n
399
GLU
399
A
SER
400
n
400
SER
400
A
ILE
401
n
401
ILE
401
A
ARG
402
n
402
ARG
402
A
TRP
403
n
403
TRP
403
A
THR
404
n
404
THR
404
A
LYS
405
n
405
LYS
405
A
ASP
406
n
406
ASP
406
A
PRO
407
n
407
PRO
407
A
ARG
408
n
408
ARG
408
A
ASN
409
n
409
ASN
409
A
THR
410
n
410
THR
410
A
GLN
411
n
411
GLN
411
A
ASP
412
n
412
ASP
412
A
HIS
413
n
413
HIS
413
A
VAL
414
n
414
VAL
414
A
ARG
415
n
415
ARG
415
A
SER
416
n
416
SER
416
A
LEU
417
n
417
LEU
417
A
CYS
418
n
418
CYS
418
A
LEU
419
n
419
LEU
419
A
LEU
420
n
420
LEU
420
A
ALA
421
n
421
ALA
421
A
TRP
422
n
422
TRP
422
A
HIS
423
n
423
HIS
423
A
ASN
424
n
424
ASN
424
A
GLY
425
n
425
GLY
425
A
GLU
426
n
426
GLU
426
A
GLU
427
n
427
GLU
427
A
GLU
428
n
428
GLU
428
A
TYR
429
n
429
TYR
429
A
ASN
430
n
430
ASN
430
A
LYS
431
n
431
LYS
431
A
PHE
432
n
432
PHE
432
A
LEU
433
n
433
LEU
433
A
ALA
434
n
434
ALA
434
A
LYS
435
n
435
LYS
435
A
ILE
436
n
436
ILE
436
A
ARG
437
n
437
ARG
437
A
SER
438
n
438
SER
438
A
VAL
439
n
439
VAL
439
A
PRO
440
n
440
PRO
440
A
ILE
441
n
441
ILE
441
A
GLY
442
n
442
GLY
442
A
ARG
443
n
443
ARG
443
A
ALA
444
n
444
ALA
444
A
LEU
445
n
445
LEU
445
A
ASP
446
n
446
ASP
446
A
LEU
447
n
447
LEU
447
A
PRO
448
n
448
PRO
448
A
GLU
449
n
449
GLU
449
A
TYR
450
n
450
TYR
450
A
SER
451
n
451
SER
451
A
THR
452
n
452
THR
452
A
LEU
453
n
453
LEU
453
A
TYR
454
n
454
TYR
454
A
ASP
455
n
455
ASP
455
A
ARG
456
n
456
ARG
456
A
TRP
457
n
457
TRP
457
A
LEU
458
n
458
LEU
458
A
ASP
459
n
459
ASP
459
A
SER
460
n
460
SER
460
A
PHE
461
n
461
PHE
461
A
author_defined_assembly
1
monomeric
A
LEU
268
A
O
LEU
268
1_555
A
NA
3001
B
NA
NA
1_555
A
SER
271
A
OG
SER
271
1_555
98.1
A
LEU
268
A
O
LEU
268
1_555
A
NA
3001
B
NA
NA
1_555
A
GLY
284
A
O
GLY
284
1_555
100.4
A
SER
271
A
OG
SER
271
1_555
A
NA
3001
B
NA
NA
1_555
A
GLY
284
A
O
GLY
284
1_555
136.6
A
LEU
268
A
O
LEU
268
1_555
A
NA
3001
B
NA
NA
1_555
A
GLY
285
A
O
GLY
285
1_555
67.3
A
SER
271
A
OG
SER
271
1_555
A
NA
3001
B
NA
NA
1_555
A
GLY
285
A
O
GLY
285
1_555
158.8
A
GLY
284
A
O
GLY
284
1_555
A
NA
3001
B
NA
NA
1_555
A
GLY
285
A
O
GLY
285
1_555
63.6
A
CAS
96
S-(DIMETHYLARSENIC)CYSTEINE
A
CAS
96
CYS
A
CAS
212
S-(DIMETHYLARSENIC)CYSTEINE
A
CAS
212
CYS
A
CAS
281
S-(DIMETHYLARSENIC)CYSTEINE
A
CAS
281
CYS
A
CAS
290
S-(DIMETHYLARSENIC)CYSTEINE
A
CAS
290
CYS
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
GLU
2
A
N
GLU
2
A
O
LYS
283
A
O
LYS
283
A
O
TYR
280
A
O
TYR
280
A
N
HIS
273
A
N
HIS
273
A
O
HIS
272
A
O
HIS
272
A
N
LEU
154
A
N
LEU
154
A
N
TYR
157
A
N
TYR
157
A
O
ILE
176
A
O
ILE
176
A
N
GLU
26
A
N
GLU
26
A
O
THR
404
A
O
THR
404
A
N
GLU
39
A
N
GLU
39
A
O
ARG
163
A
O
ARG
163
A
N
PHE
230
A
N
PHE
230
A
O
ALA
332
A
O
ALA
332
A
O
ASP
329
A
O
ASP
329
A
N
TYR
326
A
N
TYR
326
A
N
ASP
233
A
N
ASP
233
A
O
THR
355
A
O
THR
355
A
N
ARG
379
A
N
ARG
379
A
O
HIS
389
A
O
HIS
389
1
A
ASP
47
-46.53
109.17
1
A
PRO
48
-49.61
-15.08
1
A
VAL
63
-59.32
-6.11
1
A
THR
68
-109.79
-63.10
1
A
ASP
71
-68.95
-173.73
1
A
LEU
97
-30.61
-39.13
1
A
SER
115
-39.60
147.50
1
A
LEU
131
-78.49
-94.66
1
A
ASN
132
74.13
104.47
1
A
LYS
133
-51.42
-72.34
1
A
GLN
134
-15.18
-58.72
1
A
ILE
150
-129.97
-168.28
1
A
PRO
153
-42.40
154.97
1
A
CAS
212
-46.15
157.96
1
A
TYR
237
-44.11
-71.40
1
A
ASN
269
-61.66
-71.37
1
A
LYS
276
66.14
-117.27
1
A
LYS
359
38.16
31.32
1
A
LEU
374
71.55
39.03
1
A
LYS
375
72.49
-14.66
1
A
PRO
385
-49.10
-18.48
42.9
4.28
7.95
0.0
4.28
0.0
-8.57
THE STRUCTURE WAS REFINED WITH ANOMALOUS DATA TO ACCOUNT FOR SIGNIFICANT ANOMALOUS SIGNAL FROM ARSENIC, WHICH IS FOUND IN SEVERAL CAS RESIDUES IN THE STRUCTURE. HOWEVER, THE DATA REDUCTION AND COMPLETENESS STATISTICS ARE BASED ON MERGING ANOMALOUS REFLECTIONS. RESIDUES 132-135 HAVE POOR SIDECHAIN DENSITY AND THE MODEL REFLECTS THE BACKBONE PATH IN THIS REGION OF THE STRUCTURE
0.25
0.23
2.6
29.8
5967
60710
60710
94.7
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
PDB ENTRY 1RA6
Engh & Huber
0.41
0.37
5.0
0.78
0.72
2.6
29.8
129
3896
60
0
3707
0.007
1.3
22.1
0.80
15.3
2.6
30
2ILY
31801
31801
0.115
1
11.9
5.31
97.6
2.6
2.69
3.7
3238
0.458
1
5.02
96.3
data collection
CrystalClear
(MSC/RIGAKU)
refinement
CNS
data reduction
d*TREK
data scaling
d*TREK
phasing
CNS
Crystal structure of poliovirus polymerase complexed with ATP and Mg2+
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
4
N
N
4
N
N
4
N
N
4
N
N
4
N
N
5
N
N
A
LYS
10
A
LYS
10
HELX_P
A
GLY
13
A
GLY
13
5
1
4
A
ASP
53
A
ASP
53
HELX_P
A
SER
60
A
SER
60
1
2
8
A
ASP
71
A
ASP
71
HELX_P
A
SER
87
A
SER
87
1
3
17
A
CAS
96
A
CAS
96
HELX_P
A
GLY
103
A
GLY
103
1
4
8
A
PRO
119
A
PRO
119
HELX_P
A
GLY
124
A
GLY
124
1
5
6
A
LYS
126
A
LYS
126
HELX_P
A
LEU
131
A
LEU
131
1
6
6
A
THR
138
A
THR
138
HELX_P
A
GLY
149
A
GLY
149
1
7
12
A
LYS
165
A
LYS
165
HELX_P
A
GLN
170
A
GLN
170
1
8
6
A
SER
180
A
SER
180
HELX_P
A
LYS
200
A
LYS
200
1
9
21
A
ASP
213
A
ASP
213
HELX_P
A
MET
225
A
MET
225
1
10
13
A
GLY
236
A
GLY
236
HELX_P
A
LEU
241
A
LEU
241
1
11
6
A
SER
242
A
SER
242
HELX_P
A
ILE
256
A
ILE
256
1
12
15
A
GLY
257
A
GLY
257
HELX_P
A
ARG
261
A
ARG
261
5
13
5
A
VAL
262
A
VAL
262
HELX_P
A
ASN
269
A
ASN
269
1
14
8
A
GLY
292
A
GLY
292
HELX_P
A
TYR
313
A
TYR
313
1
15
22
A
ASP
317
A
ASP
317
HELX_P
A
LEU
321
A
LEU
321
5
16
5
A
ASP
339
A
ASP
339
HELX_P
A
TYR
350
A
TYR
350
1
17
12
A
PRO
393
A
PRO
393
HELX_P
A
ARG
402
A
ARG
402
1
18
10
A
ASP
406
A
ASP
406
HELX_P
A
ARG
408
A
ARG
408
5
19
3
A
ASN
409
A
ASN
409
HELX_P
A
TRP
422
A
TRP
422
1
20
14
A
GLY
425
A
GLY
425
HELX_P
A
ARG
437
A
ARG
437
1
21
13
A
VAL
439
A
VAL
439
HELX_P
A
ALA
444
A
ALA
444
1
22
6
A
GLU
449
A
GLU
449
HELX_P
A
PHE
461
A
PHE
461
1
23
13
covale
1.332
both
A
MET
95
A
C
MET
95
1_555
A
CAS
96
A
N
CAS
96
1_555
covale
1.330
both
A
CAS
96
A
C
CAS
96
1_555
A
LEU
97
A
N
LEU
97
1_555
covale
1.321
both
A
GLY
211
A
C
GLY
211
1_555
A
CAS
212
A
N
CAS
212
1_555
covale
1.334
both
A
CAS
212
A
C
CAS
212
1_555
A
ASP
213
A
N
ASP
213
1_555
covale
1.326
both
A
TYR
280
A
C
TYR
280
1_555
A
CAS
281
A
N
CAS
281
1_555
covale
1.332
both
A
CAS
281
A
C
CAS
281
1_555
A
VAL
282
A
N
VAL
282
1_555
covale
1.332
both
A
GLY
289
A
C
GLY
289
1_555
A
CAS
290
A
N
CAS
290
1_555
covale
1.325
both
A
CAS
290
A
C
CAS
290
1_555
A
SER
291
A
N
SER
291
1_555
metalc
2.747
A
LEU
268
A
O
LEU
268
1_555
A
NA
3001
B
NA
NA
1_555
metalc
2.684
A
SER
271
A
OG
SER
271
1_555
A
NA
3001
B
NA
NA
1_555
metalc
2.789
A
GLY
284
A
O
GLY
284
1_555
A
NA
3001
B
NA
NA
1_555
metalc
2.679
A
GLY
285
A
O
GLY
285
1_555
A
NA
3001
B
NA
NA
1_555
TRANSFERASE
nucleotidyltransferase, poliovirus, 3d, rna-dependent, polymerase, stabilization, TRANSFERASE
A
TYR
118
A
TYR
118
1
A
PRO
119
A
PRO
119
0.07
POLG_POL1M
UNP
1
1748
P03300
GEIQWMRPSKEVGYPIINAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDFEEAIFSKYVGNKITEVDEYMKEAVDH
YAGQLMSLDINTEQMCLEDAMYGTDGLEALDLSTSAGYPYVAMGKKKRDILNKQTRDTKEMQKLLDTYGINLPLVTYVKD
ELRSKTKVEQGKSRLIEASSLNDSVAMRMAFGNLYAAFHKNPGVITGSAVGCDPDLFWSKIPVLMEEKLFAFDYTGYDAS
LSPAWFEALKMVLEKIGFGDRVDYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSMINNLIIRTLLLKTYKGIDLDH
LKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADKSATFETVTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHES
IRWTKDPRNTQDHVRSLCLLAWHNGEEEYNKFLAKIRSVPIGRALLLPEYSTLYRRWLDSF
1748
2208
2ILY
1
461
P03300
A
1
1
461
1
CYS
modified residue
CAS
96
2ILY
A
P03300
UNP
1843
96
1
CYS
modified residue
CAS
212
2ILY
A
P03300
UNP
1959
212
1
CYS
modified residue
CAS
281
2ILY
A
P03300
UNP
2028
281
1
CYS
modified residue
CAS
290
2ILY
A
P03300
UNP
2037
290
1
LEU
engineered mutation
ASP
446
2ILY
A
P03300
UNP
2193
446
1
ARG
engineered mutation
ASP
455
2ILY
A
P03300
UNP
2202
455
5
2
2
3
2
2
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
GLU
2
A
GLU
2
A
PRO
8
A
PRO
8
A
LYS
278
A
LYS
278
A
LYS
283
A
LYS
283
A
HIS
270
A
HIS
270
A
TYR
275
A
TYR
275
A
LEU
154
A
LEU
154
A
VAL
158
A
VAL
158
A
LEU
175
A
LEU
175
A
ALA
178
A
ALA
178
A
GLU
26
A
GLU
26
A
PRO
27
A
PRO
27
A
TRP
403
A
TRP
403
A
THR
404
A
THR
404
A
GLU
39
A
GLU
39
A
PRO
40
A
PRO
40
A
LEU
162
A
LEU
162
A
ARG
163
A
ARG
163
A
LYS
228
A
LYS
228
A
PHE
230
A
PHE
230
A
ASP
329
A
ASP
329
A
TYR
334
A
TYR
334
A
LYS
322
A
LYS
322
A
TYR
326
A
TYR
326
A
PHE
232
A
PHE
232
A
TYR
234
A
TYR
234
A
MET
354
A
MET
354
A
PRO
356
A
PRO
356
A
PHE
377
A
PHE
377
A
ALA
380
A
ALA
380
A
ILE
388
A
ILE
388
A
VAL
391
A
VAL
391
BINDING SITE FOR RESIDUE NA A 3001
A
NA
3001
Software
5
BINDING SITE FOR RESIDUE ATP A 1001
A
ATP
1001
Software
15
BINDING SITE FOR RESIDUE ACY A 901
A
ACY
901
Software
7
BINDING SITE FOR RESIDUE ACY A 902
A
ACY
902
Software
4
BINDING SITE FOR RESIDUE ACY A 903
A
ACY
903
Software
2
BINDING SITE FOR RESIDUE ACY A 904
A
ACY
904
Software
4
BINDING SITE FOR RESIDUE ACY A 905
A
ACY
905
Software
1
BINDING SITE FOR RESIDUE ACY A 906
A
ACY
906
Software
1
BINDING SITE FOR RESIDUE ACY A 907
A
ACY
907
Software
1
A
LEU
268
A
LEU
268
5
1_555
A
ASN
269
A
ASN
269
5
1_555
A
SER
271
A
SER
271
5
1_555
A
GLY
284
A
GLY
284
5
1_555
A
GLY
285
A
GLY
285
5
1_555
A
LYS
159
A
LYS
159
15
1_555
A
ARG
163
A
ARG
163
15
1_555
A
LYS
167
A
LYS
167
15
1_555
A
ARG
174
A
ARG
174
15
1_555
A
LEU
175
A
LEU
175
15
1_555
A
ILE
176
A
ILE
176
15
1_555
A
THR
235
A
THR
235
15
1_555
A
GLY
236
A
GLY
236
15
1_555
A
TYR
237
A
TYR
237
15
1_555
A
ASP
238
A
ASP
238
15
1_555
A
SER
288
A
SER
288
15
1_555
A
ASP
328
A
ASP
328
15
1_555
A
LYS
359
A
LYS
359
15
1_555
A
HOH
600
K
HOH
15
1_555
A
HOH
601
K
HOH
15
1_555
A
SER
28
A
SER
28
7
1_555
A
ILE
401
A
ILE
401
7
1_555
A
TRP
403
A
TRP
403
7
1_555
A
THR
404
A
THR
404
7
1_555
A
THR
410
A
THR
410
7
1_555
A
HIS
413
A
HIS
413
7
1_555
A
HOH
589
K
HOH
7
1_555
A
ASP
71
A
ASP
71
4
1_555
A
LYS
311
A
LYS
311
4
1_555
A
ASP
349
A
ASP
349
4
1_555
A
TYR
350
A
TYR
350
4
1_555
A
LYS
375
A
LYS
375
2
1_555
A
MET
392
A
MET
392
2
1_555
A
TYR
334
A
TYR
334
4
5_775
A
HIS
336
A
HIS
336
4
5_775
A
PRO
440
A
PRO
440
4
1_555
A
ARG
443
A
ARG
443
4
1_555
A
ARG
379
A
ARG
379
1
1_555
A
HIS
270
A
HIS
270
1
1_555
A
HOH
607
K
HOH
1
1_555
170
P 65