0.018275
0.000000
0.000000
0.000000
0.006843
0.000000
0.000000
0.000000
0.021339
0.00000
0.00000
0.00000
Montano, S.P.
Cote, M.L.
Roth, M.J.
Georgiadis, M.M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
54.720
146.126
46.863
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
O
N
89
N
P
N
90
N
O
N
91
N
O
N
92
N
O
N
93
N
C
N
94
R
C
N
95
N
O
N
96
S
C
N
97
N
O
N
98
N
C
N
99
R
C
Y
100
N
N
Y
101
N
C
Y
102
N
N
Y
103
N
C
Y
104
N
C
N
105
N
N
Y
106
N
N
Y
107
N
C
Y
108
N
N
Y
109
N
C
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
O
N
125
N
P
N
126
N
O
N
127
N
O
N
128
N
O
N
129
N
C
N
130
R
C
N
131
N
O
N
132
S
C
N
133
N
O
N
134
N
C
N
135
R
C
N
136
N
N
N
137
N
C
N
138
N
O
N
139
N
N
N
140
N
C
N
141
N
N
N
142
N
C
N
143
N
C
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
P
N
160
N
O
N
161
N
O
N
162
N
O
N
163
N
C
N
164
R
C
N
165
N
O
N
166
S
C
N
167
N
O
N
168
N
C
N
169
R
C
Y
170
N
N
Y
171
N
C
Y
172
N
N
Y
173
N
C
N
174
N
C
N
175
N
O
N
176
N
N
N
177
N
C
N
178
N
N
N
179
N
N
Y
180
N
C
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
O
N
196
N
P
N
197
N
O
N
198
N
O
N
199
N
O
N
200
N
C
N
201
R
C
N
202
N
O
N
203
S
C
N
204
N
O
N
205
N
C
N
206
R
C
N
207
N
N
N
208
N
C
N
209
N
O
N
210
N
N
N
211
N
C
N
212
N
O
N
213
N
C
N
214
N
C
N
215
N
C
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
N
N
232
S
C
N
233
N
C
N
234
N
O
N
235
N
C
N
236
N
C
N
237
N
C
N
238
N
O
N
239
N
N
N
240
N
O
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
N
N
252
S
C
N
253
N
C
N
254
N
O
N
255
N
C
N
256
N
C
N
257
N
C
N
258
N
O
N
259
N
O
N
260
N
O
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
N
N
271
N
C
N
272
N
C
N
273
N
O
N
274
N
O
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
N
N
281
S
C
N
282
N
C
N
283
N
O
N
284
N
C
Y
285
N
C
Y
286
N
N
Y
287
N
C
Y
288
N
C
Y
289
N
N
N
290
N
O
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
O
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
S
C
N
309
N
C
N
310
N
C
N
311
N
C
N
312
N
O
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
N
N
327
S
C
N
328
N
C
N
329
N
O
N
330
N
C
N
331
N
C
N
332
N
C
N
333
N
C
N
334
N
O
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
N
C
N
353
N
C
N
354
N
C
N
355
N
C
N
356
N
N
N
357
N
O
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
N
N
374
S
C
N
375
N
C
N
376
N
O
N
377
N
C
N
378
N
C
N
379
N
S
N
380
N
C
N
381
N
O
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
N
N
394
S
C
N
395
N
C
N
396
N
O
N
397
N
C
Y
398
N
C
Y
399
N
C
Y
400
N
C
Y
401
N
C
Y
402
N
C
Y
403
N
C
N
404
N
O
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
N
N
417
S
C
N
418
N
C
N
419
N
O
N
420
N
C
N
421
N
C
N
422
N
C
N
423
N
O
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
N
N
434
S
C
N
435
N
C
N
436
N
O
N
437
N
C
N
438
N
O
N
439
N
O
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
N
N
448
S
C
N
449
N
C
N
450
N
O
N
451
R
C
N
452
N
O
N
453
N
C
N
454
N
O
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
N
N
465
S
C
N
466
N
C
N
467
N
O
N
468
N
C
Y
469
N
C
Y
470
N
C
Y
471
N
C
Y
472
N
N
Y
473
N
C
Y
474
N
C
Y
475
N
C
Y
476
N
C
Y
477
N
C
N
478
N
O
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
H
N
487
N
H
N
488
N
H
N
489
N
H
N
490
N
H
N
491
N
N
N
492
S
C
N
493
N
C
N
494
N
O
N
495
N
C
Y
496
N
C
Y
497
N
C
Y
498
N
C
Y
499
N
C
Y
500
N
C
Y
501
N
C
N
502
N
O
N
503
N
O
N
504
N
H
N
505
N
H
N
506
N
H
N
507
N
H
N
508
N
H
N
509
N
H
N
510
N
H
N
511
N
H
N
512
N
H
N
513
N
H
N
514
N
H
N
515
N
N
N
516
S
C
N
517
N
C
N
518
N
O
N
519
N
C
N
520
N
C
N
521
N
C
N
522
N
O
N
523
N
H
N
524
N
H
N
525
N
H
N
526
N
H
N
527
N
H
N
528
N
H
N
529
N
H
N
530
N
H
N
531
N
H
N
532
N
H
N
533
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
doub
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
Y
106
N
sing
Y
107
N
sing
Y
108
N
doub
N
109
N
sing
Y
110
N
sing
Y
111
N
sing
Y
112
N
doub
N
113
N
sing
Y
114
N
doub
N
115
N
sing
N
116
N
sing
Y
117
N
sing
Y
118
N
doub
N
119
N
sing
Y
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
doub
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
doub
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
doub
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
Y
179
N
sing
Y
180
N
sing
Y
181
N
doub
N
182
N
sing
Y
183
N
sing
N
184
N
sing
Y
185
N
doub
N
186
N
doub
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
doub
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
doub
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
doub
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
doub
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
doub
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
doub
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
doub
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
doub
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
doub
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
doub
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
Y
289
N
sing
Y
290
N
doub
Y
291
N
doub
N
292
N
sing
Y
293
N
sing
N
294
N
sing
Y
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
doub
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
doub
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
doub
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
doub
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
doub
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
Y
397
N
doub
Y
398
N
sing
Y
399
N
sing
N
400
N
sing
Y
401
N
doub
N
402
N
sing
Y
403
N
doub
N
404
N
sing
Y
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
doub
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
doub
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
doub
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
doub
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
Y
466
N
doub
Y
467
N
sing
Y
468
N
sing
N
469
N
sing
Y
470
N
doub
Y
471
N
sing
Y
472
N
sing
N
473
N
sing
Y
474
N
sing
Y
475
N
doub
N
476
N
sing
Y
477
N
doub
N
478
N
sing
Y
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
doub
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
Y
494
N
doub
Y
495
N
sing
Y
496
N
sing
N
497
N
sing
Y
498
N
doub
N
499
N
sing
Y
500
N
doub
N
501
N
sing
Y
502
N
sing
N
503
N
sing
N
504
N
sing
N
505
N
sing
N
506
N
sing
N
507
N
sing
N
508
N
sing
N
509
N
sing
N
510
N
sing
N
511
N
sing
N
512
N
sing
N
513
N
doub
N
514
N
sing
N
515
N
sing
N
516
N
sing
N
517
N
sing
N
518
N
sing
N
519
N
sing
N
520
N
sing
N
521
N
sing
N
522
N
sing
N
523
N
sing
N
524
N
sing
UK
Nucleic Acids Res.
NARHAD
0389
0305-1048
34
5353
5360
10.1093/nar/gkl693
17003051
Crystal structures of oligonucleotides including the integrase processing site of the Moloney murine leukemia virus.
2006
10.2210/pdb2fvp/pdb
pdb_00002fvp
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
93
1
IMAGE PLATE
2003-05-06
RIGAKU RAXIS IV
confocal mirrors
SINGLE WAVELENGTH
M
x-ray
1
1.54
1.0
1.54
ROTATING ANODE
RIGAKU
4896.216
5'-D(*TP*TP*TP*CP*AP*TP*TP*GP*CP*AP*AP*TP*GP*AP*AP*A)-3'
1
syn
polymer
28934.287
Reverse transcriptase
2.7.7.49
1
man
polymer
18.015
water
170
nat
water
RT
no
no
(DT)(DT)(DT)(DC)(DA)(DT)(DT)(DG)(DC)(DA)(DA)(DT)(DG)(DA)(DA)(DA)
TTTCATTGCAATGAAA
B
polydeoxyribonucleotide
no
no
TWLSDFPQAWAETGGMGLAVRQAPLIIPLKATSTPVSIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKK
PGTNDYRPVQDLREVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGISGQL
TWTRLPQGFKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDLLLAATSELDCQQGTRALLQTLGNLGYRASAKKAQICQ
KQVKYLGYLLKEGQR
TWLSDFPQAWAETGGMGLAVRQAPLIIPLKATSTPVSIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKK
PGTNDYRPVQDLREVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGISGQL
TWTRLPQGFKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDLLLAATSELDCQQGTRALLQTLGNLGYRASAKKAQICQ
KQVKYLGYLLKEGQR
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Gammaretrovirus
Murine leukemia virus
Escherichia
sample
POL
11801
Moloney murine leukemia virus
562
Escherichia coli
plasmid
pET15b
1
2.75
55.34
VAPOR DIFFUSION, HANGING DROP
6.5
PEG 4000, magnesium acetate, ADA pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
PEG 4000
1
magnesium acetate
1
ADA
1
H2O
1
PEG 4000
2
magnesium acetate
2
ADA
2
H2O
2
-19.058
1
20
B
1
B
16
-1.449
B_DT1:DA16_B
1
-7.940
-0.096
-0.016
0.050
-10.870
1
20
B
2
B
15
10.427
B_DT2:DA15_B
2
-7.462
-0.048
-0.348
-0.178
-2.502
1
20
B
3
B
14
14.186
B_DT3:DA14_B
3
-9.458
-0.135
-0.237
-0.002
8.156
1
19
B
4
B
13
4.123
B_DC4:DG13_B
4
-14.543
-0.220
-0.581
-0.087
-5.297
1
20
B
5
B
12
1.385
B_DA5:DT12_B
5
-9.725
-0.193
-0.203
0.183
-1.068
1
20
B
6
B
11
-1.604
B_DT6:DA11_B
6
-19.614
-0.876
-0.039
0.054
3.807
1
20
B
7
B
10
-4.322
B_DT7:DA10_B
7
-11.359
0.015
-0.008
-0.158
-2.619
1
19
B
8
B
9
-1.966
B_DG8:DC9_B
8
3.979
-1.188
0.193
-0.554
2.619
1
19
B
9
B
8
-1.966
B_DC9:DG8_B
9
3.979
1.188
0.193
-0.554
-3.807
1
20
B
10
B
7
-4.322
B_DA10:DT7_B
10
-11.359
-0.015
-0.008
-0.158
1.068
1
20
B
11
B
6
-1.604
B_DA11:DT6_B
11
-19.614
0.876
-0.039
0.054
5.297
1
20
B
12
B
5
1.385
B_DT12:DA5_B
12
-9.725
0.193
-0.203
0.183
-8.156
1
19
B
13
B
4
4.123
B_DG13:DC4_B
13
-14.543
0.220
-0.581
-0.087
2.502
1
20
B
14
B
3
14.186
B_DA14:DT3_B
14
-9.458
0.135
-0.237
-0.002
10.870
1
20
B
15
B
2
10.427
B_DA15:DT2_B
15
-7.462
0.048
-0.348
-0.178
19.058
1
20
B
16
B
1
-1.449
B_DA16:DT1_B
16
-7.940
0.096
-0.016
0.050
3.221
35.242
B
B
1
2
12.320
B
B
16
15
3.158
7.400
0.784
0.397
BB_DT1DT2:DA15DA16_BB
1
2.606
-4.339
34.385
-0.430
-0.912
2.975
29.797
B
B
2
3
12.950
B
B
15
14
3.033
6.604
-0.020
0.080
BB_DT2DT3:DA14DA15_BB
2
-1.524
2.989
29.033
-1.127
-0.257
2.926
34.215
B
B
3
4
5.858
B
B
14
13
2.919
3.441
-0.273
0.212
BB_DT3DC4:DG13DA14_BB
3
-0.043
0.074
34.046
-0.125
0.458
3.453
33.167
B
B
4
5
17.570
B
B
13
12
3.713
9.878
0.097
-0.298
BB_DC4DA5:DT12DG13_BB
4
-2.084
3.706
31.634
-2.386
-0.563
3.138
32.226
B
B
5
6
-4.206
B
B
12
11
3.100
-2.332
-0.608
-0.330
BB_DA5DT6:DA11DT12_BB
5
-1.395
2.516
32.114
-0.199
0.859
3.226
39.652
B
B
6
7
-0.098
B
B
11
10
3.219
-0.066
0.294
-0.668
BB_DT6DT7:DA10DA11_BB
6
0.959
-1.414
39.640
-0.977
-0.323
3.479
32.869
B
B
7
8
-3.918
B
B
10
9
3.446
-2.214
1.048
0.171
BB_DT7DG8:DC9DA10_BB
7
1.791
-3.170
32.749
0.704
-1.528
3.250
36.560
B
B
8
9
2.219
B
B
9
8
3.251
1.392
0.000
0.044
BB_DG8DC9:DG8DC9_BB
8
0.000
0.000
36.535
-0.121
0.000
3.479
32.869
B
B
9
10
-3.918
B
B
8
7
3.446
-2.214
-1.048
0.171
BB_DC9DA10:DT7DG8_BB
9
-1.791
3.170
32.749
0.704
1.528
3.226
39.652
B
B
10
11
-0.098
B
B
7
6
3.219
-0.066
-0.294
-0.668
BB_DA10DA11:DT6DT7_BB
10
-0.959
1.414
39.640
-0.977
0.323
3.138
32.226
B
B
11
12
-4.206
B
B
6
5
3.100
-2.332
0.608
-0.330
BB_DA11DT12:DA5DT6_BB
11
1.395
-2.516
32.114
-0.199
-0.859
3.453
33.167
B
B
12
13
17.570
B
B
5
4
3.713
9.879
-0.097
-0.298
BB_DT12DG13:DC4DA5_BB
12
2.084
-3.706
31.634
-2.386
0.563
2.926
34.215
B
B
13
14
5.858
B
B
4
3
2.919
3.441
0.273
0.212
BB_DG13DA14:DT3DC4_BB
13
0.043
-0.074
34.046
-0.125
-0.458
2.975
29.797
B
B
14
15
12.950
B
B
3
2
3.033
6.604
0.020
0.080
BB_DA14DA15:DT2DT3_BB
14
1.524
-2.989
29.033
-1.127
0.257
3.221
35.242
B
B
15
16
12.320
B
B
2
1
3.158
7.400
-0.784
0.397
BB_DA15DA16:DT1DT2_BB
15
-2.606
4.339
34.385
-0.430
0.912
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Refinement description
1
0
2006-12-12
1
1
2008-05-01
1
2
2011-07-13
1
3
2023-08-30
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
RCSB
Y
RCSB
2006-01-31
REL
REL
HOH
water
1D1U
pdb entry 1d1u
PDB
experimental model
HOH
23
3
HOH
HOH
23
B
HOH
30
3
HOH
HOH
30
B
HOH
72
3
HOH
HOH
72
B
HOH
81
3
HOH
HOH
81
B
HOH
100
3
HOH
HOH
100
B
HOH
102
3
HOH
HOH
102
B
HOH
146
3
HOH
HOH
146
B
HOH
1
3
HOH
HOH
279
A
HOH
2
3
HOH
HOH
280
A
HOH
3
3
HOH
HOH
281
A
HOH
4
3
HOH
HOH
282
A
HOH
5
3
HOH
HOH
283
A
HOH
6
3
HOH
HOH
284
A
HOH
7
3
HOH
HOH
285
A
HOH
8
3
HOH
HOH
286
A
HOH
9
3
HOH
HOH
287
A
HOH
10
3
HOH
HOH
288
A
HOH
11
3
HOH
HOH
289
A
HOH
12
3
HOH
HOH
290
A
HOH
13
3
HOH
HOH
291
A
HOH
14
3
HOH
HOH
292
A
HOH
15
3
HOH
HOH
293
A
HOH
16
3
HOH
HOH
294
A
HOH
17
3
HOH
HOH
295
A
HOH
18
3
HOH
HOH
296
A
HOH
19
3
HOH
HOH
297
A
HOH
20
3
HOH
HOH
298
A
HOH
21
3
HOH
HOH
299
A
HOH
22
3
HOH
HOH
300
A
HOH
24
3
HOH
HOH
301
A
HOH
25
3
HOH
HOH
302
A
HOH
26
3
HOH
HOH
303
A
HOH
27
3
HOH
HOH
304
A
HOH
28
3
HOH
HOH
305
A
HOH
29
3
HOH
HOH
306
A
HOH
31
3
HOH
HOH
307
A
HOH
32
3
HOH
HOH
308
A
HOH
33
3
HOH
HOH
309
A
HOH
34
3
HOH
HOH
310
A
HOH
35
3
HOH
HOH
311
A
HOH
36
3
HOH
HOH
312
A
HOH
37
3
HOH
HOH
313
A
HOH
38
3
HOH
HOH
314
A
HOH
39
3
HOH
HOH
315
A
HOH
40
3
HOH
HOH
316
A
HOH
41
3
HOH
HOH
317
A
HOH
42
3
HOH
HOH
318
A
HOH
43
3
HOH
HOH
319
A
HOH
44
3
HOH
HOH
320
A
HOH
45
3
HOH
HOH
321
A
HOH
46
3
HOH
HOH
322
A
HOH
47
3
HOH
HOH
323
A
HOH
48
3
HOH
HOH
324
A
HOH
49
3
HOH
HOH
325
A
HOH
50
3
HOH
HOH
326
A
HOH
51
3
HOH
HOH
327
A
HOH
52
3
HOH
HOH
328
A
HOH
53
3
HOH
HOH
329
A
HOH
54
3
HOH
HOH
330
A
HOH
55
3
HOH
HOH
331
A
HOH
56
3
HOH
HOH
332
A
HOH
57
3
HOH
HOH
333
A
HOH
58
3
HOH
HOH
334
A
HOH
59
3
HOH
HOH
335
A
HOH
60
3
HOH
HOH
336
A
HOH
61
3
HOH
HOH
337
A
HOH
62
3
HOH
HOH
338
A
HOH
63
3
HOH
HOH
339
A
HOH
64
3
HOH
HOH
340
A
HOH
65
3
HOH
HOH
341
A
HOH
66
3
HOH
HOH
342
A
HOH
67
3
HOH
HOH
343
A
HOH
68
3
HOH
HOH
344
A
HOH
69
3
HOH
HOH
345
A
HOH
70
3
HOH
HOH
346
A
HOH
71
3
HOH
HOH
347
A
HOH
73
3
HOH
HOH
348
A
HOH
74
3
HOH
HOH
349
A
HOH
75
3
HOH
HOH
350
A
HOH
76
3
HOH
HOH
351
A
HOH
77
3
HOH
HOH
352
A
HOH
78
3
HOH
HOH
353
A
HOH
79
3
HOH
HOH
354
A
HOH
80
3
HOH
HOH
355
A
HOH
82
3
HOH
HOH
356
A
HOH
83
3
HOH
HOH
357
A
HOH
84
3
HOH
HOH
358
A
HOH
85
3
HOH
HOH
359
A
HOH
86
3
HOH
HOH
360
A
HOH
87
3
HOH
HOH
361
A
HOH
88
3
HOH
HOH
362
A
HOH
89
3
HOH
HOH
363
A
HOH
90
3
HOH
HOH
364
A
HOH
91
3
HOH
HOH
365
A
HOH
92
3
HOH
HOH
366
A
HOH
93
3
HOH
HOH
367
A
HOH
94
3
HOH
HOH
368
A
HOH
95
3
HOH
HOH
369
A
HOH
96
3
HOH
HOH
370
A
HOH
97
3
HOH
HOH
371
A
HOH
98
3
HOH
HOH
372
A
HOH
99
3
HOH
HOH
373
A
HOH
101
3
HOH
HOH
374
A
HOH
103
3
HOH
HOH
375
A
HOH
104
3
HOH
HOH
376
A
HOH
105
3
HOH
HOH
377
A
HOH
106
3
HOH
HOH
378
A
HOH
107
3
HOH
HOH
379
A
HOH
108
3
HOH
HOH
380
A
HOH
109
3
HOH
HOH
381
A
HOH
110
3
HOH
HOH
382
A
HOH
111
3
HOH
HOH
383
A
HOH
112
3
HOH
HOH
384
A
HOH
113
3
HOH
HOH
385
A
HOH
114
3
HOH
HOH
386
A
HOH
115
3
HOH
HOH
387
A
HOH
116
3
HOH
HOH
388
A
HOH
117
3
HOH
HOH
389
A
HOH
118
3
HOH
HOH
390
A
HOH
119
3
HOH
HOH
391
A
HOH
120
3
HOH
HOH
392
A
HOH
121
3
HOH
HOH
393
A
HOH
122
3
HOH
HOH
394
A
HOH
123
3
HOH
HOH
395
A
HOH
124
3
HOH
HOH
396
A
HOH
125
3
HOH
HOH
397
A
HOH
126
3
HOH
HOH
398
A
HOH
127
3
HOH
HOH
399
A
HOH
128
3
HOH
HOH
400
A
HOH
129
3
HOH
HOH
401
A
HOH
139
3
HOH
HOH
402
A
HOH
131
3
HOH
HOH
403
A
HOH
132
3
HOH
HOH
404
A
HOH
133
3
HOH
HOH
405
A
HOH
134
3
HOH
HOH
406
A
HOH
135
3
HOH
HOH
407
A
HOH
136
3
HOH
HOH
408
A
HOH
137
3
HOH
HOH
409
A
HOH
138
3
HOH
HOH
410
A
HOH
140
3
HOH
HOH
411
A
HOH
141
3
HOH
HOH
412
A
HOH
142
3
HOH
HOH
413
A
HOH
143
3
HOH
HOH
414
A
HOH
144
3
HOH
HOH
415
A
HOH
145
3
HOH
HOH
416
A
HOH
147
3
HOH
HOH
417
A
HOH
148
3
HOH
HOH
418
A
HOH
149
3
HOH
HOH
419
A
HOH
150
3
HOH
HOH
420
A
HOH
151
3
HOH
HOH
421
A
HOH
152
3
HOH
HOH
422
A
HOH
153
3
HOH
HOH
423
A
HOH
154
3
HOH
HOH
424
A
HOH
155
3
HOH
HOH
425
A
HOH
156
3
HOH
HOH
426
A
HOH
157
3
HOH
HOH
427
A
HOH
158
3
HOH
HOH
428
A
HOH
159
3
HOH
HOH
429
A
HOH
160
3
HOH
HOH
430
A
HOH
161
3
HOH
HOH
431
A
HOH
162
3
HOH
HOH
432
A
HOH
163
3
HOH
HOH
433
A
HOH
164
3
HOH
HOH
434
A
HOH
165
3
HOH
HOH
435
A
HOH
166
3
HOH
HOH
436
A
HOH
167
3
HOH
HOH
437
A
HOH
168
3
HOH
HOH
438
A
HOH
169
3
HOH
HOH
439
A
HOH
170
3
HOH
HOH
440
A
HOH
171
3
HOH
HOH
441
A
THY
1
n
1
DT
1
B
THY
2
n
2
DT
2
B
THY
3
n
3
DT
3
B
CYT
4
n
4
DC
4
B
ADE
5
n
5
DA
5
B
THY
6
n
6
DT
6
B
THY
7
n
7
DT
7
B
GUA
8
n
8
DG
8
B
CYT
9
n
9
DC
9
B
ADE
10
n
10
DA
10
B
ADE
11
n
11
DA
11
B
THY
12
n
12
DT
12
B
GUA
13
n
13
DG
13
B
ADE
14
n
14
DA
14
B
ADE
15
n
15
DA
15
B
ADE
16
n
16
DA
16
B
THR
24
n
1
THR
24
A
TRP
25
n
2
TRP
25
A
LEU
26
n
3
LEU
26
A
SER
27
n
4
SER
27
A
ASP
28
n
5
ASP
28
A
PHE
29
n
6
PHE
29
A
PRO
30
n
7
PRO
30
A
GLN
31
n
8
GLN
31
A
ALA
32
n
9
ALA
32
A
TRP
33
n
10
TRP
33
A
ALA
34
n
11
ALA
34
A
GLU
35
n
12
GLU
35
A
THR
36
n
13
THR
36
A
GLY
37
n
14
GLY
37
A
GLY
38
n
15
GLY
38
A
MET
39
n
16
MET
39
A
GLY
40
n
17
GLY
40
A
LEU
41
n
18
LEU
41
A
ALA
42
n
19
ALA
42
A
VAL
43
n
20
VAL
43
A
ARG
44
n
21
ARG
44
A
GLN
45
n
22
GLN
45
A
ALA
46
n
23
ALA
46
A
PRO
47
n
24
PRO
47
A
LEU
48
n
25
LEU
48
A
ILE
49
n
26
ILE
49
A
ILE
50
n
27
ILE
50
A
PRO
51
n
28
PRO
51
A
LEU
52
n
29
LEU
52
A
LYS
53
n
30
LYS
53
A
ALA
54
n
31
ALA
54
A
THR
55
n
32
THR
55
A
SER
56
n
33
SER
56
A
THR
57
n
34
THR
57
A
PRO
58
n
35
PRO
58
A
VAL
59
n
36
VAL
59
A
SER
60
n
37
SER
60
A
ILE
61
n
38
ILE
61
A
LYS
62
n
39
LYS
62
A
GLN
63
n
40
GLN
63
A
TYR
64
n
41
TYR
64
A
PRO
65
n
42
PRO
65
A
MET
66
n
43
MET
66
A
SER
67
n
44
SER
67
A
GLN
68
n
45
GLN
68
A
GLU
69
n
46
GLU
69
A
ALA
70
n
47
ALA
70
A
ARG
71
n
48
ARG
71
A
LEU
72
n
49
LEU
72
A
GLY
73
n
50
GLY
73
A
ILE
74
n
51
ILE
74
A
LYS
75
n
52
LYS
75
A
PRO
76
n
53
PRO
76
A
HIS
77
n
54
HIS
77
A
ILE
78
n
55
ILE
78
A
GLN
79
n
56
GLN
79
A
ARG
80
n
57
ARG
80
A
LEU
81
n
58
LEU
81
A
LEU
82
n
59
LEU
82
A
ASP
83
n
60
ASP
83
A
GLN
84
n
61
GLN
84
A
GLY
85
n
62
GLY
85
A
ILE
86
n
63
ILE
86
A
LEU
87
n
64
LEU
87
A
VAL
88
n
65
VAL
88
A
PRO
89
n
66
PRO
89
A
CYS
90
n
67
CYS
90
A
GLN
91
n
68
GLN
91
A
SER
92
n
69
SER
92
A
PRO
93
n
70
PRO
93
A
TRP
94
n
71
TRP
94
A
ASN
95
n
72
ASN
95
A
THR
96
n
73
THR
96
A
PRO
97
n
74
PRO
97
A
LEU
98
n
75
LEU
98
A
LEU
99
n
76
LEU
99
A
PRO
100
n
77
PRO
100
A
VAL
101
n
78
VAL
101
A
LYS
102
n
79
LYS
102
A
LYS
103
n
80
LYS
103
A
PRO
104
n
81
PRO
104
A
GLY
105
n
82
GLY
105
A
THR
106
n
83
THR
106
A
ASN
107
n
84
ASN
107
A
ASP
108
n
85
ASP
108
A
TYR
109
n
86
TYR
109
A
ARG
110
n
87
ARG
110
A
PRO
111
n
88
PRO
111
A
VAL
112
n
89
VAL
112
A
GLN
113
n
90
GLN
113
A
ASP
114
n
91
ASP
114
A
LEU
115
n
92
LEU
115
A
ARG
116
n
93
ARG
116
A
GLU
117
n
94
GLU
117
A
VAL
118
n
95
VAL
118
A
ASN
119
n
96
ASN
119
A
LYS
120
n
97
LYS
120
A
ARG
121
n
98
ARG
121
A
VAL
122
n
99
VAL
122
A
GLU
123
n
100
GLU
123
A
ASP
124
n
101
ASP
124
A
ILE
125
n
102
ILE
125
A
HIS
126
n
103
HIS
126
A
PRO
127
n
104
PRO
127
A
THR
128
n
105
THR
128
A
VAL
129
n
106
VAL
129
A
PRO
130
n
107
PRO
130
A
ASN
131
n
108
ASN
131
A
PRO
132
n
109
PRO
132
A
TYR
133
n
110
TYR
133
A
ASN
134
n
111
ASN
134
A
LEU
135
n
112
LEU
135
A
LEU
136
n
113
LEU
136
A
SER
137
n
114
SER
137
A
GLY
138
n
115
GLY
138
A
LEU
139
n
116
LEU
139
A
PRO
140
n
117
PRO
140
A
PRO
141
n
118
PRO
141
A
SER
142
n
119
SER
142
A
HIS
143
n
120
HIS
143
A
GLN
144
n
121
GLN
144
A
TRP
145
n
122
TRP
145
A
TYR
146
n
123
TYR
146
A
THR
147
n
124
THR
147
A
VAL
148
n
125
VAL
148
A
LEU
149
n
126
LEU
149
A
ASP
150
n
127
ASP
150
A
LEU
151
n
128
LEU
151
A
LYS
152
n
129
LYS
152
A
ASP
153
n
130
ASP
153
A
ALA
154
n
131
ALA
154
A
PHE
155
n
132
PHE
155
A
PHE
156
n
133
PHE
156
A
CYS
157
n
134
CYS
157
A
LEU
158
n
135
LEU
158
A
ARG
159
n
136
ARG
159
A
LEU
160
n
137
LEU
160
A
HIS
161
n
138
HIS
161
A
PRO
162
n
139
PRO
162
A
THR
163
n
140
THR
163
A
SER
164
n
141
SER
164
A
GLN
165
n
142
GLN
165
A
PRO
166
n
143
PRO
166
A
LEU
167
n
144
LEU
167
A
PHE
168
n
145
PHE
168
A
ALA
169
n
146
ALA
169
A
PHE
170
n
147
PHE
170
A
GLU
171
n
148
GLU
171
A
TRP
172
n
149
TRP
172
A
ARG
173
n
150
ARG
173
A
ASP
174
n
151
ASP
174
A
PRO
175
n
152
PRO
175
A
GLU
176
n
153
GLU
176
A
MET
177
n
154
MET
177
A
GLY
178
n
155
GLY
178
A
ILE
179
n
156
ILE
179
A
SER
180
n
157
SER
180
A
GLY
181
n
158
GLY
181
A
GLN
182
n
159
GLN
182
A
LEU
183
n
160
LEU
183
A
THR
184
n
161
THR
184
A
TRP
185
n
162
TRP
185
A
THR
186
n
163
THR
186
A
ARG
187
n
164
ARG
187
A
LEU
188
n
165
LEU
188
A
PRO
189
n
166
PRO
189
A
GLN
190
n
167
GLN
190
A
GLY
191
n
168
GLY
191
A
PHE
192
n
169
PHE
192
A
LYS
193
n
170
LYS
193
A
ASN
194
n
171
ASN
194
A
SER
195
n
172
SER
195
A
PRO
196
n
173
PRO
196
A
THR
197
n
174
THR
197
A
LEU
198
n
175
LEU
198
A
PHE
199
n
176
PHE
199
A
ASP
200
n
177
ASP
200
A
GLU
201
n
178
GLU
201
A
ALA
202
n
179
ALA
202
A
LEU
203
n
180
LEU
203
A
HIS
204
n
181
HIS
204
A
ARG
205
n
182
ARG
205
A
ASP
206
n
183
ASP
206
A
LEU
207
n
184
LEU
207
A
ALA
208
n
185
ALA
208
A
ASP
209
n
186
ASP
209
A
PHE
210
n
187
PHE
210
A
ARG
211
n
188
ARG
211
A
ILE
212
n
189
ILE
212
A
GLN
213
n
190
GLN
213
A
HIS
214
n
191
HIS
214
A
PRO
215
n
192
PRO
215
A
ASP
216
n
193
ASP
216
A
LEU
217
n
194
LEU
217
A
ILE
218
n
195
ILE
218
A
LEU
219
n
196
LEU
219
A
LEU
220
n
197
LEU
220
A
GLN
221
n
198
GLN
221
A
TYR
222
n
199
TYR
222
A
VAL
223
n
200
VAL
223
A
ASP
224
n
201
ASP
224
A
ASP
225
n
202
ASP
225
A
LEU
226
n
203
LEU
226
A
LEU
227
n
204
LEU
227
A
LEU
228
n
205
LEU
228
A
ALA
229
n
206
ALA
229
A
ALA
230
n
207
ALA
230
A
THR
231
n
208
THR
231
A
SER
232
n
209
SER
232
A
GLU
233
n
210
GLU
233
A
LEU
234
n
211
LEU
234
A
ASP
235
n
212
ASP
235
A
CYS
236
n
213
CYS
236
A
GLN
237
n
214
GLN
237
A
GLN
238
n
215
GLN
238
A
GLY
239
n
216
GLY
239
A
THR
240
n
217
THR
240
A
ARG
241
n
218
ARG
241
A
ALA
242
n
219
ALA
242
A
LEU
243
n
220
LEU
243
A
LEU
244
n
221
LEU
244
A
GLN
245
n
222
GLN
245
A
THR
246
n
223
THR
246
A
LEU
247
n
224
LEU
247
A
GLY
248
n
225
GLY
248
A
ASN
249
n
226
ASN
249
A
LEU
250
n
227
LEU
250
A
GLY
251
n
228
GLY
251
A
TYR
252
n
229
TYR
252
A
ARG
253
n
230
ARG
253
A
ALA
254
n
231
ALA
254
A
SER
255
n
232
SER
255
A
ALA
256
n
233
ALA
256
A
LYS
257
n
234
LYS
257
A
LYS
258
n
235
LYS
258
A
ALA
259
n
236
ALA
259
A
GLN
260
n
237
GLN
260
A
ILE
261
n
238
ILE
261
A
CYS
262
n
239
CYS
262
A
GLN
263
n
240
GLN
263
A
LYS
264
n
241
LYS
264
A
GLN
265
n
242
GLN
265
A
VAL
266
n
243
VAL
266
A
LYS
267
n
244
LYS
267
A
TYR
268
n
245
TYR
268
A
LEU
269
n
246
LEU
269
A
GLY
270
n
247
GLY
270
A
TYR
271
n
248
TYR
271
A
LEU
272
n
249
LEU
272
A
LEU
273
n
250
LEU
273
A
LYS
274
n
251
LYS
274
A
GLU
275
n
252
GLU
275
A
GLY
276
n
253
GLY
276
A
GLN
277
n
254
GLN
277
A
ARG
278
n
255
ARG
278
A
author_defined_assembly
4
tetrameric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
2_765
-x+2,-y+1,z
crystal symmetry operation
109.4400000000
146.1260000000
0.0000000000
A
N
VAL
88
B
N
VAL
65
A
O
THR
184
B
O
THR
161
A
O
LEU
183
B
O
LEU
160
A
N
PHE
170
B
N
PHE
147
A
N
LEU
99
B
N
LEU
76
A
O
VAL
112
B
O
VAL
89
A
N
ILE
218
B
N
ILE
195
A
O
ALA
229
B
O
ALA
206
A
O
LEU
228
B
O
LEU
205
A
N
THR
147
B
N
THR
124
A
N
TYR
146
B
N
TYR
123
A
O
GLN
263
B
O
GLN
240
A
N
VAL
266
B
N
VAL
243
A
O
LEU
273
B
O
LEU
250
1
A
LEU
41
-170.29
114.79
1
A
PRO
104
-28.94
100.88
1
A
PRO
175
-84.71
-76.35
1
A
VAL
223
57.93
-109.22
1
A
CYS
262
35.98
65.16
1
A
LYS
274
-175.16
134.31
0.2876
0.2237
0.2876
0.2876
2.25
50
900
18550
17609
random
1
0
MOLECULAR REPLACEMENT
pdb entry 1d1u
Engh & Huber
2.25
50
170
2536
0
325
2041
0.006566
1.37284
2.25
50.0
2FVP
18597
18291
-3.0
-3.0
1
98.4
2.25
2.33
96.9
data reduction
DENZO
data scaling
SCALEPACK
phasing
AMoRE
refinement
CNS
1.0
A Structural Study of the CA Dinucleotide Step in the Integrase Processing Site of Moloney Murine Leukemia Virus
1
N
N
2
N
N
3
N
N
3
N
N
The second part of the biological assembly is generated by performing this transformation on the asymmetric unit:
symmetry operator: -x, -y, z
translation vector: 2 1 -1
A
THR
24
B
THR
1
HELX_P
A
PHE
29
B
PHE
6
1
1
6
A
TRP
33
B
TRP
10
HELX_P
A
GLY
38
B
GLY
15
1
2
6
A
SER
67
B
SER
44
HELX_P
A
GLN
84
B
GLN
61
1
3
18
A
LEU
115
B
LEU
92
HELX_P
A
LYS
120
B
LYS
97
1
4
6
A
ASN
131
B
ASN
108
HELX_P
A
GLY
138
B
GLY
115
1
5
8
A
ALA
154
B
ALA
131
HELX_P
A
LEU
158
B
LEU
135
5
6
5
A
SER
164
B
SER
141
HELX_P
A
ALA
169
B
ALA
146
5
7
6
A
ASN
194
B
ASN
171
HELX_P
A
LEU
207
B
LEU
184
1
8
14
A
LEU
207
B
LEU
184
HELX_P
A
HIS
214
B
HIS
191
1
9
8
A
SER
232
B
SER
209
HELX_P
A
GLY
251
B
GLY
228
1
10
20
hydrog
WATSON-CRICK
B
DT
1
A
N3
DT
1
1_555
B
DA
16
A
N1
DA
16
2_765
hydrog
WATSON-CRICK
B
DT
1
A
O4
DT
1
1_555
B
DA
16
A
N6
DA
16
2_765
hydrog
WATSON-CRICK
B
DT
2
A
N3
DT
2
1_555
B
DA
15
A
N1
DA
15
2_765
hydrog
WATSON-CRICK
B
DT
2
A
O4
DT
2
1_555
B
DA
15
A
N6
DA
15
2_765
hydrog
WATSON-CRICK
B
DT
3
A
N3
DT
3
1_555
B
DA
14
A
N1
DA
14
2_765
hydrog
WATSON-CRICK
B
DT
3
A
O4
DT
3
1_555
B
DA
14
A
N6
DA
14
2_765
hydrog
WATSON-CRICK
B
DC
4
A
N3
DC
4
1_555
B
DG
13
A
N1
DG
13
2_765
hydrog
WATSON-CRICK
B
DC
4
A
N4
DC
4
1_555
B
DG
13
A
O6
DG
13
2_765
hydrog
WATSON-CRICK
B
DC
4
A
O2
DC
4
1_555
B
DG
13
A
N2
DG
13
2_765
hydrog
WATSON-CRICK
B
DA
5
A
N1
DA
5
1_555
B
DT
12
A
N3
DT
12
2_765
hydrog
WATSON-CRICK
B
DA
5
A
N6
DA
5
1_555
B
DT
12
A
O4
DT
12
2_765
hydrog
WATSON-CRICK
B
DT
6
A
N3
DT
6
1_555
B
DA
11
A
N1
DA
11
2_765
hydrog
WATSON-CRICK
B
DT
6
A
O4
DT
6
1_555
B
DA
11
A
N6
DA
11
2_765
hydrog
WATSON-CRICK
B
DT
7
A
N3
DT
7
1_555
B
DA
10
A
N1
DA
10
2_765
hydrog
WATSON-CRICK
B
DT
7
A
O4
DT
7
1_555
B
DA
10
A
N6
DA
10
2_765
hydrog
WATSON-CRICK
B
DG
8
A
N1
DG
8
1_555
B
DC
9
A
N3
DC
9
2_765
hydrog
WATSON-CRICK
B
DG
8
A
N2
DG
8
1_555
B
DC
9
A
O2
DC
9
2_765
hydrog
WATSON-CRICK
B
DG
8
A
O6
DG
8
1_555
B
DC
9
A
N4
DC
9
2_765
hydrog
WATSON-CRICK
B
DC
9
A
N3
DC
9
1_555
B
DG
8
A
N1
DG
8
2_765
hydrog
WATSON-CRICK
B
DC
9
A
N4
DC
9
1_555
B
DG
8
A
O6
DG
8
2_765
hydrog
WATSON-CRICK
B
DC
9
A
O2
DC
9
1_555
B
DG
8
A
N2
DG
8
2_765
hydrog
WATSON-CRICK
B
DA
10
A
N1
DA
10
1_555
B
DT
7
A
N3
DT
7
2_765
hydrog
WATSON-CRICK
B
DA
10
A
N6
DA
10
1_555
B
DT
7
A
O4
DT
7
2_765
hydrog
WATSON-CRICK
B
DA
11
A
N1
DA
11
1_555
B
DT
6
A
N3
DT
6
2_765
hydrog
WATSON-CRICK
B
DA
11
A
N6
DA
11
1_555
B
DT
6
A
O4
DT
6
2_765
hydrog
WATSON-CRICK
B
DT
12
A
N3
DT
12
1_555
B
DA
5
A
N1
DA
5
2_765
hydrog
WATSON-CRICK
B
DT
12
A
O4
DT
12
1_555
B
DA
5
A
N6
DA
5
2_765
hydrog
WATSON-CRICK
B
DG
13
A
N1
DG
13
1_555
B
DC
4
A
N3
DC
4
2_765
hydrog
WATSON-CRICK
B
DG
13
A
N2
DG
13
1_555
B
DC
4
A
O2
DC
4
2_765
hydrog
WATSON-CRICK
B
DG
13
A
O6
DG
13
1_555
B
DC
4
A
N4
DC
4
2_765
hydrog
WATSON-CRICK
B
DA
14
A
N1
DA
14
1_555
B
DT
3
A
N3
DT
3
2_765
hydrog
WATSON-CRICK
B
DA
14
A
N6
DA
14
1_555
B
DT
3
A
O4
DT
3
2_765
hydrog
WATSON-CRICK
B
DA
15
A
N1
DA
15
1_555
B
DT
2
A
N3
DT
2
2_765
hydrog
WATSON-CRICK
B
DA
15
A
N6
DA
15
1_555
B
DT
2
A
O4
DT
2
2_765
hydrog
WATSON-CRICK
B
DA
16
A
N1
DA
16
1_555
B
DT
1
A
N3
DT
1
2_765
hydrog
WATSON-CRICK
B
DA
16
A
N6
DA
16
1_555
B
DT
1
A
O4
DT
1
2_765
TRANSFERASE/DNA
LTR, MMLV, integrase, TRANSFERASE-DNA COMPLEX
POL_MLVMO
UNP
2
144
P03355
2FVP
PDB
1
2FVP
144
398
2FVP
24
278
P03355
A
1
1
255
1
16
2FVP
1
16
2FVP
B
2
1
16
3
2
4
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
LEU
87
B
LEU
64
A
CYS
90
B
CYS
67
A
GLN
182
B
GLN
159
A
TRP
185
B
TRP
162
A
PHE
170
B
PHE
147
A
GLU
171
B
GLU
148
A
LEU
98
B
LEU
75
A
LYS
102
B
LYS
79
A
TYR
109
B
TYR
86
A
GLN
113
B
GLN
90
A
ILE
218
B
ILE
195
A
TYR
222
B
TYR
199
A
ASP
225
B
ASP
202
A
ALA
230
B
ALA
207
A
TRP
145
B
TRP
122
A
ASP
150
B
ASP
127
A
GLN
260
B
GLN
237
A
GLN
263
B
GLN
240
A
GLN
265
B
GLN
242
A
TYR
268
B
TYR
245
A
TYR
271
B
TYR
248
A
LYS
274
B
LYS
251
18
P 21 21 2