0.016949
0.000000
0.000000
0.000000
0.016949
0.000000
0.000000
0.000000
0.003731
0.00000
0.00000
0.00000
Bornholdt, Z.A.
Prasad, B.V.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
16
90.000
90.000
90.000
59.000
59.000
268.022
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C N S -1
58.082
THIOCYANATE ION
non-polymer
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Nat.Struct.Mol.Biol.
1545-9993
13
559
560
10.1038/nsmb1099
16715094
X-ray structure of influenza virus NS1 effector domain.
2006
200
1
CCD
2005-12-13
ADSC QUANTUM 315
SAGITALLY FOCUSED Si(111)
SINGLE WAVELENGTH
M
x-ray
1
0.97909
1.0
19-ID
APS
0.97909
SYNCHROTRON
APS BEAMLINE 19-ID
14736.932
NS1 Effector Domain
NS1 Effector Domain
2
man
polymer
58.082
THIOCYANATE ION
3
syn
non-polymer
18.015
water
270
nat
water
Nonstructural protein NS1
no
yes
(MSE)T(MSE)ASVPASRYLTD(MSE)TLEE(MSE)SRDWS(MSE)LIPKQKVAGPLCIR(MSE)DQAI(MSE)DKNIIL
KANFSVIFDRLETLILLRAFTEEGAIVGEISPLPSLPGHTAEDVKNAVGVLIGGLEWNDNTVRVSETLQRFAWRSSN
MTMASVPASRYLTDMTLEEMSRDWSMLIPKQKVAGPLCIRMDQAIMDKNIILKANFSVIFDRLETLILLRAFTEEGAIVG
EISPLPSLPGHTAEDVKNAVGVLIGGLEWNDNTVRVSETLQRFAWRSSN
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
A/Puerto Rico/8/34
Escherichia
sample
Segment 8 - NS1
11309
unidentified influenza virus
562
Escherichia coli
1
3.96
68.90
VAPOR DIFFUSION, HANGING DROP
6.8
200 mM NaSCN, 100 mM Hepes pH 6.8, 16% PEG 3350, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K
298.0
software
struct
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Advisory
Version format compliance
Refinement description
Database references
Derived calculations
Structure summary
1
0
2006-05-30
1
1
2008-05-01
1
2
2011-07-13
1
3
2017-10-18
1
4
2020-09-09
_software.classification
_software.contact_author
_software.contact_author_email
_software.date
_software.language
_software.location
_software.name
_software.type
_software.version
_struct.title
_struct_conn.pdbx_leaving_atom_flag
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
N
RCSB
Y
RCSB
2006-05-08
REL
REL
SCN
THIOCYANATE ION
HOH
water
SCN
9901
2
SCN
SCN
9901
A
SCN
9903
2
SCN
SCN
9903
A
SCN
9902
2
SCN
SCN
9902
B
HOH
209
3
HOH
HOH
211
A
HOH
211
3
HOH
HOH
212
A
HOH
212
3
HOH
HOH
213
A
HOH
213
3
HOH
HOH
214
A
HOH
214
3
HOH
HOH
215
A
HOH
216
3
HOH
HOH
216
A
HOH
217
3
HOH
HOH
217
A
HOH
1199
3
HOH
HOH
218
A
HOH
2191
3
HOH
HOH
219
A
HOH
3295
3
HOH
HOH
220
A
HOH
4199
3
HOH
HOH
221
A
HOH
4594
3
HOH
HOH
222
A
HOH
4695
3
HOH
HOH
223
A
HOH
5091
3
HOH
HOH
224
A
HOH
1222
3
HOH
HOH
9904
A
HOH
1252
3
HOH
HOH
9905
A
HOH
1223
3
HOH
HOH
9906
A
HOH
1263
3
HOH
HOH
9907
A
HOH
5214
3
HOH
HOH
9908
A
HOH
1236
3
HOH
HOH
9909
A
HOH
5218
3
HOH
HOH
9910
A
HOH
1110
3
HOH
HOH
9911
A
HOH
1210
3
HOH
HOH
9912
A
HOH
1410
3
HOH
HOH
9913
A
HOH
1111
3
HOH
HOH
9914
A
HOH
1311
3
HOH
HOH
9915
A
HOH
1411
3
HOH
HOH
9916
A
HOH
1112
3
HOH
HOH
9917
A
HOH
1312
3
HOH
HOH
9918
A
HOH
1412
3
HOH
HOH
9919
A
HOH
1512
3
HOH
HOH
9920
A
HOH
1413
3
HOH
HOH
9921
A
HOH
1216
3
HOH
HOH
9922
A
HOH
1316
3
HOH
HOH
9923
A
HOH
1317
3
HOH
HOH
9924
A
HOH
1118
3
HOH
HOH
9925
A
HOH
1218
3
HOH
HOH
9926
A
HOH
22
3
HOH
HOH
9927
A
HOH
23
3
HOH
HOH
9928
A
HOH
24
3
HOH
HOH
9929
A
HOH
25
3
HOH
HOH
9930
A
HOH
26
3
HOH
HOH
9931
A
HOH
30
3
HOH
HOH
9932
A
HOH
36
3
HOH
HOH
9933
A
HOH
41
3
HOH
HOH
9934
A
HOH
43
3
HOH
HOH
9935
A
HOH
44
3
HOH
HOH
9936
A
HOH
45
3
HOH
HOH
9937
A
HOH
52
3
HOH
HOH
9938
A
HOH
53
3
HOH
HOH
9939
A
HOH
56
3
HOH
HOH
9940
A
HOH
58
3
HOH
HOH
9941
A
HOH
59
3
HOH
HOH
9942
A
HOH
61
3
HOH
HOH
9943
A
HOH
63
3
HOH
HOH
9944
A
HOH
64
3
HOH
HOH
9945
A
HOH
65
3
HOH
HOH
9946
A
HOH
68
3
HOH
HOH
9947
A
HOH
70
3
HOH
HOH
9948
A
HOH
72
3
HOH
HOH
9949
A
HOH
73
3
HOH
HOH
9950
A
HOH
75
3
HOH
HOH
9951
A
HOH
83
3
HOH
HOH
9952
A
HOH
86
3
HOH
HOH
9953
A
HOH
88
3
HOH
HOH
9954
A
HOH
89
3
HOH
HOH
9955
A
HOH
90
3
HOH
HOH
9956
A
HOH
91
3
HOH
HOH
9957
A
HOH
92
3
HOH
HOH
9958
A
HOH
93
3
HOH
HOH
9959
A
HOH
94
3
HOH
HOH
9960
A
HOH
95
3
HOH
HOH
9961
A
HOH
96
3
HOH
HOH
9962
A
HOH
99
3
HOH
HOH
9963
A
HOH
101
3
HOH
HOH
9964
A
HOH
103
3
HOH
HOH
9965
A
HOH
106
3
HOH
HOH
9966
A
HOH
111
3
HOH
HOH
9967
A
HOH
112
3
HOH
HOH
9968
A
HOH
114
3
HOH
HOH
9969
A
HOH
115
3
HOH
HOH
9970
A
HOH
116
3
HOH
HOH
9971
A
HOH
121
3
HOH
HOH
9972
A
HOH
125
3
HOH
HOH
9973
A
HOH
126
3
HOH
HOH
9974
A
HOH
128
3
HOH
HOH
9975
A
HOH
130
3
HOH
HOH
9976
A
HOH
133
3
HOH
HOH
9977
A
HOH
135
3
HOH
HOH
9978
A
HOH
138
3
HOH
HOH
9979
A
HOH
144
3
HOH
HOH
9980
A
HOH
146
3
HOH
HOH
9981
A
HOH
148
3
HOH
HOH
9982
A
HOH
149
3
HOH
HOH
9983
A
HOH
155
3
HOH
HOH
9984
A
HOH
159
3
HOH
HOH
9985
A
HOH
173
3
HOH
HOH
9986
A
HOH
175
3
HOH
HOH
9987
A
HOH
176
3
HOH
HOH
9988
A
HOH
177
3
HOH
HOH
9989
A
HOH
183
3
HOH
HOH
9990
A
HOH
188
3
HOH
HOH
9991
A
HOH
189
3
HOH
HOH
9992
A
HOH
193
3
HOH
HOH
9993
A
HOH
195
3
HOH
HOH
9994
A
HOH
200
3
HOH
HOH
9995
A
HOH
201
3
HOH
HOH
9996
A
HOH
206
3
HOH
HOH
9997
A
HOH
207
3
HOH
HOH
9998
A
HOH
208
3
HOH
HOH
9999
A
HOH
140
3
HOH
HOH
211
B
HOH
141
3
HOH
HOH
212
B
HOH
142
3
HOH
HOH
213
B
HOH
145
3
HOH
HOH
214
B
HOH
147
3
HOH
HOH
215
B
HOH
151
3
HOH
HOH
216
B
HOH
152
3
HOH
HOH
217
B
HOH
153
3
HOH
HOH
218
B
HOH
154
3
HOH
HOH
219
B
HOH
156
3
HOH
HOH
220
B
HOH
157
3
HOH
HOH
221
B
HOH
158
3
HOH
HOH
222
B
HOH
160
3
HOH
HOH
223
B
HOH
161
3
HOH
HOH
224
B
HOH
163
3
HOH
HOH
225
B
HOH
164
3
HOH
HOH
226
B
HOH
165
3
HOH
HOH
227
B
HOH
166
3
HOH
HOH
228
B
HOH
167
3
HOH
HOH
229
B
HOH
168
3
HOH
HOH
230
B
HOH
169
3
HOH
HOH
231
B
HOH
170
3
HOH
HOH
232
B
HOH
171
3
HOH
HOH
233
B
HOH
172
3
HOH
HOH
234
B
HOH
174
3
HOH
HOH
235
B
HOH
178
3
HOH
HOH
236
B
HOH
179
3
HOH
HOH
237
B
HOH
180
3
HOH
HOH
238
B
HOH
181
3
HOH
HOH
239
B
HOH
182
3
HOH
HOH
240
B
HOH
184
3
HOH
HOH
241
B
HOH
185
3
HOH
HOH
242
B
HOH
186
3
HOH
HOH
243
B
HOH
187
3
HOH
HOH
244
B
HOH
190
3
HOH
HOH
245
B
HOH
191
3
HOH
HOH
246
B
HOH
192
3
HOH
HOH
247
B
HOH
194
3
HOH
HOH
248
B
HOH
196
3
HOH
HOH
249
B
HOH
197
3
HOH
HOH
250
B
HOH
198
3
HOH
HOH
251
B
HOH
199
3
HOH
HOH
252
B
HOH
202
3
HOH
HOH
253
B
HOH
203
3
HOH
HOH
254
B
HOH
205
3
HOH
HOH
255
B
HOH
210
3
HOH
HOH
256
B
HOH
219
3
HOH
HOH
257
B
HOH
222
3
HOH
HOH
258
B
HOH
1299
3
HOH
HOH
259
B
HOH
1399
3
HOH
HOH
260
B
HOH
1499
3
HOH
HOH
261
B
HOH
1599
3
HOH
HOH
262
B
HOH
2391
3
HOH
HOH
263
B
HOH
3195
3
HOH
HOH
264
B
HOH
3395
3
HOH
HOH
265
B
HOH
3495
3
HOH
HOH
266
B
HOH
3595
3
HOH
HOH
267
B
HOH
4392
3
HOH
HOH
268
B
HOH
4493
3
HOH
HOH
269
B
HOH
4796
3
HOH
HOH
270
B
HOH
6091
3
HOH
HOH
271
B
HOH
7092
3
HOH
HOH
272
B
HOH
4291
3
HOH
HOH
273
B
HOH
5212
3
HOH
HOH
9903
B
HOH
1232
3
HOH
HOH
9904
B
HOH
5213
3
HOH
HOH
9905
B
HOH
1233
3
HOH
HOH
9906
B
HOH
1243
3
HOH
HOH
9907
B
HOH
1253
3
HOH
HOH
9908
B
HOH
1224
3
HOH
HOH
9909
B
HOH
1234
3
HOH
HOH
9910
B
HOH
1244
3
HOH
HOH
9911
B
HOH
1254
3
HOH
HOH
9912
B
HOH
5216
3
HOH
HOH
9913
B
HOH
1226
3
HOH
HOH
9914
B
HOH
1246
3
HOH
HOH
9915
B
HOH
1256
3
HOH
HOH
9916
B
HOH
1266
3
HOH
HOH
9917
B
HOH
5217
3
HOH
HOH
9918
B
HOH
1227
3
HOH
HOH
9919
B
HOH
1237
3
HOH
HOH
9920
B
HOH
1247
3
HOH
HOH
9921
B
HOH
1257
3
HOH
HOH
9922
B
HOH
1267
3
HOH
HOH
9923
B
HOH
1228
3
HOH
HOH
9924
B
HOH
1238
3
HOH
HOH
9925
B
HOH
1248
3
HOH
HOH
9926
B
HOH
1258
3
HOH
HOH
9927
B
HOH
1310
3
HOH
HOH
9928
B
HOH
1510
3
HOH
HOH
9929
B
HOH
1610
3
HOH
HOH
9930
B
HOH
1211
3
HOH
HOH
9931
B
HOH
1511
3
HOH
HOH
9932
B
HOH
1212
3
HOH
HOH
9933
B
HOH
1612
3
HOH
HOH
9934
B
HOH
1113
3
HOH
HOH
9935
B
HOH
1213
3
HOH
HOH
9936
B
HOH
1313
3
HOH
HOH
9937
B
HOH
1513
3
HOH
HOH
9938
B
HOH
1114
3
HOH
HOH
9939
B
HOH
1214
3
HOH
HOH
9940
B
HOH
1115
3
HOH
HOH
9941
B
HOH
1215
3
HOH
HOH
9942
B
HOH
1315
3
HOH
HOH
9943
B
HOH
1116
3
HOH
HOH
9944
B
HOH
1117
3
HOH
HOH
9945
B
HOH
1217
3
HOH
HOH
9946
B
HOH
1120
3
HOH
HOH
9947
B
HOH
1220
3
HOH
HOH
9948
B
HOH
28
3
HOH
HOH
9949
B
HOH
31
3
HOH
HOH
9950
B
HOH
32
3
HOH
HOH
9951
B
HOH
35
3
HOH
HOH
9952
B
HOH
38
3
HOH
HOH
9953
B
HOH
39
3
HOH
HOH
9954
B
HOH
42
3
HOH
HOH
9955
B
HOH
47
3
HOH
HOH
9956
B
HOH
48
3
HOH
HOH
9957
B
HOH
49
3
HOH
HOH
9958
B
HOH
50
3
HOH
HOH
9959
B
HOH
51
3
HOH
HOH
9960
B
HOH
54
3
HOH
HOH
9961
B
HOH
55
3
HOH
HOH
9962
B
HOH
57
3
HOH
HOH
9963
B
HOH
60
3
HOH
HOH
9964
B
HOH
62
3
HOH
HOH
9965
B
HOH
66
3
HOH
HOH
9966
B
HOH
67
3
HOH
HOH
9967
B
HOH
69
3
HOH
HOH
9968
B
HOH
71
3
HOH
HOH
9969
B
HOH
74
3
HOH
HOH
9970
B
HOH
76
3
HOH
HOH
9971
B
HOH
78
3
HOH
HOH
9972
B
HOH
79
3
HOH
HOH
9973
B
HOH
80
3
HOH
HOH
9974
B
HOH
81
3
HOH
HOH
9975
B
HOH
82
3
HOH
HOH
9976
B
HOH
85
3
HOH
HOH
9977
B
HOH
87
3
HOH
HOH
9978
B
HOH
97
3
HOH
HOH
9979
B
HOH
98
3
HOH
HOH
9980
B
HOH
100
3
HOH
HOH
9981
B
HOH
102
3
HOH
HOH
9982
B
HOH
105
3
HOH
HOH
9983
B
HOH
110
3
HOH
HOH
9984
B
HOH
113
3
HOH
HOH
9985
B
HOH
117
3
HOH
HOH
9986
B
HOH
118
3
HOH
HOH
9987
B
HOH
119
3
HOH
HOH
9988
B
HOH
120
3
HOH
HOH
9989
B
HOH
122
3
HOH
HOH
9990
B
HOH
123
3
HOH
HOH
9991
B
HOH
124
3
HOH
HOH
9992
B
HOH
129
3
HOH
HOH
9993
B
HOH
131
3
HOH
HOH
9994
B
HOH
132
3
HOH
HOH
9995
B
HOH
134
3
HOH
HOH
9996
B
HOH
136
3
HOH
HOH
9997
B
HOH
137
3
HOH
HOH
9998
B
HOH
139
3
HOH
HOH
9999
B
33.897
21.535
12.743
S
20.00
1.000
50.016
18.506
10.346
S
20.00
0.994
18.436
17.218
15.004
S
20.00
0.911
6.851
15.778
4.784
S
20.00
0.893
2.093
16.338
11.334
S
20.00
0.856
45.262
13.521
6.259
S
20.00
0.852
29.496
19.605
14.058
S
20.00
0.792
-1.470
4.076
11.931
S
20.00
0.536
4.869
25.074
-0.103
S
20.00
0.400
22.869
19.477
13.896
S
20.00
0.371
11.374
12.696
28.464
S
20.00
0.346
9.135
23.312
23.769
S
20.00
0.312
39.622
11.198
-4.364
S
20.00
0.164
16.608
18.921
12.410
S
20.00
0.153
15.386
16.664
13.170
S
20.00
0.144
43.699
15.406
3.420
S
20.00
0.144
7.693
16.062
10.659
S
20.00
0.125
18.934
34.879
10.743
S
20.00
0.116
-3.644
17.285
29.048
S
20.00
0.104
17.505
14.097
11.915
S
20.00
0.091
49.459
17.082
14.182
S
20.00
0.079
32.604
21.159
16.215
S
20.00
0.036
Solvent flattening and Histogram matching
33028
78.600
0.719
502
66.400
0.854
512
66.100
0.843
617
63.100
0.885
679
61.600
0.887
728
60.800
0.893
802
63.000
0.869
863
62.300
0.880
910
60.300
0.879
950
64.300
0.860
1032
61.900
0.861
1069
64.200
0.835
1104
62.500
0.828
1121
64.900
0.801
1186
63.400
0.816
1222
66.300
0.794
1253
63.400
0.782
1272
68.400
0.768
1338
64.200
0.777
1345
67.400
0.759
1381
70.800
0.747
1434
68.400
0.727
1422
72.700
0.721
1512
72.200
0.699
1497
73.800
0.706
1543
77.200
0.698
1544
76.800
0.686
1618
79.100
0.630
2572
MSE
79
n
1
MSE
79
A
THR
80
n
2
THR
80
A
MSE
81
n
3
MSE
81
A
ALA
82
n
4
ALA
82
A
SER
83
n
5
SER
83
A
VAL
84
n
6
VAL
84
A
PRO
85
n
7
PRO
85
A
ALA
86
n
8
ALA
86
A
SER
87
n
9
SER
87
A
ARG
88
n
10
ARG
88
A
TYR
89
n
11
TYR
89
A
LEU
90
n
12
LEU
90
A
THR
91
n
13
THR
91
A
ASP
92
n
14
ASP
92
A
MSE
93
n
15
MSE
93
A
THR
94
n
16
THR
94
A
LEU
95
n
17
LEU
95
A
GLU
96
n
18
GLU
96
A
GLU
97
n
19
GLU
97
A
MSE
98
n
20
MSE
98
A
SER
99
n
21
SER
99
A
ARG
100
n
22
ARG
100
A
ASP
101
n
23
ASP
101
A
TRP
102
n
24
TRP
102
A
SER
103
n
25
SER
103
A
MSE
104
n
26
MSE
104
A
LEU
105
n
27
LEU
105
A
ILE
106
n
28
ILE
106
A
PRO
107
n
29
PRO
107
A
LYS
108
n
30
LYS
108
A
GLN
109
n
31
GLN
109
A
LYS
110
n
32
LYS
110
A
VAL
111
n
33
VAL
111
A
ALA
112
n
34
ALA
112
A
GLY
113
n
35
GLY
113
A
PRO
114
n
36
PRO
114
A
LEU
115
n
37
LEU
115
A
CYS
116
n
38
CYS
116
A
ILE
117
n
39
ILE
117
A
ARG
118
n
40
ARG
118
A
MSE
119
n
41
MSE
119
A
ASP
120
n
42
ASP
120
A
GLN
121
n
43
GLN
121
A
ALA
122
n
44
ALA
122
A
ILE
123
n
45
ILE
123
A
MSE
124
n
46
MSE
124
A
ASP
125
n
47
ASP
125
A
LYS
126
n
48
LYS
126
A
ASN
127
n
49
ASN
127
A
ILE
128
n
50
ILE
128
A
ILE
129
n
51
ILE
129
A
LEU
130
n
52
LEU
130
A
LYS
131
n
53
LYS
131
A
ALA
132
n
54
ALA
132
A
ASN
133
n
55
ASN
133
A
PHE
134
n
56
PHE
134
A
SER
135
n
57
SER
135
A
VAL
136
n
58
VAL
136
A
ILE
137
n
59
ILE
137
A
PHE
138
n
60
PHE
138
A
ASP
139
n
61
ASP
139
A
ARG
140
n
62
ARG
140
A
LEU
141
n
63
LEU
141
A
GLU
142
n
64
GLU
142
A
THR
143
n
65
THR
143
A
LEU
144
n
66
LEU
144
A
ILE
145
n
67
ILE
145
A
LEU
146
n
68
LEU
146
A
LEU
147
n
69
LEU
147
A
ARG
148
n
70
ARG
148
A
ALA
149
n
71
ALA
149
A
PHE
150
n
72
PHE
150
A
THR
151
n
73
THR
151
A
GLU
152
n
74
GLU
152
A
GLU
153
n
75
GLU
153
A
GLY
154
n
76
GLY
154
A
ALA
155
n
77
ALA
155
A
ILE
156
n
78
ILE
156
A
VAL
157
n
79
VAL
157
A
GLY
158
n
80
GLY
158
A
GLU
159
n
81
GLU
159
A
ILE
160
n
82
ILE
160
A
SER
161
n
83
SER
161
A
PRO
162
n
84
PRO
162
A
LEU
163
n
85
LEU
163
A
PRO
164
n
86
PRO
164
A
SER
165
n
87
SER
165
A
LEU
166
n
88
LEU
166
A
PRO
167
n
89
PRO
167
A
GLY
168
n
90
GLY
168
A
HIS
169
n
91
HIS
169
A
THR
170
n
92
THR
170
A
ALA
171
n
93
ALA
171
A
GLU
172
n
94
GLU
172
A
ASP
173
n
95
ASP
173
A
VAL
174
n
96
VAL
174
A
LYS
175
n
97
LYS
175
A
ASN
176
n
98
ASN
176
A
ALA
177
n
99
ALA
177
A
VAL
178
n
100
VAL
178
A
GLY
179
n
101
GLY
179
A
VAL
180
n
102
VAL
180
A
LEU
181
n
103
LEU
181
A
ILE
182
n
104
ILE
182
A
GLY
183
n
105
GLY
183
A
GLY
184
n
106
GLY
184
A
LEU
185
n
107
LEU
185
A
GLU
186
n
108
GLU
186
A
TRP
187
n
109
TRP
187
A
ASN
188
n
110
ASN
188
A
ASP
189
n
111
ASP
189
A
ASN
190
n
112
ASN
190
A
THR
191
n
113
THR
191
A
VAL
192
n
114
VAL
192
A
ARG
193
n
115
ARG
193
A
VAL
194
n
116
VAL
194
A
SER
195
n
117
SER
195
A
GLU
196
n
118
GLU
196
A
THR
197
n
119
THR
197
A
LEU
198
n
120
LEU
198
A
GLN
199
n
121
GLN
199
A
ARG
200
n
122
ARG
200
A
PHE
201
n
123
PHE
201
A
ALA
202
n
124
ALA
202
A
TRP
203
n
125
TRP
203
A
ARG
204
n
126
ARG
204
A
SER
205
n
127
SER
205
A
n
128
206
A
n
129
207
A
n
1
79
B
n
2
80
B
n
3
81
B
n
4
82
B
n
5
83
B
n
6
84
B
n
7
85
B
ALA
86
n
8
ALA
86
B
SER
87
n
9
SER
87
B
ARG
88
n
10
ARG
88
B
TYR
89
n
11
TYR
89
B
LEU
90
n
12
LEU
90
B
THR
91
n
13
THR
91
B
ASP
92
n
14
ASP
92
B
MSE
93
n
15
MSE
93
B
THR
94
n
16
THR
94
B
LEU
95
n
17
LEU
95
B
GLU
96
n
18
GLU
96
B
GLU
97
n
19
GLU
97
B
MSE
98
n
20
MSE
98
B
SER
99
n
21
SER
99
B
ARG
100
n
22
ARG
100
B
ASP
101
n
23
ASP
101
B
TRP
102
n
24
TRP
102
B
SER
103
n
25
SER
103
B
MSE
104
n
26
MSE
104
B
LEU
105
n
27
LEU
105
B
ILE
106
n
28
ILE
106
B
PRO
107
n
29
PRO
107
B
LYS
108
n
30
LYS
108
B
GLN
109
n
31
GLN
109
B
LYS
110
n
32
LYS
110
B
VAL
111
n
33
VAL
111
B
ALA
112
n
34
ALA
112
B
GLY
113
n
35
GLY
113
B
PRO
114
n
36
PRO
114
B
LEU
115
n
37
LEU
115
B
CYS
116
n
38
CYS
116
B
ILE
117
n
39
ILE
117
B
ARG
118
n
40
ARG
118
B
MSE
119
n
41
MSE
119
B
ASP
120
n
42
ASP
120
B
GLN
121
n
43
GLN
121
B
ALA
122
n
44
ALA
122
B
ILE
123
n
45
ILE
123
B
MSE
124
n
46
MSE
124
B
ASP
125
n
47
ASP
125
B
LYS
126
n
48
LYS
126
B
ASN
127
n
49
ASN
127
B
ILE
128
n
50
ILE
128
B
ILE
129
n
51
ILE
129
B
LEU
130
n
52
LEU
130
B
LYS
131
n
53
LYS
131
B
ALA
132
n
54
ALA
132
B
ASN
133
n
55
ASN
133
B
PHE
134
n
56
PHE
134
B
SER
135
n
57
SER
135
B
VAL
136
n
58
VAL
136
B
ILE
137
n
59
ILE
137
B
PHE
138
n
60
PHE
138
B
ASP
139
n
61
ASP
139
B
ARG
140
n
62
ARG
140
B
LEU
141
n
63
LEU
141
B
GLU
142
n
64
GLU
142
B
THR
143
n
65
THR
143
B
LEU
144
n
66
LEU
144
B
ILE
145
n
67
ILE
145
B
LEU
146
n
68
LEU
146
B
LEU
147
n
69
LEU
147
B
ARG
148
n
70
ARG
148
B
ALA
149
n
71
ALA
149
B
PHE
150
n
72
PHE
150
B
THR
151
n
73
THR
151
B
GLU
152
n
74
GLU
152
B
GLU
153
n
75
GLU
153
B
GLY
154
n
76
GLY
154
B
ALA
155
n
77
ALA
155
B
ILE
156
n
78
ILE
156
B
VAL
157
n
79
VAL
157
B
GLY
158
n
80
GLY
158
B
GLU
159
n
81
GLU
159
B
ILE
160
n
82
ILE
160
B
SER
161
n
83
SER
161
B
PRO
162
n
84
PRO
162
B
LEU
163
n
85
LEU
163
B
PRO
164
n
86
PRO
164
B
SER
165
n
87
SER
165
B
LEU
166
n
88
LEU
166
B
PRO
167
n
89
PRO
167
B
GLY
168
n
90
GLY
168
B
HIS
169
n
91
HIS
169
B
THR
170
n
92
THR
170
B
ALA
171
n
93
ALA
171
B
GLU
172
n
94
GLU
172
B
ASP
173
n
95
ASP
173
B
VAL
174
n
96
VAL
174
B
LYS
175
n
97
LYS
175
B
ASN
176
n
98
ASN
176
B
ALA
177
n
99
ALA
177
B
VAL
178
n
100
VAL
178
B
GLY
179
n
101
GLY
179
B
VAL
180
n
102
VAL
180
B
LEU
181
n
103
LEU
181
B
ILE
182
n
104
ILE
182
B
GLY
183
n
105
GLY
183
B
GLY
184
n
106
GLY
184
B
LEU
185
n
107
LEU
185
B
GLU
186
n
108
GLU
186
B
TRP
187
n
109
TRP
187
B
ASN
188
n
110
ASN
188
B
ASP
189
n
111
ASP
189
B
ASN
190
n
112
ASN
190
B
THR
191
n
113
THR
191
B
VAL
192
n
114
VAL
192
B
ARG
193
n
115
ARG
193
B
VAL
194
n
116
VAL
194
B
SER
195
n
117
SER
195
B
GLU
196
n
118
GLU
196
B
THR
197
n
119
THR
197
B
LEU
198
n
120
LEU
198
B
GLN
199
n
121
GLN
199
B
ARG
200
n
122
ARG
200
B
PHE
201
n
123
PHE
201
B
ALA
202
n
124
ALA
202
B
TRP
203
n
125
TRP
203
B
ARG
204
n
126
ARG
204
B
SER
205
n
127
SER
205
B
SER
206
n
128
SER
206
B
ASN
207
n
129
ASN
207
B
4.4407
0.3464
-3.0112
0.8924
-0.9492
2.6314
-0.0741
-0.3064
0.0970
0.1212
0.0312
-0.0645
-0.0620
0.0457
0.0429
-0.1979
0.0227
-0.0282
0.1911
-0.0088
-0.1126
refined
39.4214
19.4780
17.0457
X-RAY DIFFRACTION
2.1810
0.1775
0.7655
0.8143
-0.0122
1.2415
-0.0627
-0.1129
-0.0407
0.0184
0.0520
-0.0154
-0.0814
0.0365
0.0107
-0.1872
0.0239
-0.0029
0.1479
-0.0200
-0.1018
refined
12.0410
20.8797
15.9008
X-RAY DIFFRACTION
A
79
A
1
A
205
A
127
X-RAY DIFFRACTION
1
ALL
B
86
B
8
B
207
B
129
X-RAY DIFFRACTION
2
ALL
author_defined_assembly
2
dimeric
A
MSE
79
SELENOMETHIONINE
A
MSE
1
MET
A
MSE
81
SELENOMETHIONINE
A
MSE
3
MET
A
MSE
93
SELENOMETHIONINE
A
MSE
15
MET
A
MSE
98
SELENOMETHIONINE
A
MSE
20
MET
A
MSE
104
SELENOMETHIONINE
A
MSE
26
MET
A
MSE
119
SELENOMETHIONINE
A
MSE
41
MET
A
MSE
124
SELENOMETHIONINE
A
MSE
46
MET
B
MSE
93
SELENOMETHIONINE
B
MSE
15
MET
B
MSE
98
SELENOMETHIONINE
B
MSE
20
MET
B
MSE
104
SELENOMETHIONINE
B
MSE
26
MET
B
MSE
119
SELENOMETHIONINE
B
MSE
41
MET
B
MSE
124
SELENOMETHIONINE
B
MSE
46
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ALA
112
A
N
ALA
34
A
O
LEU
115
A
O
LEU
37
A
N
CYS
116
A
N
CYS
38
A
O
SER
161
A
O
SER
83
A
O
VAL
157
A
O
VAL
79
A
N
ALA
149
A
N
ALA
71
A
O
ILE
145
A
O
ILE
67
A
N
ASN
133
A
N
ASN
55
A
O
VAL
136
A
O
VAL
58
A
N
ARG
88
A
N
ARG
10
A
N
TYR
89
A
N
TYR
11
B
O
THR
91
B
O
THR
13
B
N
ARG
88
B
N
ARG
10
B
O
VAL
136
B
O
VAL
58
B
N
ASN
133
B
N
ASN
55
B
O
ILE
145
B
O
ILE
67
B
N
ALA
149
B
N
ALA
71
B
O
VAL
157
B
O
VAL
79
B
O
SER
161
B
O
SER
83
B
N
CYS
116
B
N
CYS
38
B
O
LEU
115
B
O
LEU
37
B
N
ALA
112
B
N
ALA
34
A
O
THR
191
A
O
THR
113
A
N
ILE
128
A
N
ILE
50
A
O
VAL
136
A
O
VAL
58
A
N
ARG
88
A
N
ARG
10
A
N
TYR
89
A
N
TYR
11
B
O
THR
91
B
O
THR
13
B
N
ARG
88
B
N
ARG
10
B
O
VAL
136
B
O
VAL
58
B
N
ILE
128
B
N
ILE
50
B
O
THR
191
B
O
THR
113
1
A
SER
206
A
SER
128
1
Y
1
A
ASN
207
A
ASN
129
1
Y
1
B
MSE
79
B
MSE
1
1
Y
1
B
THR
80
B
THR
2
1
Y
1
B
MSE
81
B
MSE
3
1
Y
1
B
ALA
82
B
ALA
4
1
Y
1
B
SER
83
B
SER
5
1
Y
1
B
VAL
84
B
VAL
6
1
Y
1
B
PRO
85
B
PRO
7
1
Y
1
A
GLU
142
-108.69
-65.71
1
A
TRP
203
76.69
-174.66
1
B
GLU
142
-109.00
-72.35
39.881
1.180
0.000
0.000
1.180
0.000
-2.360
0.946
0.946
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.223
0.206
0.207
0.207
2.100
20.000
1432
28692
5.000
99.480
7.179
0.097
RANDOM
LIKELY RESIDUAL
1
THROUGHOUT
0.00
SAD
0.154
0.137
0.800
0.800
1.200
MAXIMUM LIKELIHOOD WITH PHASES
MASK
2.100
20.000
270
2229
9
0
1950
0.017
0.022
1989
1.654
1.973
2689
6.045
5.000
247
37.642
23.976
83
13.156
15.000
363
17.120
15.000
16
0.077
0.200
315
0.004
0.020
1452
0.233
0.200
889
0.298
0.200
1407
0.190
0.200
172
0.241
0.200
51
0.333
0.200
20
0.829
1.500
1246
1.614
2.000
2013
2.635
3.000
743
4.326
4.500
676
0.276
0.224
2.154
99
1940
2039
20
99.800
2.1
50
2GX9
28692
0
0
1
data reduction
Zbyszek Otwinowski
zbyszek@mix.swmed.edu
http://www.lnls.br/infra/linhasluz/denzo-hkl.htm
DENZO
package
data scaling
Zbyszek Otwinowski
zbyszek@mix.swmed.edu
http://www.lnls.br/infra/linhasluz/denzo-hkl.htm
SCALEPACK
package
phasing
George Sheldrick
gsheldr@shelx.uni-ac.gwdg.de
Fortran_77
http://shelx.uni-ac.gwdg.de/SHELX/
SHELX
package
phasing
K. Cowtan
ccp4@dl.ac.uk
Fortran_77
http://www.ccp4.ac.uk/main.html
DM
program
5.0
refinement
Murshudov, G.N.
ccp4@dl.ac.uk
Fortran_77
http://www.ccp4.ac.uk/main.html
REFMAC
program
data extraction
PDB
sw-help@rcsb.rutgers.edu
April. 3, 2006
C++
http://pdb.rutgers.edu/software/
PDB_EXTRACT
package
2.000
phasing
SHELXD
NS1 Effector Domain
X-ray structure of influenza virus NS1 effector domain
1
N
N
1
N
N
2
N
N
2
N
N
2
N
N
3
N
N
3
N
N
A
THR
94
A
THR
16
HELX_P
A
ARG
100
A
ARG
22
1
1
7
A
THR
170
A
THR
92
HELX_P
A
TRP
187
A
TRP
109
1
2
18
A
SER
195
A
SER
117
HELX_P
A
ALA
202
A
ALA
124
1
3
8
B
THR
94
B
THR
16
HELX_P
B
ARG
100
B
ARG
22
1
4
7
B
THR
170
B
THR
92
HELX_P
B
ASN
188
B
ASN
110
1
5
19
B
SER
195
B
SER
117
HELX_P
B
SER
206
B
SER
128
1
6
12
covale
1.332
both
A
MSE
79
A
C
MSE
1
1_555
A
THR
80
A
N
THR
2
1_555
covale
1.334
both
A
THR
80
A
C
THR
2
1_555
A
MSE
81
A
N
MSE
3
1_555
covale
1.334
both
A
MSE
81
A
C
MSE
3
1_555
A
ALA
82
A
N
ALA
4
1_555
covale
1.336
both
A
ASP
92
A
C
ASP
14
1_555
A
MSE
93
A
N
MSE
15
1_555
covale
1.336
both
A
MSE
93
A
C
MSE
15
1_555
A
THR
94
A
N
THR
16
1_555
covale
1.335
both
A
GLU
97
A
C
GLU
19
1_555
A
MSE
98
A
N
MSE
20
1_555
covale
1.327
both
A
MSE
98
A
C
MSE
20
1_555
A
SER
99
A
N
SER
21
1_555
covale
1.326
both
A
SER
103
A
C
SER
25
1_555
A
MSE
104
A
N
MSE
26
1_555
covale
1.328
both
A
MSE
104
A
C
MSE
26
1_555
A
LEU
105
A
N
LEU
27
1_555
covale
1.333
both
A
ARG
118
A
C
ARG
40
1_555
A
MSE
119
A
N
MSE
41
1_555
covale
1.332
both
A
MSE
119
A
C
MSE
41
1_555
A
ASP
120
A
N
ASP
42
1_555
covale
1.325
both
A
ILE
123
A
C
ILE
45
1_555
A
MSE
124
A
N
MSE
46
1_555
covale
1.330
both
A
MSE
124
A
C
MSE
46
1_555
A
ASP
125
A
N
ASP
47
1_555
covale
1.333
both
B
ASP
92
B
C
ASP
14
1_555
B
MSE
93
B
N
MSE
15
1_555
covale
1.337
both
B
MSE
93
B
C
MSE
15
1_555
B
THR
94
B
N
THR
16
1_555
covale
1.334
both
B
GLU
97
B
C
GLU
19
1_555
B
MSE
98
B
N
MSE
20
1_555
covale
1.328
both
B
MSE
98
B
C
MSE
20
1_555
B
SER
99
B
N
SER
21
1_555
covale
1.329
both
B
SER
103
B
C
SER
25
1_555
B
MSE
104
B
N
MSE
26
1_555
covale
1.333
both
B
MSE
104
B
C
MSE
26
1_555
B
LEU
105
B
N
LEU
27
1_555
covale
1.325
both
B
ARG
118
B
C
ARG
40
1_555
B
MSE
119
B
N
MSE
41
1_555
covale
1.328
both
B
MSE
119
B
C
MSE
41
1_555
B
ASP
120
B
N
ASP
42
1_555
covale
1.334
both
B
ILE
123
B
C
ILE
45
1_555
B
MSE
124
B
N
MSE
46
1_555
covale
1.333
both
B
MSE
124
B
C
MSE
46
1_555
B
ASP
125
B
N
ASP
47
1_555
TRANSCRIPTION, VIRUS/VIRAL PROTEIN
NS1, Influenza, Effector Domain, alpha-helix beta-crescent, TRANSCRIPTION, VIRUS-VIRAL PROTEIN COMPLEX
A
TRP
203
A
TRP
125
1
A
ARG
204
A
ARG
126
-5.37
Q71QT3_IAPUE
UNP
1
80
Q71QT3
MTMASVPASRYLTDMTLEEMSRDWSMLIPKQKVAGPLCIRMDQAIMDKNIILKANFSVIFDRLETLILLRAFTEEGAIVG
EISPLPSLPGHTAEDVKNAVGVLIGGLEWNDNTVRVSETLQRFAWRSSN
80
208
2GX9
79
207
Q71QT3
A
1
1
129
80
208
2GX9
79
207
Q71QT3
B
1
1
129
1
MET
modified residue
MSE
79
2GX9
A
Q71QT3
UNP
80
1
1
MET
modified residue
MSE
81
2GX9
A
Q71QT3
UNP
82
3
1
MET
modified residue
MSE
93
2GX9
A
Q71QT3
UNP
94
15
1
MET
modified residue
MSE
98
2GX9
A
Q71QT3
UNP
99
20
1
MET
modified residue
MSE
104
2GX9
A
Q71QT3
UNP
105
26
1
MET
modified residue
MSE
119
2GX9
A
Q71QT3
UNP
120
41
1
MET
modified residue
MSE
124
2GX9
A
Q71QT3
UNP
125
46
2
MET
modified residue
MSE
79
2GX9
B
Q71QT3
UNP
80
1
2
MET
modified residue
MSE
81
2GX9
B
Q71QT3
UNP
82
3
2
MET
modified residue
MSE
93
2GX9
B
Q71QT3
UNP
94
15
2
MET
modified residue
MSE
98
2GX9
B
Q71QT3
UNP
99
20
2
MET
modified residue
MSE
104
2GX9
B
Q71QT3
UNP
105
26
2
MET
modified residue
MSE
119
2GX9
B
Q71QT3
UNP
120
41
2
MET
modified residue
MSE
124
2GX9
B
Q71QT3
UNP
125
46
12
6
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
parallel
A
PRO
107
A
PRO
29
A
ALA
112
A
ALA
34
A
LEU
115
A
LEU
37
A
ASP
120
A
ASP
42
A
ILE
156
A
ILE
78
A
PRO
162
A
PRO
84
A
ARG
140
A
ARG
62
A
THR
151
A
THR
73
A
ASN
127
A
ASN
49
A
ILE
137
A
ILE
59
A
ARG
88
A
ARG
10
A
THR
91
A
THR
13
B
ARG
88
B
ARG
10
B
THR
91
B
THR
13
B
ASN
127
B
ASN
49
B
ILE
137
B
ILE
59
B
ARG
140
B
ARG
62
B
THR
151
B
THR
73
B
ILE
156
B
ILE
78
B
PRO
162
B
PRO
84
B
LEU
115
B
LEU
37
B
ASP
120
B
ASP
42
B
PRO
107
B
PRO
29
B
ALA
112
B
ALA
34
A
THR
191
A
THR
113
A
VAL
194
A
VAL
116
A
ASN
127
A
ASN
49
A
ILE
137
A
ILE
59
A
ARG
88
A
ARG
10
A
THR
91
A
THR
13
B
ARG
88
B
ARG
10
B
THR
91
B
THR
13
B
ASN
127
B
ASN
49
B
ILE
137
B
ILE
59
B
THR
191
B
THR
113
B
VAL
194
B
VAL
116
BINDING SITE FOR RESIDUE SCN A 9901
A
SCN
9901
Software
6
BINDING SITE FOR RESIDUE SCN B 9902
B
SCN
9902
Software
4
BINDING SITE FOR RESIDUE SCN A 9903
A
SCN
9903
Software
5
A
ILE
123
A
ILE
45
6
1_555
A
THR
151
A
THR
73
6
1_555
A
GLU
153
A
GLU
75
6
1_555
A
HOH
221
F
HOH
6
1_555
A
HOH
9957
F
HOH
6
1_555
B
PRO
164
B
PRO
86
6
5_655
B
LYS
126
B
LYS
48
4
1_555
B
ASN
127
B
ASN
49
4
1_555
B
GLU
152
B
GLU
74
4
1_555
B
GLU
153
B
GLU
75
4
1_555
A
TRP
102
A
TRP
24
5
1_555
A
SER
103
A
SER
25
5
1_555
A
ILE
156
A
ILE
78
5
1_555
A
HOH
9918
F
HOH
5
1_555
A
HOH
9957
F
HOH
5
1_555
95
P 43 2 2