0.019689
0.000000
0.000000
0.000000
0.017279
0.000000
0.000000
0.000000
0.016145
0.00000
0.00000
0.00000
Tie, Y.
Boross, P.I.
Wang, Y.F.
Gaddis, L.
Manna, D.
Hussain, A.K.
Leshchenko, S.
Ghosh, A.K.
Louis, J.M.
Harrison, R.W.
Weber, I.T.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
50.790
57.874
61.939
C27 H37 N3 O7 S
547.664
(3R,3AS,6AR)-HEXAHYDROFURO[2,3-B]FURAN-3-YL(1S,2R)-3-[[(4-AMINOPHENYL)SULFONYL](ISOBUTYL)AMINO]-1-BENZYL-2-HYDROXYPROPYLCARBAMATE
Darunavir; TMC114; UIC-94017
non-polymer
C2 H4 O2
60.052
ACETIC ACID
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cl -1
35.453
CHLORIDE ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C2 H6 O S
78.133
DIMETHYL SULFOXIDE
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
O4 P -3
94.971
PHOSPHATE ION
non-polymer
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
Y
2
N
C
Y
3
N
C
Y
4
N
C
Y
5
N
C
Y
6
N
C
Y
7
N
C
N
8
N
S
N
9
N
O
N
10
N
O
N
11
N
N
N
12
N
C
N
13
N
C
N
14
N
C
N
15
N
C
N
16
N
C
N
17
R
C
N
18
N
O
N
19
S
C
N
20
N
N
N
21
N
C
N
22
N
O
N
23
N
O
N
24
R
C
N
25
N
C
N
26
N
O
N
27
R
C
N
28
N
O
N
29
N
C
N
30
N
C
N
31
S
C
N
32
N
C
Y
33
N
C
Y
34
N
C
Y
35
N
C
Y
36
N
C
Y
37
N
C
Y
38
N
C
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
C
N
77
N
O
N
78
N
O
N
79
N
C
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
N
N
85
S
C
N
86
N
C
N
87
N
O
N
88
N
C
N
89
N
O
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
N
N
98
S
C
N
99
N
C
N
100
N
O
N
101
N
C
N
102
N
C
N
103
N
C
N
104
N
N
N
105
N
C
N
106
N
N
N
107
N
N
N
108
N
O
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
N
N
125
S
C
N
126
N
C
N
127
N
O
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
N
N
132
N
O
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
N
N
142
S
C
N
143
N
C
N
144
N
O
N
145
N
C
N
146
N
C
N
147
N
O
N
148
N
O
N
149
N
O
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
CL
N
158
N
N
N
159
R
C
N
160
N
C
N
161
N
O
N
162
N
C
N
163
N
S
N
164
N
O
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
S
N
173
N
O
N
174
N
C
N
175
N
C
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
N
N
183
S
C
N
184
N
C
N
185
N
O
N
186
N
C
N
187
N
C
N
188
N
C
N
189
N
O
N
190
N
N
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
N
N
203
S
C
N
204
N
C
N
205
N
O
N
206
N
C
N
207
N
C
N
208
N
C
N
209
N
O
N
210
N
O
N
211
N
O
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
N
N
222
N
C
N
223
N
C
N
224
N
O
N
225
N
O
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
C
N
232
N
O
N
233
N
C
N
234
N
O
N
235
N
C
N
236
N
O
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
N
N
246
S
C
N
247
N
C
N
248
N
O
N
249
N
C
Y
250
N
C
Y
251
N
N
Y
252
N
C
Y
253
N
C
Y
254
N
N
N
255
N
O
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
O
N
267
N
H
N
268
N
H
N
269
N
N
N
270
S
C
N
271
N
C
N
272
N
O
N
273
S
C
N
274
N
C
N
275
N
C
N
276
N
C
N
277
N
O
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
N
N
292
S
C
N
293
N
C
N
294
N
O
N
295
N
C
N
296
N
C
N
297
N
C
N
298
N
C
N
299
N
O
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
N
N
314
S
C
N
315
N
C
N
316
N
O
N
317
N
C
N
318
N
C
N
319
N
C
N
320
N
C
N
321
N
N
N
322
N
O
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
N
N
339
S
C
N
340
N
C
N
341
N
O
N
342
N
C
N
343
N
C
N
344
N
S
N
345
N
C
N
346
N
O
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
N
N
359
S
C
N
360
N
C
N
361
N
O
N
362
N
C
Y
363
N
C
Y
364
N
C
Y
365
N
C
Y
366
N
C
Y
367
N
C
Y
368
N
C
N
369
N
O
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
P
N
382
N
O
N
383
N
O
N
384
N
O
N
385
N
O
N
386
N
N
N
387
S
C
N
388
N
C
N
389
N
O
N
390
N
C
N
391
N
C
N
392
N
C
N
393
N
O
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
N
N
404
S
C
N
405
N
C
N
406
N
O
N
407
N
C
N
408
N
O
N
409
N
O
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
N
N
418
S
C
N
419
N
C
N
420
N
O
N
421
R
C
N
422
N
O
N
423
N
C
N
424
N
O
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
N
N
435
S
C
N
436
N
C
N
437
N
O
N
438
N
C
Y
439
N
C
Y
440
N
C
Y
441
N
C
Y
442
N
N
Y
443
N
C
Y
444
N
C
Y
445
N
C
Y
446
N
C
Y
447
N
C
N
448
N
O
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
N
N
462
S
C
N
463
N
C
N
464
N
O
N
465
N
C
Y
466
N
C
Y
467
N
C
Y
468
N
C
Y
469
N
C
Y
470
N
C
Y
471
N
C
N
472
N
O
N
473
N
O
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
N
N
486
S
C
N
487
N
C
N
488
N
O
N
489
N
C
N
490
N
C
N
491
N
C
N
492
N
O
N
493
N
H
N
494
N
H
N
495
N
H
N
496
N
H
N
497
N
H
N
498
N
H
N
499
N
H
N
500
N
H
N
501
N
H
N
502
N
H
N
503
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
Y
4
N
doub
Y
5
N
sing
Y
6
N
sing
N
7
N
sing
Y
8
N
doub
N
9
N
sing
Y
10
N
sing
N
11
N
sing
Y
12
N
doub
N
13
N
sing
N
14
N
sing
N
15
N
doub
N
16
N
doub
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
doub
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
Y
68
N
doub
Y
69
N
sing
N
70
N
sing
Y
71
N
sing
N
72
N
sing
Y
73
N
doub
N
74
N
sing
Y
75
N
sing
N
76
N
sing
Y
77
N
doub
N
78
N
sing
N
79
N
doub
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
doub
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
doub
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
doub
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
doub
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
doub
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
doub
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
doub
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
doub
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
doub
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
doub
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
doub
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
doub
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
doub
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
doub
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
Y
247
N
sing
Y
248
N
doub
Y
249
N
doub
N
250
N
sing
Y
251
N
sing
N
252
N
sing
Y
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
doub
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
doub
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
doub
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
doub
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
doub
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
Y
355
N
doub
Y
356
N
sing
Y
357
N
sing
N
358
N
sing
Y
359
N
doub
N
360
N
sing
Y
361
N
doub
N
362
N
sing
Y
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
doub
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
doub
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
doub
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
doub
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
doub
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
Y
428
N
doub
Y
429
N
sing
Y
430
N
sing
N
431
N
sing
Y
432
N
doub
Y
433
N
sing
Y
434
N
sing
N
435
N
sing
Y
436
N
sing
Y
437
N
doub
N
438
N
sing
Y
439
N
doub
N
440
N
sing
Y
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
doub
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
Y
456
N
doub
Y
457
N
sing
Y
458
N
sing
N
459
N
sing
Y
460
N
doub
N
461
N
sing
Y
462
N
doub
N
463
N
sing
Y
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
doub
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
sing
N
486
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
338
341
352
10.1016/j.jmb.2004.02.052
15066436
High Resolution Crystal Structures of HIV-1 Protease with a Potent Non-Peptide Inhibitor (Uic-94017) Active Against Multi-Drug-Resistant Clinical Strains.
2004
10.2210/pdb2idw/pdb
pdb_00002idw
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
90.0
1
CCD
2002-12-10
MARRESEARCH
SINGLE WAVELENGTH
M
x-ray
1
1.0000
1.0
22-ID
APS
1.0000
SYNCHROTRON
APS BEAMLINE 22-ID
10712.623
Protease
3.4.23.16
residues 500-598
Q7K, L33I, L63I, C67A, V82A, C95A, Q107K, L133I, L163I, C167A, V182A, C195A
2
man
polymer
35.453
CHLORIDE ION
1
syn
non-polymer
94.971
PHOSPHATE ION
4
syn
non-polymer
78.133
DIMETHYL SULFOXIDE
1
syn
non-polymer
60.052
ACETIC ACID
6
syn
non-polymer
92.094
GLYCEROL
1
syn
non-polymer
547.664
(3R,3AS,6AR)-HEXAHYDROFURO[2,3-B]FURAN-3-YL(1S,2R)-3-[[(4-AMINOPHENYL)SULFONYL](ISOBUTYL)AMINO]-1-BENZYL-2-HYDROXYPROPYLCARBAMATE
1
syn
non-polymer
18.015
water
257
nat
water
RETROPEPSIN
no
no
PQITLWKRPLVTIKIGGQLKEALLDTGADDTVIEEMSLPGRWKPKMIGGIGGFIKVRQYDQIIIEIAGHKAIGTVLVGPT
PANIIGRNLLTQIGATLNF
PQITLWKRPLVTIKIGGQLKEALLDTGADDTVIEEMSLPGRWKPKMIGGIGGFIKVRQYDQIIIEIAGHKAIGTVLVGPT
PANIIGRNLLTQIGATLNF
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Lentivirus
Escherichia
Escherichia coli
sample
gag, pol
11676
Human immunodeficiency virus 1
469008
Escherichia coli BL21(DE3)
BL21(DE3)
PLASMID
PET11A
1
2.07
40.08
VAPOR DIFFUSION, HANGING DROP
5.00
AMMONIUM SULFATE, CITRIC PHOSPHATE, DMSO, pH 5.00, VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
software
chem_comp
database_2
struct_ref_seq_dif
struct_site
chem_comp_atom
chem_comp_bond
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Non-polymer description
Version format compliance
Refinement description
Database references
Derived calculations
Structure summary
Data collection
Refinement description
1
0
2006-10-03
1
1
2008-05-01
1
2
2011-07-13
1
3
2017-10-18
1
4
2021-10-20
1
5
2023-08-30
_software.classification
_software.name
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
2006-10-03
SPRSDE
RCSB
Y
RCSB
2006-09-15
REL
REL
CL
CHLORIDE ION
PO4
PHOSPHATE ION
DMS
DIMETHYL SULFOXIDE
ACY
ACETIC ACID
GOL
GLYCEROL
017
(3R,3AS,6AR)-HEXAHYDROFURO[2,3-B]FURAN-3-YL(1S,2R)-3-[[(4-AMINOPHENYL)SULFONYL](ISOBUTYL)AMINO]-1-BENZYL-2-HYDROXYPROPYLCARBAMATE
HOH
water
1DAZ
PDB ENTRY 1DAZ
PDB
experimental model
NCL
501
2
CL
CL
501
A
PO4
701
3
PO4
PO4
701
A
PO4
702
3
PO4
PO4
702
A
PO4
704
3
PO4
PO4
704
A
DMS
901
4
DMS
DMS
901
A
ACY
601
5
ACY
ACY
601
A
ACY
605
5
ACY
ACY
605
A
GOL
801
6
GOL
GOL
801
A
PO4
703
3
PO4
PO4
703
B
017
401
7
017
017
401
B
ACY
602
5
ACY
ACY
602
B
ACY
603
5
ACY
ACY
603
B
ACY
604
5
ACY
ACY
604
B
ACY
606
5
ACY
ACY
606
B
HOH
1003
8
HOH
HOH
1003
A
HOH
1004
8
HOH
HOH
1004
A
HOH
1011
8
HOH
HOH
1011
A
HOH
1012
8
HOH
HOH
1012
A
HOH
1013
8
HOH
HOH
1013
A
HOH
1014
8
HOH
HOH
1014
A
HOH
1016
8
HOH
HOH
1016
A
HOH
1018
8
HOH
HOH
1018
A
HOH
1020
8
HOH
HOH
1020
A
HOH
1022
8
HOH
HOH
1022
A
HOH
1023
8
HOH
HOH
1023
A
HOH
1024
8
HOH
HOH
1024
A
HOH
1027
8
HOH
HOH
1027
A
HOH
1029
8
HOH
HOH
1029
A
HOH
1031
8
HOH
HOH
1031
A
HOH
1032
8
HOH
HOH
1032
A
HOH
1033
8
HOH
HOH
1033
A
HOH
1034
8
HOH
HOH
1034
A
HOH
1038
8
HOH
HOH
1038
A
HOH
1039
8
HOH
HOH
1039
A
HOH
1040
8
HOH
HOH
1040
A
HOH
1041
8
HOH
HOH
1041
A
HOH
1043
8
HOH
HOH
1043
A
HOH
1044
8
HOH
HOH
1044
A
HOH
1054
8
HOH
HOH
1054
A
HOH
1057
8
HOH
HOH
1057
A
HOH
1058
8
HOH
HOH
1058
A
HOH
1062
8
HOH
HOH
1062
A
HOH
1063
8
HOH
HOH
1063
A
HOH
1065
8
HOH
HOH
1065
A
HOH
1066
8
HOH
HOH
1066
A
HOH
1068
8
HOH
HOH
1068
A
HOH
1072
8
HOH
HOH
1072
A
HOH
1074
8
HOH
HOH
1074
A
HOH
1075
8
HOH
HOH
1075
A
HOH
1076
8
HOH
HOH
1076
A
HOH
1077
8
HOH
HOH
1077
A
HOH
1079
8
HOH
HOH
1079
A
HOH
1081
8
HOH
HOH
1081
A
HOH
1088
8
HOH
HOH
1088
A
HOH
1090
8
HOH
HOH
1090
A
HOH
1091
8
HOH
HOH
1091
A
HOH
1092
8
HOH
HOH
1092
A
HOH
1093
8
HOH
HOH
1093
A
HOH
1094
8
HOH
HOH
1094
A
HOH
1095
8
HOH
HOH
1095
A
HOH
1097
8
HOH
HOH
1097
A
HOH
1100
8
HOH
HOH
1100
A
HOH
1104
8
HOH
HOH
1104
A
HOH
1105
8
HOH
HOH
1105
A
HOH
1106
8
HOH
HOH
1106
A
HOH
1110
8
HOH
HOH
1110
A
HOH
1111
8
HOH
HOH
1111
A
HOH
1112
8
HOH
HOH
1112
A
HOH
1113
8
HOH
HOH
1113
A
HOH
1115
8
HOH
HOH
1115
A
HOH
1116
8
HOH
HOH
1116
A
HOH
1117
8
HOH
HOH
1117
A
HOH
1119
8
HOH
HOH
1119
A
HOH
1120
8
HOH
HOH
1120
A
HOH
1122
8
HOH
HOH
1122
A
HOH
1124
8
HOH
HOH
1124
A
HOH
1125
8
HOH
HOH
1125
A
HOH
1126
8
HOH
HOH
1126
A
HOH
1130
8
HOH
HOH
1130
A
HOH
1131
8
HOH
HOH
1131
A
HOH
1132
8
HOH
HOH
1132
A
HOH
1134
8
HOH
HOH
1134
A
HOH
1136
8
HOH
HOH
1136
A
HOH
1137
8
HOH
HOH
1137
A
HOH
1141
8
HOH
HOH
1141
A
HOH
1143
8
HOH
HOH
1143
A
HOH
1150
8
HOH
HOH
1150
A
HOH
1158
8
HOH
HOH
1158
A
HOH
1160
8
HOH
HOH
1160
A
HOH
1162
8
HOH
HOH
1162
A
HOH
1163
8
HOH
HOH
1163
A
HOH
1164
8
HOH
HOH
1164
A
HOH
1165
8
HOH
HOH
1165
A
HOH
1166
8
HOH
HOH
1166
A
HOH
1171
8
HOH
HOH
1171
A
HOH
1172
8
HOH
HOH
1172
A
HOH
1175
8
HOH
HOH
1175
A
HOH
1178
8
HOH
HOH
1178
A
HOH
1179
8
HOH
HOH
1179
A
HOH
1181
8
HOH
HOH
1181
A
HOH
1182
8
HOH
HOH
1182
A
HOH
1184
8
HOH
HOH
1184
A
HOH
1186
8
HOH
HOH
1186
A
HOH
1187
8
HOH
HOH
1187
A
HOH
1195
8
HOH
HOH
1195
A
HOH
1196
8
HOH
HOH
1196
A
HOH
1197
8
HOH
HOH
1197
A
HOH
1201
8
HOH
HOH
1201
A
HOH
1202
8
HOH
HOH
1202
A
HOH
1206
8
HOH
HOH
1206
A
HOH
1207
8
HOH
HOH
1207
A
HOH
1208
8
HOH
HOH
1208
A
HOH
1211
8
HOH
HOH
1211
A
HOH
1213
8
HOH
HOH
1213
A
HOH
1216
8
HOH
HOH
1216
A
HOH
1219
8
HOH
HOH
1219
A
HOH
1220
8
HOH
HOH
1220
A
HOH
1221
8
HOH
HOH
1221
A
HOH
1222
8
HOH
HOH
1222
A
HOH
1223
8
HOH
HOH
1223
A
HOH
1224
8
HOH
HOH
1224
A
HOH
1226
8
HOH
HOH
1226
A
HOH
1227
8
HOH
HOH
1227
A
HOH
1229
8
HOH
HOH
1229
A
HOH
1231
8
HOH
HOH
1231
A
HOH
1232
8
HOH
HOH
1232
A
HOH
1233
8
HOH
HOH
1233
A
HOH
1234
8
HOH
HOH
1234
A
HOH
1235
8
HOH
HOH
1235
A
HOH
1237
8
HOH
HOH
1237
A
HOH
1238
8
HOH
HOH
1238
A
HOH
1241
8
HOH
HOH
1241
A
HOH
1242
8
HOH
HOH
1242
A
HOH
1244
8
HOH
HOH
1244
A
HOH
1245
8
HOH
HOH
1245
A
HOH
1247
8
HOH
HOH
1247
A
HOH
1248
8
HOH
HOH
1248
A
HOH
1260
8
HOH
HOH
1260
A
HOH
1262
8
HOH
HOH
1262
A
HOH
1263
8
HOH
HOH
1263
A
HOH
1264
8
HOH
HOH
1264
A
HOH
1266
8
HOH
HOH
1266
A
HOH
1267
8
HOH
HOH
1267
A
HOH
1268
8
HOH
HOH
1268
A
HOH
1269
8
HOH
HOH
1269
A
HOH
1270
8
HOH
HOH
1270
A
HOH
1271
8
HOH
HOH
1271
A
HOH
1272
8
HOH
HOH
1272
A
HOH
1273
8
HOH
HOH
1273
A
HOH
1274
8
HOH
HOH
1274
A
HOH
1275
8
HOH
HOH
1275
A
HOH
1001
8
HOH
HOH
1001
B
HOH
1002
8
HOH
HOH
1002
B
HOH
1005
8
HOH
HOH
1005
B
HOH
1006
8
HOH
HOH
1006
B
HOH
1007
8
HOH
HOH
1007
B
HOH
1008
8
HOH
HOH
1008
B
HOH
1009
8
HOH
HOH
1009
B
HOH
1010
8
HOH
HOH
1010
B
HOH
1015
8
HOH
HOH
1015
B
HOH
1017
8
HOH
HOH
1017
B
HOH
1019
8
HOH
HOH
1019
B
HOH
1021
8
HOH
HOH
1021
B
HOH
1025
8
HOH
HOH
1025
B
HOH
1026
8
HOH
HOH
1026
B
HOH
1028
8
HOH
HOH
1028
B
HOH
1030
8
HOH
HOH
1030
B
HOH
1035
8
HOH
HOH
1035
B
HOH
1036
8
HOH
HOH
1036
B
HOH
1037
8
HOH
HOH
1037
B
HOH
1042
8
HOH
HOH
1042
B
HOH
1045
8
HOH
HOH
1045
B
HOH
1046
8
HOH
HOH
1046
B
HOH
1047
8
HOH
HOH
1047
B
HOH
1048
8
HOH
HOH
1048
B
HOH
1049
8
HOH
HOH
1049
B
HOH
1050
8
HOH
HOH
1050
B
HOH
1051
8
HOH
HOH
1051
B
HOH
1052
8
HOH
HOH
1052
B
HOH
1053
8
HOH
HOH
1053
B
HOH
1055
8
HOH
HOH
1055
B
HOH
1056
8
HOH
HOH
1056
B
HOH
1059
8
HOH
HOH
1059
B
HOH
1060
8
HOH
HOH
1060
B
HOH
1061
8
HOH
HOH
1061
B
HOH
1064
8
HOH
HOH
1064
B
HOH
1067
8
HOH
HOH
1067
B
HOH
1069
8
HOH
HOH
1069
B
HOH
1070
8
HOH
HOH
1070
B
HOH
1071
8
HOH
HOH
1071
B
HOH
1073
8
HOH
HOH
1073
B
HOH
1078
8
HOH
HOH
1078
B
HOH
1080
8
HOH
HOH
1080
B
HOH
1082
8
HOH
HOH
1082
B
HOH
1083
8
HOH
HOH
1083
B
HOH
1084
8
HOH
HOH
1084
B
HOH
1085
8
HOH
HOH
1085
B
HOH
1086
8
HOH
HOH
1086
B
HOH
1087
8
HOH
HOH
1087
B
HOH
1089
8
HOH
HOH
1089
B
HOH
1096
8
HOH
HOH
1096
B
HOH
1098
8
HOH
HOH
1098
B
HOH
1099
8
HOH
HOH
1099
B
HOH
1101
8
HOH
HOH
1101
B
HOH
1102
8
HOH
HOH
1102
B
HOH
1103
8
HOH
HOH
1103
B
HOH
1107
8
HOH
HOH
1107
B
HOH
1109
8
HOH
HOH
1109
B
HOH
1114
8
HOH
HOH
1114
B
HOH
1118
8
HOH
HOH
1118
B
HOH
1121
8
HOH
HOH
1121
B
HOH
1123
8
HOH
HOH
1123
B
HOH
1127
8
HOH
HOH
1127
B
HOH
1129
8
HOH
HOH
1129
B
HOH
1133
8
HOH
HOH
1133
B
HOH
1135
8
HOH
HOH
1135
B
HOH
1138
8
HOH
HOH
1138
B
HOH
1140
8
HOH
HOH
1140
B
HOH
1142
8
HOH
HOH
1142
B
HOH
1144
8
HOH
HOH
1144
B
HOH
1145
8
HOH
HOH
1145
B
HOH
1146
8
HOH
HOH
1146
B
HOH
1147
8
HOH
HOH
1147
B
HOH
1148
8
HOH
HOH
1148
B
HOH
1149
8
HOH
HOH
1149
B
HOH
1151
8
HOH
HOH
1151
B
HOH
1152
8
HOH
HOH
1152
B
HOH
1153
8
HOH
HOH
1153
B
HOH
1154
8
HOH
HOH
1154
B
HOH
1156
8
HOH
HOH
1156
B
HOH
1157
8
HOH
HOH
1157
B
HOH
1159
8
HOH
HOH
1159
B
HOH
1161
8
HOH
HOH
1161
B
HOH
1168
8
HOH
HOH
1168
B
HOH
1169
8
HOH
HOH
1169
B
HOH
1170
8
HOH
HOH
1170
B
HOH
1173
8
HOH
HOH
1173
B
HOH
1174
8
HOH
HOH
1174
B
HOH
1176
8
HOH
HOH
1176
B
HOH
1180
8
HOH
HOH
1180
B
HOH
1183
8
HOH
HOH
1183
B
HOH
1185
8
HOH
HOH
1185
B
HOH
1189
8
HOH
HOH
1189
B
HOH
1190
8
HOH
HOH
1190
B
HOH
1191
8
HOH
HOH
1191
B
HOH
1192
8
HOH
HOH
1192
B
HOH
1193
8
HOH
HOH
1193
B
HOH
1194
8
HOH
HOH
1194
B
HOH
1198
8
HOH
HOH
1198
B
HOH
1199
8
HOH
HOH
1199
B
HOH
1200
8
HOH
HOH
1200
B
HOH
1203
8
HOH
HOH
1203
B
HOH
1204
8
HOH
HOH
1204
B
HOH
1205
8
HOH
HOH
1205
B
HOH
1209
8
HOH
HOH
1209
B
HOH
1210
8
HOH
HOH
1210
B
HOH
1212
8
HOH
HOH
1212
B
HOH
1214
8
HOH
HOH
1214
B
HOH
1215
8
HOH
HOH
1215
B
HOH
1217
8
HOH
HOH
1217
B
HOH
1225
8
HOH
HOH
1225
B
HOH
1228
8
HOH
HOH
1228
B
HOH
1230
8
HOH
HOH
1230
B
HOH
1246
8
HOH
HOH
1246
B
HOH
1249
8
HOH
HOH
1249
B
HOH
1250
8
HOH
HOH
1250
B
HOH
1255
8
HOH
HOH
1255
B
HOH
1257
8
HOH
HOH
1257
B
HOH
1258
8
HOH
HOH
1258
B
HOH
1259
8
HOH
HOH
1259
B
HOH
1261
8
HOH
HOH
1261
B
PRO
1
n
1
PRO
1
A
GLN
2
n
2
GLN
2
A
ILE
3
n
3
ILE
3
A
THR
4
n
4
THR
4
A
LEU
5
n
5
LEU
5
A
TRP
6
n
6
TRP
6
A
LYS
7
n
7
LYS
7
A
ARG
8
n
8
ARG
8
A
PRO
9
n
9
PRO
9
A
LEU
10
n
10
LEU
10
A
VAL
11
n
11
VAL
11
A
THR
12
n
12
THR
12
A
ILE
13
n
13
ILE
13
A
LYS
14
n
14
LYS
14
A
ILE
15
n
15
ILE
15
A
GLY
16
n
16
GLY
16
A
GLY
17
n
17
GLY
17
A
GLN
18
n
18
GLN
18
A
LEU
19
n
19
LEU
19
A
LYS
20
n
20
LYS
20
A
GLU
21
n
21
GLU
21
A
ALA
22
n
22
ALA
22
A
LEU
23
n
23
LEU
23
A
LEU
24
n
24
LEU
24
A
ASP
25
n
25
ASP
25
A
THR
26
n
26
THR
26
A
GLY
27
n
27
GLY
27
A
ALA
28
n
28
ALA
28
A
ASP
29
n
29
ASP
29
A
ASP
30
n
30
ASP
30
A
THR
31
n
31
THR
31
A
VAL
32
n
32
VAL
32
A
ILE
33
n
33
ILE
33
A
GLU
34
n
34
GLU
34
A
GLU
35
n
35
GLU
35
A
MET
36
n
36
MET
36
A
SER
37
n
37
SER
37
A
LEU
38
n
38
LEU
38
A
PRO
39
n
39
PRO
39
A
GLY
40
n
40
GLY
40
A
ARG
41
n
41
ARG
41
A
TRP
42
n
42
TRP
42
A
LYS
43
n
43
LYS
43
A
PRO
44
n
44
PRO
44
A
LYS
45
n
45
LYS
45
A
MET
46
n
46
MET
46
A
ILE
47
n
47
ILE
47
A
GLY
48
n
48
GLY
48
A
GLY
49
n
49
GLY
49
A
ILE
50
n
50
ILE
50
A
GLY
51
n
51
GLY
51
A
GLY
52
n
52
GLY
52
A
PHE
53
n
53
PHE
53
A
ILE
54
n
54
ILE
54
A
LYS
55
n
55
LYS
55
A
VAL
56
n
56
VAL
56
A
ARG
57
n
57
ARG
57
A
GLN
58
n
58
GLN
58
A
TYR
59
n
59
TYR
59
A
ASP
60
n
60
ASP
60
A
GLN
61
n
61
GLN
61
A
ILE
62
n
62
ILE
62
A
ILE
63
n
63
ILE
63
A
ILE
64
n
64
ILE
64
A
GLU
65
n
65
GLU
65
A
ILE
66
n
66
ILE
66
A
ALA
67
n
67
ALA
67
A
GLY
68
n
68
GLY
68
A
HIS
69
n
69
HIS
69
A
LYS
70
n
70
LYS
70
A
ALA
71
n
71
ALA
71
A
ILE
72
n
72
ILE
72
A
GLY
73
n
73
GLY
73
A
THR
74
n
74
THR
74
A
VAL
75
n
75
VAL
75
A
LEU
76
n
76
LEU
76
A
VAL
77
n
77
VAL
77
A
GLY
78
n
78
GLY
78
A
PRO
79
n
79
PRO
79
A
THR
80
n
80
THR
80
A
PRO
81
n
81
PRO
81
A
ALA
82
n
82
ALA
82
A
ASN
83
n
83
ASN
83
A
ILE
84
n
84
ILE
84
A
ILE
85
n
85
ILE
85
A
GLY
86
n
86
GLY
86
A
ARG
87
n
87
ARG
87
A
ASN
88
n
88
ASN
88
A
LEU
89
n
89
LEU
89
A
LEU
90
n
90
LEU
90
A
THR
91
n
91
THR
91
A
GLN
92
n
92
GLN
92
A
ILE
93
n
93
ILE
93
A
GLY
94
n
94
GLY
94
A
ALA
95
n
95
ALA
95
A
THR
96
n
96
THR
96
A
LEU
97
n
97
LEU
97
A
ASN
98
n
98
ASN
98
A
PHE
99
n
99
PHE
99
A
PRO
101
n
1
PRO
101
B
GLN
102
n
2
GLN
102
B
ILE
103
n
3
ILE
103
B
THR
104
n
4
THR
104
B
LEU
105
n
5
LEU
105
B
TRP
106
n
6
TRP
106
B
LYS
107
n
7
LYS
107
B
ARG
108
n
8
ARG
108
B
PRO
109
n
9
PRO
109
B
LEU
110
n
10
LEU
110
B
VAL
111
n
11
VAL
111
B
THR
112
n
12
THR
112
B
ILE
113
n
13
ILE
113
B
LYS
114
n
14
LYS
114
B
ILE
115
n
15
ILE
115
B
GLY
116
n
16
GLY
116
B
GLY
117
n
17
GLY
117
B
GLN
118
n
18
GLN
118
B
LEU
119
n
19
LEU
119
B
LYS
120
n
20
LYS
120
B
GLU
121
n
21
GLU
121
B
ALA
122
n
22
ALA
122
B
LEU
123
n
23
LEU
123
B
LEU
124
n
24
LEU
124
B
ASP
125
n
25
ASP
125
B
THR
126
n
26
THR
126
B
GLY
127
n
27
GLY
127
B
ALA
128
n
28
ALA
128
B
ASP
129
n
29
ASP
129
B
ASP
130
n
30
ASP
130
B
THR
131
n
31
THR
131
B
VAL
132
n
32
VAL
132
B
ILE
133
n
33
ILE
133
B
GLU
134
n
34
GLU
134
B
GLU
135
n
35
GLU
135
B
MET
136
n
36
MET
136
B
SER
137
n
37
SER
137
B
LEU
138
n
38
LEU
138
B
PRO
139
n
39
PRO
139
B
GLY
140
n
40
GLY
140
B
ARG
141
n
41
ARG
141
B
TRP
142
n
42
TRP
142
B
LYS
143
n
43
LYS
143
B
PRO
144
n
44
PRO
144
B
LYS
145
n
45
LYS
145
B
MET
146
n
46
MET
146
B
ILE
147
n
47
ILE
147
B
GLY
148
n
48
GLY
148
B
GLY
149
n
49
GLY
149
B
ILE
150
n
50
ILE
150
B
GLY
151
n
51
GLY
151
B
GLY
152
n
52
GLY
152
B
PHE
153
n
53
PHE
153
B
ILE
154
n
54
ILE
154
B
LYS
155
n
55
LYS
155
B
VAL
156
n
56
VAL
156
B
ARG
157
n
57
ARG
157
B
GLN
158
n
58
GLN
158
B
TYR
159
n
59
TYR
159
B
ASP
160
n
60
ASP
160
B
GLN
161
n
61
GLN
161
B
ILE
162
n
62
ILE
162
B
ILE
163
n
63
ILE
163
B
ILE
164
n
64
ILE
164
B
GLU
165
n
65
GLU
165
B
ILE
166
n
66
ILE
166
B
ALA
167
n
67
ALA
167
B
GLY
168
n
68
GLY
168
B
HIS
169
n
69
HIS
169
B
LYS
170
n
70
LYS
170
B
ALA
171
n
71
ALA
171
B
ILE
172
n
72
ILE
172
B
GLY
173
n
73
GLY
173
B
THR
174
n
74
THR
174
B
VAL
175
n
75
VAL
175
B
LEU
176
n
76
LEU
176
B
VAL
177
n
77
VAL
177
B
GLY
178
n
78
GLY
178
B
PRO
179
n
79
PRO
179
B
THR
180
n
80
THR
180
B
PRO
181
n
81
PRO
181
B
ALA
182
n
82
ALA
182
B
ASN
183
n
83
ASN
183
B
ILE
184
n
84
ILE
184
B
ILE
185
n
85
ILE
185
B
GLY
186
n
86
GLY
186
B
ARG
187
n
87
ARG
187
B
ASN
188
n
88
ASN
188
B
LEU
189
n
89
LEU
189
B
LEU
190
n
90
LEU
190
B
THR
191
n
91
THR
191
B
GLN
192
n
92
GLN
192
B
ILE
193
n
93
ILE
193
B
GLY
194
n
94
GLY
194
B
ALA
195
n
95
ALA
195
B
THR
196
n
96
THR
196
B
LEU
197
n
97
LEU
197
B
ASN
198
n
98
ASN
198
B
PHE
199
n
99
PHE
199
B
0.104
0.117
0.102
0.116
0.144
0.145
3351
3715
5.000
5.000
66823
author_and_software_defined_assembly
PISA
2
dimeric
5970
-60
9660
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ILE
3
A
N
ILE
3
B
O
LEU
197
B
O
LEU
97
B
O
THR
196
B
O
THR
96
A
N
ASN
98
A
N
ASN
98
A
N
LEU
97
A
N
LEU
97
B
O
ILE
103
B
O
ILE
3
A
N
LYS
45
A
N
LYS
45
A
O
VAL
56
A
O
VAL
56
A
N
ILE
66
A
N
ILE
66
A
O
HIS
69
A
O
HIS
69
A
O
LEU
76
A
O
LEU
76
A
N
ILE
33
A
N
ILE
33
A
N
VAL
32
A
N
VAL
32
A
O
ILE
84
A
O
ILE
84
A
O
ILE
85
A
O
ILE
85
A
N
LEU
23
A
N
LEU
23
A
O
LYS
20
A
O
LYS
20
A
N
ILE
13
A
N
ILE
13
A
N
LYS
14
A
N
LYS
14
A
O
GLU
65
A
O
GLU
65
B
N
LYS
143
B
N
LYS
43
B
O
GLN
158
B
O
GLN
58
B
N
ILE
166
B
N
ILE
66
B
O
HIS
169
B
O
HIS
69
B
O
LEU
176
B
O
LEU
76
B
N
ILE
133
B
N
ILE
33
B
N
VAL
132
B
N
VAL
32
B
O
ILE
184
B
O
ILE
84
B
O
ILE
185
B
O
ILE
85
B
N
LEU
123
B
N
LEU
23
B
O
LYS
120
B
O
LYS
20
B
N
ILE
113
B
N
ILE
13
B
N
LYS
114
B
N
LYS
14
B
O
GLU
165
B
O
GLU
65
1
A
A
CL
O
CL
HOH
501
1163
1.64
A
1
9.96
1.60
122.70
132.66
A
A
A
O
C
N
ILE
ILE
THR
3
3
4
B
Y
1
13.35
1.40
123.60
136.95
A
A
A
CD
NE
CZ
ARG
ARG
ARG
8
8
8
A
A
A
N
1
6.09
0.50
120.30
126.39
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
8
8
8
A
A
A
N
1
5.84
0.90
118.30
124.14
A
A
A
CB
CG
OD2
ASP
ASP
ASP
30
30
30
A
A
A
N
1
-3.39
0.50
120.30
116.91
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
41
41
41
A
A
A
N
1
-4.75
0.50
120.30
115.55
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
57
57
57
N
1
-6.00
0.90
118.30
112.30
A
A
A
CB
CG
OD1
ASP
ASP
ASP
60
60
60
N
1
5.49
0.90
118.30
123.79
A
A
A
CB
CG
OD2
ASP
ASP
ASP
60
60
60
N
1
9.11
1.40
123.60
132.71
B
B
B
CD
NE
CZ
ARG
ARG
ARG
108
108
108
B
B
B
N
1
4.97
0.50
120.30
125.27
B
B
B
NE
CZ
NH1
ARG
ARG
ARG
108
108
108
B
B
B
N
1
-3.08
0.50
120.30
117.22
B
B
B
NE
CZ
NH2
ARG
ARG
ARG
108
108
108
A
A
A
N
1
13.46
2.00
116.20
129.66
B
B
B
CA
C
N
PRO
PRO
GLY
139
139
140
B
B
B
Y
1
-16.05
1.70
123.20
107.15
B
B
B
O
C
N
PRO
PRO
GLY
139
139
140
B
B
B
Y
1
10.49
1.40
123.60
134.09
B
B
B
CD
NE
CZ
ARG
ARG
ARG
141
141
141
B
B
B
N
1
13.42
2.20
113.40
126.82
B
B
B
CA
CB
CG
LYS
LYS
LYS
143
143
143
N
1
3.50
0.50
120.30
123.80
B
B
B
NE
CZ
NH1
ARG
ARG
ARG
187
187
187
N
1
-3.62
0.50
120.30
116.68
B
B
B
NE
CZ
NH2
ARG
ARG
ARG
187
187
187
N
0.145
0.116
0.117
1.10
10.00
25871
3715
74373
24400
5.000
99.7
RANDOM
1
0.000
MOLECULAR REPLACEMENT
PDB ENTRY 1DAZ
Engh & Huber
43
1624.00
1768.00
1.10
10.00
257
1858
93
0
1508
0.014
0.034
0.000
0.030
0.085
0.086
0.144
0.005
0.051
0.073
1.100
50.000
2IDW
74707
3.000
0.052
1
18.4000
5.400
99.7
0.196
1.10
1.14
1
2.40
97.6
phasing
AMoRE
refinement
SHELXL-97
data collection
MAR345
data scaling
HKL-2000
Crystal structure analysis of HIV-1 protease mutant V82A with a potent non-peptide inhibitor (UIC-94017)
1
N
N
1
N
N
2
N
N
3
N
N
3
N
N
3
N
N
4
N
N
5
N
N
5
N
N
6
N
N
3
N
N
7
N
N
5
N
N
5
N
N
5
N
N
5
N
N
8
N
N
8
N
N
A
GLY
86
A
GLY
86
HELX_P
A
THR
91
A
THR
91
1
1
6
A
GLN
92
A
GLN
92
HELX_P
A
GLY
94
A
GLY
94
5
2
3
B
GLY
186
B
GLY
86
HELX_P
B
THR
191
B
THR
91
1
3
6
HYDROLASE
HIV-1 PROTEASE, MUTANT, DIMER, INHIBITOR, UIC-94017, HYDROLASE
POL_HV1PV
UNP
1
500
P03368
500
598
2IDW
1
99
P03368
A
1
1
99
500
598
2IDW
101
199
P03368
B
1
1
99
1
GLN
engineered mutation
LYS
7
2IDW
A
P03368
UNP
506
7
1
LEU
engineered mutation
ILE
33
2IDW
A
P03368
UNP
532
33
1
LEU
engineered mutation
ILE
63
2IDW
A
P03368
UNP
562
63
1
CYS
engineered mutation
ALA
67
2IDW
A
P03368
UNP
566
67
1
VAL
engineered mutation
ALA
82
2IDW
A
P03368
UNP
581
82
1
CYS
engineered mutation
ALA
95
2IDW
A
P03368
UNP
594
95
2
GLN
engineered mutation
LYS
107
2IDW
B
P03368
UNP
506
7
2
LEU
engineered mutation
ILE
133
2IDW
B
P03368
UNP
532
33
2
LEU
engineered mutation
ILE
163
2IDW
B
P03368
UNP
562
63
2
CYS
engineered mutation
ALA
167
2IDW
B
P03368
UNP
566
67
2
VAL
engineered mutation
ALA
182
2IDW
B
P03368
UNP
581
82
2
CYS
engineered mutation
ALA
195
2IDW
B
P03368
UNP
594
95
4
8
8
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
parallel
anti-parallel
anti-parallel
A
GLN
2
A
GLN
2
A
ILE
3
A
ILE
3
B
THR
196
B
THR
96
B
ASN
198
B
ASN
98
A
THR
96
A
THR
96
A
ASN
98
A
ASN
98
B
GLN
102
B
GLN
2
B
ILE
103
B
ILE
3
A
LYS
43
A
LYS
43
A
GLY
49
A
GLY
49
A
GLY
52
A
GLY
52
A
ILE
66
A
ILE
66
A
HIS
69
A
HIS
69
A
GLY
78
A
GLY
78
A
THR
31
A
THR
31
A
GLU
34
A
GLU
34
A
ILE
84
A
ILE
84
A
ILE
85
A
ILE
85
A
GLN
18
A
GLN
18
A
LEU
24
A
LEU
24
A
LEU
10
A
LEU
10
A
ILE
15
A
ILE
15
A
GLY
52
A
GLY
52
A
ILE
66
A
ILE
66
B
LYS
143
B
LYS
43
B
GLY
149
B
GLY
49
B
GLY
152
B
GLY
52
B
ILE
166
B
ILE
66
B
HIS
169
B
HIS
69
B
VAL
177
B
VAL
77
B
VAL
132
B
VAL
32
B
ILE
133
B
ILE
33
B
ILE
184
B
ILE
84
B
ILE
185
B
ILE
85
B
GLN
118
B
GLN
18
B
LEU
124
B
LEU
24
B
LEU
110
B
LEU
10
B
ILE
115
B
ILE
15
B
GLY
152
B
GLY
52
B
ILE
166
B
ILE
66
BINDING SITE FOR RESIDUE CL A 501
A
CL
501
Software
5
BINDING SITE FOR RESIDUE PO4 A 701
A
PO4
701
Software
13
BINDING SITE FOR RESIDUE PO4 A 702
A
PO4
702
Software
6
BINDING SITE FOR RESIDUE PO4 B 703
B
PO4
703
Software
6
BINDING SITE FOR RESIDUE PO4 A 704
A
PO4
704
Software
8
BINDING SITE FOR RESIDUE 017 B 401
B
017
401
Software
20
BINDING SITE FOR RESIDUE DMS A 901
A
DMS
901
Software
9
BINDING SITE FOR RESIDUE ACY A 601
A
ACY
601
Software
3
BINDING SITE FOR RESIDUE ACY B 602
B
ACY
602
Software
3
BINDING SITE FOR RESIDUE ACY B 603
B
ACY
603
Software
6
BINDING SITE FOR RESIDUE ACY B 604
B
ACY
604
Software
4
BINDING SITE FOR RESIDUE ACY A 605
A
ACY
605
Software
7
BINDING SITE FOR RESIDUE ACY B 606
B
ACY
606
Software
8
BINDING SITE FOR RESIDUE GOL A 801
A
GOL
801
Software
6
A
GLY
73
A
GLY
73
5
1_555
A
THR
74
A
THR
74
5
1_555
A
ASN
88
A
ASN
88
5
1_555
A
HOH
1163
Q
HOH
5
1_555
A
HOH
1237
Q
HOH
5
1_555
A
LYS
14
A
LYS
14
13
1_555
A
ILE
15
A
ILE
15
13
1_555
A
GLY
16
A
GLY
16
13
1_555
A
GLY
17
A
GLY
17
13
1_555
A
HOH
1013
Q
HOH
13
1_555
A
HOH
1057
Q
HOH
13
1_555
A
HOH
1063
Q
HOH
13
1_555
A
HOH
1247
Q
HOH
13
1_555
A
HOH
1262
Q
HOH
13
1_555
B
LYS
114
B
LYS
14
13
1_455
B
GLY
117
B
GLY
17
13
1_455
B
ACY
606
P
ACY
13
1_455
B
HOH
1154
R
HOH
13
1_455
A
PRO
39
A
PRO
39
6
1_555
A
GLY
40
A
GLY
40
6
1_555
A
HOH
1115
Q
HOH
6
1_555
A
HOH
1270
Q
HOH
6
1_555
B
MET
136
B
MET
36
6
1_455
B
SER
137
B
SER
37
6
1_455
B
PRO
101
B
PRO
1
6
1_555
B
ARG
157
B
ARG
57
6
2_665
B
HIS
169
B
HIS
69
6
1_555
B
HOH
1049
R
HOH
6
1_555
B
HOH
1133
R
HOH
6
1_555
B
HOH
1210
R
HOH
6
1_555
A
LYS
20
A
LYS
20
8
1_555
A
GLU
21
A
GLU
21
8
1_555
A
GLU
34
A
GLU
34
8
1_555
A
ARG
41
A
ARG
41
8
3_545
A
ASN
83
A
ASN
83
8
1_555
A
HOH
1136
Q
HOH
8
1_555
A
HOH
1164
Q
HOH
8
1_555
A
HOH
1266
Q
HOH
8
1_555
A
ASP
25
A
ASP
25
20
1_555
A
GLY
27
A
GLY
27
20
1_555
A
ALA
28
A
ALA
28
20
1_555
A
ASP
30
A
ASP
30
20
1_555
A
VAL
32
A
VAL
32
20
1_555
A
ILE
47
A
ILE
47
20
1_555
A
GLY
48
A
GLY
48
20
1_555
A
GLY
49
A
GLY
49
20
1_555
A
PRO
81
A
PRO
81
20
1_555
A
ILE
84
A
ILE
84
20
1_555
B
ASP
125
B
ASP
25
20
1_555
B
GLY
127
B
GLY
27
20
1_555
B
ALA
128
B
ALA
28
20
1_555
B
ASP
129
B
ASP
29
20
1_555
B
ASP
130
B
ASP
30
20
1_555
B
GLY
148
B
GLY
48
20
1_555
B
GLY
149
B
GLY
49
20
1_555
B
ILE
150
B
ILE
50
20
1_555
B
HOH
1001
R
HOH
20
1_555
B
HOH
1138
R
HOH
20
1_555
A
PRO
1
A
PRO
1
9
1_555
A
LYS
55
A
LYS
55
9
2_565
A
ACY
605
I
ACY
9
2_565
A
HOH
1248
Q
HOH
9
1_555
B
GLY
168
B
GLY
68
9
4_456
B
HIS
169
B
HIS
69
9
4_456
B
LYS
170
B
LYS
70
9
4_456
B
HOH
1121
R
HOH
9
4_456
B
HOH
1225
R
HOH
9
4_456
A
MET
36
A
MET
36
3
1_555
A
SER
37
A
SER
37
3
1_555
B
PRO
139
B
PRO
39
3
1_455
A
GLN
92
A
GLN
92
3
2_564
B
GLY
149
B
GLY
49
3
1_555
B
HOH
1214
R
HOH
3
1_555
A
TRP
6
A
TRP
6
6
1_555
B
THR
191
B
THR
91
6
1_555
B
GLY
194
B
GLY
94
6
1_555
B
HOH
1025
R
HOH
6
1_555
B
HOH
1205
R
HOH
6
1_555
B
HOH
1230
R
HOH
6
1_555
B
LEU
110
B
LEU
10
4
1_555
B
VAL
111
B
VAL
11
4
1_555
B
THR
112
B
THR
12
4
1_555
B
GLU
121
B
GLU
21
4
1_555
A
MET
46
A
MET
46
7
1_555
A
PHE
53
A
PHE
53
7
1_555
A
LYS
55
A
LYS
55
7
1_555
A
DMS
901
G
DMS
7
2_564
A
HOH
1012
Q
HOH
7
1_555
B
HOH
1121
R
HOH
7
3_655
B
HOH
1225
R
HOH
7
3_655
A
LYS
14
A
LYS
14
8
1_655
A
LYS
70
A
LYS
70
8
1_655
A
PO4
701
D
PO4
8
1_655
A
HOH
1247
Q
HOH
8
1_655
B
LYS
114
B
LYS
14
8
1_555
B
LYS
155
B
LYS
55
8
2_665
B
GLU
165
B
GLU
65
8
1_555
B
HOH
1154
R
HOH
8
1_555
A
TRP
42
A
TRP
42
6
1_555
A
PRO
44
A
PRO
44
6
1_555
A
VAL
56
A
VAL
56
6
1_555
A
HOH
1032
Q
HOH
6
1_555
A
HOH
1058
Q
HOH
6
1_555
B
HOH
1052
R
HOH
6
2_564
19
P 21 21 21