0.004488
0.002591
0.000000
0.000000
0.005182
0.000000
0.000000
0.000000
0.013286
0.00000
0.00000
0.00000
Bogen, S.L.
Ruan, S.
Liu, R.
Agrawal, S.
Pichardo, J.
Prongay, A.
Baroudy, B.
Saksena, A.
Girijavallabhan, V.
Njoroge, F.G.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
36
90.00
90.00
120.00
222.811
222.811
75.266
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C35 H52 N6 O9
700.822
(2S,8R,9S,15S)-15-CYCLOHEXYL-9,12-BIS(CYCLOPROPYLMETHYL)-8-HYDROXY-20-METHYL-4,7,11,14,17-PENTAOXO-2-PHENYL-18-OXA-3,6,10,12,13,16-HEXAAZAHENICOSAN-1-OIC ACID
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
C
N
75
N
O
N
76
N
O
N
77
N
C
N
78
N
C
N
79
N
C
N
80
N
C
N
81
N
N
N
82
S
C
N
83
N
C
N
84
N
C
N
85
N
C
N
86
N
C
N
87
N
C
N
88
N
C
N
89
N
C
N
90
N
O
N
91
N
N
N
92
N
C
N
93
N
O
N
94
N
C
N
95
N
C
N
96
N
C
N
97
N
C
N
98
N
N
N
99
S
C
N
100
N
C
N
101
N
C
N
102
N
C
N
103
N
C
N
104
N
O
N
105
R
C
N
106
N
O
N
107
N
C
N
108
N
N
N
109
S
C
Y
110
N
C
Y
111
N
C
Y
112
N
C
Y
113
N
C
Y
114
N
C
Y
115
N
C
N
116
N
C
N
117
N
O
N
118
N
O
N
119
N
N
N
120
N
N
N
121
N
C
N
122
N
O
N
123
N
C
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
N
N
177
R
C
N
178
N
C
N
179
N
O
N
180
N
C
N
181
N
S
N
182
N
O
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
N
N
191
S
C
N
192
N
C
N
193
N
O
N
194
N
C
N
195
N
C
N
196
N
C
N
197
N
O
N
198
N
N
N
199
N
O
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
N
N
211
S
C
N
212
N
C
N
213
N
O
N
214
N
C
N
215
N
C
N
216
N
C
N
217
N
O
N
218
N
O
N
219
N
O
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
N
N
230
N
C
N
231
N
C
N
232
N
O
N
233
N
O
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
N
N
240
S
C
N
241
N
C
N
242
N
O
N
243
N
C
Y
244
N
C
Y
245
N
N
Y
246
N
C
Y
247
N
C
Y
248
N
N
N
249
N
O
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
O
N
261
N
H
N
262
N
H
N
263
N
N
N
264
S
C
N
265
N
C
N
266
N
O
N
267
S
C
N
268
N
C
N
269
N
C
N
270
N
C
N
271
N
O
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
N
N
286
S
C
N
287
N
C
N
288
N
O
N
289
N
C
N
290
N
C
N
291
N
C
N
292
N
C
N
293
N
O
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
N
N
308
S
C
N
309
N
C
N
310
N
O
N
311
N
C
N
312
N
C
N
313
N
C
N
314
N
C
N
315
N
N
N
316
N
O
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
N
N
333
S
C
N
334
N
C
N
335
N
O
N
336
N
C
N
337
N
C
N
338
N
S
N
339
N
C
N
340
N
O
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
N
N
353
S
C
N
354
N
C
N
355
N
O
N
356
N
C
Y
357
N
C
Y
358
N
C
Y
359
N
C
Y
360
N
C
Y
361
N
C
Y
362
N
C
N
363
N
O
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
N
N
376
S
C
N
377
N
C
N
378
N
O
N
379
N
C
N
380
N
C
N
381
N
C
N
382
N
O
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
N
N
393
S
C
N
394
N
C
N
395
N
O
N
396
N
C
N
397
N
O
N
398
N
O
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
N
N
407
S
C
N
408
N
C
N
409
N
O
N
410
R
C
N
411
N
O
N
412
N
C
N
413
N
O
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
N
N
424
S
C
N
425
N
C
N
426
N
O
N
427
N
C
Y
428
N
C
Y
429
N
C
Y
430
N
C
Y
431
N
N
Y
432
N
C
Y
433
N
C
Y
434
N
C
Y
435
N
C
Y
436
N
C
N
437
N
O
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
N
N
451
S
C
N
452
N
C
N
453
N
O
N
454
N
C
Y
455
N
C
Y
456
N
C
Y
457
N
C
Y
458
N
C
Y
459
N
C
Y
460
N
C
N
461
N
O
N
462
N
O
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
N
N
475
S
C
N
476
N
C
N
477
N
O
N
478
N
C
N
479
N
C
N
480
N
C
N
481
N
O
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
H
N
487
N
H
N
488
N
H
N
489
N
H
N
490
N
H
N
491
N
H
N
492
N
H
N
493
N
ZN
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
doub
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
doub
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
doub
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
Y
156
N
doub
Y
157
N
sing
Y
158
N
doub
N
159
N
sing
Y
160
N
sing
N
161
N
sing
Y
162
N
sing
N
163
N
sing
Y
164
N
doub
N
165
N
sing
N
166
N
sing
N
167
N
doub
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
doub
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
doub
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
doub
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
doub
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
doub
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
doub
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
doub
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
Y
245
N
sing
Y
246
N
doub
Y
247
N
doub
N
248
N
sing
Y
249
N
sing
N
250
N
sing
Y
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
doub
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
doub
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
doub
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
doub
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
doub
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
Y
353
N
doub
Y
354
N
sing
Y
355
N
sing
N
356
N
sing
Y
357
N
doub
N
358
N
sing
Y
359
N
doub
N
360
N
sing
Y
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
doub
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
doub
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
doub
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
doub
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
Y
422
N
doub
Y
423
N
sing
Y
424
N
sing
N
425
N
sing
Y
426
N
doub
Y
427
N
sing
Y
428
N
sing
N
429
N
sing
Y
430
N
sing
Y
431
N
doub
N
432
N
sing
Y
433
N
doub
N
434
N
sing
Y
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
doub
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
Y
450
N
doub
Y
451
N
sing
Y
452
N
sing
N
453
N
sing
Y
454
N
doub
N
455
N
sing
Y
456
N
doub
N
457
N
sing
Y
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
doub
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
UK
Bioorg.Med.Chem.Lett.
BMCLE8
1127
0960-894X
16
1621
1627
10.1016/j.bmcl.2005.12.013
16387495
Depeptidization efforts on P3-P2 a-ketoamide inhibitors of HCV NS3-4A serine protease: Effect on HCV replicon activity.
2006
US
Cell(Cambridge,Mass.)
CELLB5
0998
0092-8674
87
343
355
10.1016/S0092-8674(00)81351-3
8861917
Crystal Structure of the Hepatitis C Virus NS3 Protease Domain Complexed with a Synthetic NS4a Cofactor Peptide
1996
UK
Bioorg.Med.Chem.Lett.
BMCLE8
1127
0960-894X
15
4515
4519
10.1016/j.bmcl.2005.07.009
16112862
Hepatitis C virus NS3-4A serine protease inhibitors: Use of a P2-P1 cyclopropyl alanine combination to improve potency.
2005
US
J.Med.Chem.
JMCMAR
0151
0022-2623
48
5088
5091
10.1021/jm0489556
16078825
Design and Synthesis of Depeptidized Macrocyclic Inhibitors of Hepatitis C NS3-4A Protease Using Structure-Based Drug Design
2005
GE
Angew.Chem.Int.Ed.Engl.
ACIEAY
0179
0570-0833
44
7024
7028
10.1002/anie.200501553
16211639
Proline-Based Macrocyclic Inhibitors of the Hepatitis C Virus: Stereoselective Synthesis and Biological Activity.
2005
UK
Bioorg.Med.Chem.Lett.
BMCLE8
1127
0960-894X
14
5751
5755
10.1016/j.bmcl.2004.09.058
15501035
Novel 2-oxoimidazolidine-4-carboxylic acid derivatives as Hepatitis C virus NS3-4A serine protease inhibitors: synthesis, activity and X-ray crystal structure of an enzyme inhibitor complex
2004
10.2210/pdb2f9v/pdb
pdb_00002f9v
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
95.0
1
OSMIC GREEN
IMAGE PLATE
2000-02-27
RIGAKU RAXIS IV
OSMIC GREEN
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RUH3R
21290.277
NS3 protease/helicase
protease domain (Residues : 1-181)
2
man
polymer
2394.039
polyprotein
Residues 21-39
2
syn
polymer
ketoamide peptide
65.409
ZINC ION
2
syn
non-polymer
700.822
(2S,8R,9S,15S)-15-CYCLOHEXYL-9,12-BIS(CYCLOPROPYLMETHYL)-8-HYDROXY-20-METHYL-4,7,11,14,17-PENTAOXO-2-PHENYL-18-OXA-3,6,10,12,13,16-HEXAAZAHENICOSAN-1-OIC ACID
1
syn
non-polymer
18.015
water
132
nat
water
no
no
MGASMTGGQQMGAPITAYAQQTRGLLGCIITSLTGRDKNQVEGEVQIVSTATQTFLATCINGVCWTVYHGAGTRTIASPK
GPVIQMYTNVDQDLVGWPAPQGSRSLTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLLSPRPISYLKGSSGGPLLCPAG
HAVGLFRAAVCTRGVAKAVDFIPVENLETTMRSGSHHHHHH
MGASMTGGQQMGAPITAYAQQTRGLLGCIITSLTGRDKNQVEGEVQIVSTATQTFLATCINGVCWTVYHGAGTRTIASPK
GPVIQMYTNVDQDLVGWPAPQGSRSLTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLLSPRPISYLKGSSGGPLLCPAG
HAVGLFRAAVCTRGVAKAVDFIPVENLETTMRSGSHHHHHH
A,C
polypeptide(L)
no
no
KKGSVVIVGRIVLSGKPAIIPKK
KKGSVVIVGRIVLSGKPAIIPKK
B,D
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Hepacivirus
H
Escherichia
sample
NS3 protease domain ( residues 1027-1207 of the polyprotein).
11103
Hepatitis C virus
562
Escherichia coli
JM109(DE3)
plasmid
NS3(181)His6/pET22b
1
3.82
67.83
5.70
12-15 mG/mL Protein in 15 mM MES, pH 6.5 - 1.0 M NaCl equivolume mixture with (0.85-1.05M) NaCl- 0.1M MES-0.1 M Na/KPO4, pH5.5-5.8 - 5mM BME, equilibrated with 1.35-1.55M NaCl-0.1M MES-0.1M Na/KPO4, pH 5.6-5.8 - 5 mM BME, VAPOR DIFFUSION, HANGING DROP, temperature 285K, pH 5.70
285
database_2
pdbx_struct_conn_angle
struct_conn
struct_conn_type
struct_ref_seq_dif
struct_site
chem_comp_atom
chem_comp_bond
entity
pdbx_entity_src_syn
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
Data collection
Source and taxonomy
Structure summary
1
0
2007-01-09
1
1
2008-05-01
1
2
2011-07-13
1
3
2021-10-20
1
4
2024-03-13
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.conn_type_id
_struct_conn.id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn_type.id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_entity.details
Same protein without inhibitor
A different strain of the same protein
Same protein with a different inhibitor
Same protein with a different inhibitor
Same protein with a different inhibitor
Same protein with a different inhibitor
RCSB
Y
RCSB
2005-12-06
REL
REL
ZN
ZINC ION
BN6
(2S,8R,9S,15S)-15-CYCLOHEXYL-9,12-BIS(CYCLOPROPYLMETHYL)-8-HYDROXY-20-METHYL-4,7,11,14,17-PENTAOXO-2-PHENYL-18-OXA-3,6,10,12,13,16-HEXAAZAHENICOSAN-1-OIC ACID
HOH
water
Solid-phase peptide synthesis of the NS4a residues 21-39 peptide with N-terminal KK and C-terminal KK extensions.
sample
ZN
901
3
ZN
ZN
901
A
BN6
999
4
BN6
BN6
999
A
ZN
902
3
ZN
ZN
902
C
HOH
2
5
HOH
HOH
1000
A
HOH
3
5
HOH
HOH
1001
A
HOH
4
5
HOH
HOH
1002
A
HOH
6
5
HOH
HOH
1003
A
HOH
10
5
HOH
HOH
1004
A
HOH
12
5
HOH
HOH
1005
A
HOH
14
5
HOH
HOH
1006
A
HOH
16
5
HOH
HOH
1007
A
HOH
17
5
HOH
HOH
1008
A
HOH
18
5
HOH
HOH
1009
A
HOH
20
5
HOH
HOH
1010
A
HOH
23
5
HOH
HOH
1011
A
HOH
24
5
HOH
HOH
1012
A
HOH
28
5
HOH
HOH
1013
A
HOH
30
5
HOH
HOH
1014
A
HOH
31
5
HOH
HOH
1015
A
HOH
33
5
HOH
HOH
1016
A
HOH
35
5
HOH
HOH
1017
A
HOH
36
5
HOH
HOH
1018
A
HOH
37
5
HOH
HOH
1019
A
HOH
38
5
HOH
HOH
1020
A
HOH
39
5
HOH
HOH
1021
A
HOH
40
5
HOH
HOH
1022
A
HOH
41
5
HOH
HOH
1023
A
HOH
42
5
HOH
HOH
1024
A
HOH
43
5
HOH
HOH
1025
A
HOH
50
5
HOH
HOH
1026
A
HOH
51
5
HOH
HOH
1027
A
HOH
55
5
HOH
HOH
1028
A
HOH
56
5
HOH
HOH
1029
A
HOH
58
5
HOH
HOH
1030
A
HOH
61
5
HOH
HOH
1031
A
HOH
64
5
HOH
HOH
1032
A
HOH
66
5
HOH
HOH
1033
A
HOH
68
5
HOH
HOH
1034
A
HOH
69
5
HOH
HOH
1035
A
HOH
70
5
HOH
HOH
1036
A
HOH
73
5
HOH
HOH
1037
A
HOH
74
5
HOH
HOH
1038
A
HOH
76
5
HOH
HOH
1039
A
HOH
77
5
HOH
HOH
1040
A
HOH
81
5
HOH
HOH
1041
A
HOH
82
5
HOH
HOH
1042
A
HOH
88
5
HOH
HOH
1043
A
HOH
93
5
HOH
HOH
1044
A
HOH
94
5
HOH
HOH
1045
A
HOH
96
5
HOH
HOH
1046
A
HOH
98
5
HOH
HOH
1047
A
HOH
99
5
HOH
HOH
1048
A
HOH
101
5
HOH
HOH
1049
A
HOH
103
5
HOH
HOH
1050
A
HOH
105
5
HOH
HOH
1051
A
HOH
106
5
HOH
HOH
1052
A
HOH
109
5
HOH
HOH
1053
A
HOH
114
5
HOH
HOH
1054
A
HOH
115
5
HOH
HOH
1055
A
HOH
117
5
HOH
HOH
1056
A
HOH
121
5
HOH
HOH
1057
A
HOH
122
5
HOH
HOH
1058
A
HOH
123
5
HOH
HOH
1059
A
HOH
124
5
HOH
HOH
1060
A
HOH
126
5
HOH
HOH
1061
A
HOH
128
5
HOH
HOH
1062
A
HOH
129
5
HOH
HOH
1063
A
HOH
131
5
HOH
HOH
1064
A
HOH
132
5
HOH
HOH
1065
A
HOH
8
5
HOH
HOH
42
B
HOH
19
5
HOH
HOH
43
B
HOH
21
5
HOH
HOH
44
B
HOH
22
5
HOH
HOH
45
B
HOH
83
5
HOH
HOH
46
B
HOH
95
5
HOH
HOH
47
B
HOH
104
5
HOH
HOH
48
B
HOH
125
5
HOH
HOH
49
B
HOH
5
5
HOH
HOH
903
C
HOH
7
5
HOH
HOH
904
C
HOH
9
5
HOH
HOH
905
C
HOH
11
5
HOH
HOH
906
C
HOH
13
5
HOH
HOH
907
C
HOH
25
5
HOH
HOH
908
C
HOH
26
5
HOH
HOH
909
C
HOH
27
5
HOH
HOH
910
C
HOH
29
5
HOH
HOH
911
C
HOH
32
5
HOH
HOH
912
C
HOH
34
5
HOH
HOH
913
C
HOH
44
5
HOH
HOH
914
C
HOH
45
5
HOH
HOH
915
C
HOH
46
5
HOH
HOH
916
C
HOH
48
5
HOH
HOH
917
C
HOH
49
5
HOH
HOH
918
C
HOH
52
5
HOH
HOH
919
C
HOH
53
5
HOH
HOH
920
C
HOH
54
5
HOH
HOH
921
C
HOH
57
5
HOH
HOH
922
C
HOH
59
5
HOH
HOH
923
C
HOH
60
5
HOH
HOH
924
C
HOH
62
5
HOH
HOH
925
C
HOH
63
5
HOH
HOH
926
C
HOH
65
5
HOH
HOH
927
C
HOH
71
5
HOH
HOH
928
C
HOH
75
5
HOH
HOH
929
C
HOH
78
5
HOH
HOH
930
C
HOH
79
5
HOH
HOH
931
C
HOH
84
5
HOH
HOH
932
C
HOH
85
5
HOH
HOH
933
C
HOH
86
5
HOH
HOH
934
C
HOH
87
5
HOH
HOH
935
C
HOH
89
5
HOH
HOH
936
C
HOH
90
5
HOH
HOH
937
C
HOH
92
5
HOH
HOH
938
C
HOH
100
5
HOH
HOH
939
C
HOH
102
5
HOH
HOH
940
C
HOH
107
5
HOH
HOH
941
C
HOH
108
5
HOH
HOH
942
C
HOH
110
5
HOH
HOH
943
C
HOH
111
5
HOH
HOH
944
C
HOH
112
5
HOH
HOH
945
C
HOH
113
5
HOH
HOH
946
C
HOH
116
5
HOH
HOH
947
C
HOH
118
5
HOH
HOH
948
C
HOH
119
5
HOH
HOH
949
C
HOH
120
5
HOH
HOH
950
C
HOH
127
5
HOH
HOH
951
C
HOH
130
5
HOH
HOH
952
C
HOH
1
5
HOH
HOH
1
D
HOH
15
5
HOH
HOH
15
D
HOH
47
5
HOH
HOH
47
D
HOH
67
5
HOH
HOH
67
D
HOH
72
5
HOH
HOH
72
D
HOH
80
5
HOH
HOH
80
D
HOH
91
5
HOH
HOH
91
D
HOH
97
5
HOH
HOH
97
D
n
1
-11
A
n
2
-10
A
n
3
-9
A
n
4
-8
A
n
5
-7
A
n
6
-6
A
n
7
-5
A
n
8
-4
A
n
9
-3
A
n
10
-2
A
MET
-1
n
11
MET
-1
A
GLY
0
n
12
GLY
0
A
ALA
1
n
13
ALA
1
A
PRO
2
n
14
PRO
2
A
ILE
3
n
15
ILE
3
A
THR
4
n
16
THR
4
A
ALA
5
n
17
ALA
5
A
TYR
6
n
18
TYR
6
A
ALA
7
n
19
ALA
7
A
GLN
8
n
20
GLN
8
A
GLN
9
n
21
GLN
9
A
THR
10
n
22
THR
10
A
ARG
11
n
23
ARG
11
A
GLY
12
n
24
GLY
12
A
LEU
13
n
25
LEU
13
A
LEU
14
n
26
LEU
14
A
GLY
15
n
27
GLY
15
A
CYS
16
n
28
CYS
16
A
ILE
17
n
29
ILE
17
A
ILE
18
n
30
ILE
18
A
THR
19
n
31
THR
19
A
SER
20
n
32
SER
20
A
LEU
21
n
33
LEU
21
A
THR
22
n
34
THR
22
A
GLY
23
n
35
GLY
23
A
ARG
24
n
36
ARG
24
A
ASP
25
n
37
ASP
25
A
LYS
26
n
38
LYS
26
A
ASN
27
n
39
ASN
27
A
GLN
28
n
40
GLN
28
A
VAL
29
n
41
VAL
29
A
GLU
30
n
42
GLU
30
A
GLY
31
n
43
GLY
31
A
GLU
32
n
44
GLU
32
A
VAL
33
n
45
VAL
33
A
GLN
34
n
46
GLN
34
A
ILE
35
n
47
ILE
35
A
VAL
36
n
48
VAL
36
A
SER
37
n
49
SER
37
A
THR
38
n
50
THR
38
A
ALA
39
n
51
ALA
39
A
THR
40
n
52
THR
40
A
GLN
41
n
53
GLN
41
A
THR
42
n
54
THR
42
A
PHE
43
n
55
PHE
43
A
LEU
44
n
56
LEU
44
A
ALA
45
n
57
ALA
45
A
THR
46
n
58
THR
46
A
CYS
47
n
59
CYS
47
A
ILE
48
n
60
ILE
48
A
ASN
49
n
61
ASN
49
A
GLY
50
n
62
GLY
50
A
VAL
51
n
63
VAL
51
A
CYS
52
n
64
CYS
52
A
TRP
53
n
65
TRP
53
A
THR
54
n
66
THR
54
A
VAL
55
n
67
VAL
55
A
TYR
56
n
68
TYR
56
A
HIS
57
n
69
HIS
57
A
GLY
58
n
70
GLY
58
A
ALA
59
n
71
ALA
59
A
GLY
60
n
72
GLY
60
A
THR
61
n
73
THR
61
A
ARG
62
n
74
ARG
62
A
THR
63
n
75
THR
63
A
ILE
64
n
76
ILE
64
A
ALA
65
n
77
ALA
65
A
SER
66
n
78
SER
66
A
PRO
67
n
79
PRO
67
A
LYS
68
n
80
LYS
68
A
GLY
69
n
81
GLY
69
A
PRO
70
n
82
PRO
70
A
VAL
71
n
83
VAL
71
A
ILE
72
n
84
ILE
72
A
GLN
73
n
85
GLN
73
A
MET
74
n
86
MET
74
A
TYR
75
n
87
TYR
75
A
THR
76
n
88
THR
76
A
ASN
77
n
89
ASN
77
A
VAL
78
n
90
VAL
78
A
ASP
79
n
91
ASP
79
A
GLN
80
n
92
GLN
80
A
ASP
81
n
93
ASP
81
A
LEU
82
n
94
LEU
82
A
VAL
83
n
95
VAL
83
A
GLY
84
n
96
GLY
84
A
TRP
85
n
97
TRP
85
A
PRO
86
n
98
PRO
86
A
ALA
87
n
99
ALA
87
A
PRO
88
n
100
PRO
88
A
GLN
89
n
101
GLN
89
A
GLY
90
n
102
GLY
90
A
SER
91
n
103
SER
91
A
ARG
92
n
104
ARG
92
A
SER
93
n
105
SER
93
A
LEU
94
n
106
LEU
94
A
THR
95
n
107
THR
95
A
PRO
96
n
108
PRO
96
A
CYS
97
n
109
CYS
97
A
THR
98
n
110
THR
98
A
CYS
99
n
111
CYS
99
A
GLY
100
n
112
GLY
100
A
SER
101
n
113
SER
101
A
SER
102
n
114
SER
102
A
ASP
103
n
115
ASP
103
A
LEU
104
n
116
LEU
104
A
TYR
105
n
117
TYR
105
A
LEU
106
n
118
LEU
106
A
VAL
107
n
119
VAL
107
A
THR
108
n
120
THR
108
A
ARG
109
n
121
ARG
109
A
HIS
110
n
122
HIS
110
A
ALA
111
n
123
ALA
111
A
ASP
112
n
124
ASP
112
A
VAL
113
n
125
VAL
113
A
ILE
114
n
126
ILE
114
A
PRO
115
n
127
PRO
115
A
VAL
116
n
128
VAL
116
A
ARG
117
n
129
ARG
117
A
ARG
118
n
130
ARG
118
A
ARG
119
n
131
ARG
119
A
GLY
120
n
132
GLY
120
A
ASP
121
n
133
ASP
121
A
SER
122
n
134
SER
122
A
ARG
123
n
135
ARG
123
A
GLY
124
n
136
GLY
124
A
SER
125
n
137
SER
125
A
LEU
126
n
138
LEU
126
A
LEU
127
n
139
LEU
127
A
SER
128
n
140
SER
128
A
PRO
129
n
141
PRO
129
A
ARG
130
n
142
ARG
130
A
PRO
131
n
143
PRO
131
A
ILE
132
n
144
ILE
132
A
SER
133
n
145
SER
133
A
TYR
134
n
146
TYR
134
A
LEU
135
n
147
LEU
135
A
LYS
136
n
148
LYS
136
A
GLY
137
n
149
GLY
137
A
SER
138
n
150
SER
138
A
SER
139
n
151
SER
139
A
GLY
140
n
152
GLY
140
A
GLY
141
n
153
GLY
141
A
PRO
142
n
154
PRO
142
A
LEU
143
n
155
LEU
143
A
LEU
144
n
156
LEU
144
A
CYS
145
n
157
CYS
145
A
PRO
146
n
158
PRO
146
A
ALA
147
n
159
ALA
147
A
GLY
148
n
160
GLY
148
A
HIS
149
n
161
HIS
149
A
ALA
150
n
162
ALA
150
A
VAL
151
n
163
VAL
151
A
GLY
152
n
164
GLY
152
A
LEU
153
n
165
LEU
153
A
PHE
154
n
166
PHE
154
A
ARG
155
n
167
ARG
155
A
ALA
156
n
168
ALA
156
A
ALA
157
n
169
ALA
157
A
VAL
158
n
170
VAL
158
A
CYS
159
n
171
CYS
159
A
THR
160
n
172
THR
160
A
ARG
161
n
173
ARG
161
A
GLY
162
n
174
GLY
162
A
VAL
163
n
175
VAL
163
A
ALA
164
n
176
ALA
164
A
LYS
165
n
177
LYS
165
A
ALA
166
n
178
ALA
166
A
VAL
167
n
179
VAL
167
A
ASP
168
n
180
ASP
168
A
PHE
169
n
181
PHE
169
A
ILE
170
n
182
ILE
170
A
PRO
171
n
183
PRO
171
A
VAL
172
n
184
VAL
172
A
GLU
173
n
185
GLU
173
A
ASN
174
n
186
ASN
174
A
LEU
175
n
187
LEU
175
A
GLU
176
n
188
GLU
176
A
THR
177
n
189
THR
177
A
THR
178
n
190
THR
178
A
MET
179
n
191
MET
179
A
ARG
180
n
192
ARG
180
A
SER
181
n
193
SER
181
A
n
194
182
A
n
195
183
A
n
196
184
A
n
197
185
A
n
198
186
A
n
199
187
A
n
200
188
A
n
201
189
A
n
1
19
B
LYS
20
n
2
LYS
20
B
GLY
21
n
3
GLY
21
B
SER
22
n
4
SER
22
B
VAL
23
n
5
VAL
23
B
VAL
24
n
6
VAL
24
B
ILE
25
n
7
ILE
25
B
VAL
26
n
8
VAL
26
B
GLY
27
n
9
GLY
27
B
ARG
28
n
10
ARG
28
B
ILE
29
n
11
ILE
29
B
VAL
30
n
12
VAL
30
B
LEU
31
n
13
LEU
31
B
SER
32
n
14
SER
32
B
GLY
33
n
15
GLY
33
B
LYS
34
n
16
LYS
34
B
PRO
35
n
17
PRO
35
B
ALA
36
n
18
ALA
36
B
ILE
37
n
19
ILE
37
B
ILE
38
n
20
ILE
38
B
PRO
39
n
21
PRO
39
B
LYS
40
n
22
LYS
40
B
LYS
41
n
23
LYS
41
B
n
1
-11
C
n
2
-10
C
n
3
-9
C
n
4
-8
C
n
5
-7
C
n
6
-6
C
n
7
-5
C
n
8
-4
C
n
9
-3
C
n
10
-2
C
n
11
-1
C
n
12
0
C
n
13
1
C
n
14
2
C
n
15
3
C
n
16
4
C
n
17
5
C
n
18
6
C
n
19
7
C
n
20
8
C
n
21
9
C
n
22
10
C
n
23
11
C
n
24
12
C
n
25
13
C
n
26
14
C
n
27
15
C
n
28
16
C
n
29
17
C
n
30
18
C
n
31
19
C
n
32
20
C
n
33
21
C
n
34
22
C
n
35
23
C
n
36
24
C
n
37
25
C
n
38
26
C
n
39
27
C
GLN
28
n
40
GLN
28
C
VAL
29
n
41
VAL
29
C
GLU
30
n
42
GLU
30
C
GLY
31
n
43
GLY
31
C
GLU
32
n
44
GLU
32
C
VAL
33
n
45
VAL
33
C
GLN
34
n
46
GLN
34
C
ILE
35
n
47
ILE
35
C
VAL
36
n
48
VAL
36
C
SER
37
n
49
SER
37
C
THR
38
n
50
THR
38
C
ALA
39
n
51
ALA
39
C
THR
40
n
52
THR
40
C
GLN
41
n
53
GLN
41
C
THR
42
n
54
THR
42
C
PHE
43
n
55
PHE
43
C
LEU
44
n
56
LEU
44
C
ALA
45
n
57
ALA
45
C
THR
46
n
58
THR
46
C
CYS
47
n
59
CYS
47
C
ILE
48
n
60
ILE
48
C
ASN
49
n
61
ASN
49
C
GLY
50
n
62
GLY
50
C
VAL
51
n
63
VAL
51
C
CYS
52
n
64
CYS
52
C
TRP
53
n
65
TRP
53
C
THR
54
n
66
THR
54
C
VAL
55
n
67
VAL
55
C
TYR
56
n
68
TYR
56
C
HIS
57
n
69
HIS
57
C
GLY
58
n
70
GLY
58
C
ALA
59
n
71
ALA
59
C
GLY
60
n
72
GLY
60
C
THR
61
n
73
THR
61
C
ARG
62
n
74
ARG
62
C
THR
63
n
75
THR
63
C
ILE
64
n
76
ILE
64
C
ALA
65
n
77
ALA
65
C
SER
66
n
78
SER
66
C
PRO
67
n
79
PRO
67
C
LYS
68
n
80
LYS
68
C
GLY
69
n
81
GLY
69
C
PRO
70
n
82
PRO
70
C
VAL
71
n
83
VAL
71
C
ILE
72
n
84
ILE
72
C
GLN
73
n
85
GLN
73
C
MET
74
n
86
MET
74
C
TYR
75
n
87
TYR
75
C
THR
76
n
88
THR
76
C
ASN
77
n
89
ASN
77
C
VAL
78
n
90
VAL
78
C
ASP
79
n
91
ASP
79
C
GLN
80
n
92
GLN
80
C
ASP
81
n
93
ASP
81
C
LEU
82
n
94
LEU
82
C
VAL
83
n
95
VAL
83
C
GLY
84
n
96
GLY
84
C
TRP
85
n
97
TRP
85
C
PRO
86
n
98
PRO
86
C
ALA
87
n
99
ALA
87
C
PRO
88
n
100
PRO
88
C
GLN
89
n
101
GLN
89
C
GLY
90
n
102
GLY
90
C
SER
91
n
103
SER
91
C
ARG
92
n
104
ARG
92
C
SER
93
n
105
SER
93
C
LEU
94
n
106
LEU
94
C
THR
95
n
107
THR
95
C
PRO
96
n
108
PRO
96
C
CYS
97
n
109
CYS
97
C
THR
98
n
110
THR
98
C
CYS
99
n
111
CYS
99
C
GLY
100
n
112
GLY
100
C
SER
101
n
113
SER
101
C
SER
102
n
114
SER
102
C
ASP
103
n
115
ASP
103
C
LEU
104
n
116
LEU
104
C
TYR
105
n
117
TYR
105
C
LEU
106
n
118
LEU
106
C
VAL
107
n
119
VAL
107
C
THR
108
n
120
THR
108
C
ARG
109
n
121
ARG
109
C
HIS
110
n
122
HIS
110
C
ALA
111
n
123
ALA
111
C
ASP
112
n
124
ASP
112
C
VAL
113
n
125
VAL
113
C
ILE
114
n
126
ILE
114
C
PRO
115
n
127
PRO
115
C
VAL
116
n
128
VAL
116
C
ARG
117
n
129
ARG
117
C
ARG
118
n
130
ARG
118
C
ARG
119
n
131
ARG
119
C
GLY
120
n
132
GLY
120
C
ASP
121
n
133
ASP
121
C
SER
122
n
134
SER
122
C
ARG
123
n
135
ARG
123
C
GLY
124
n
136
GLY
124
C
SER
125
n
137
SER
125
C
LEU
126
n
138
LEU
126
C
LEU
127
n
139
LEU
127
C
SER
128
n
140
SER
128
C
PRO
129
n
141
PRO
129
C
ARG
130
n
142
ARG
130
C
PRO
131
n
143
PRO
131
C
ILE
132
n
144
ILE
132
C
SER
133
n
145
SER
133
C
TYR
134
n
146
TYR
134
C
LEU
135
n
147
LEU
135
C
LYS
136
n
148
LYS
136
C
GLY
137
n
149
GLY
137
C
SER
138
n
150
SER
138
C
SER
139
n
151
SER
139
C
GLY
140
n
152
GLY
140
C
GLY
141
n
153
GLY
141
C
PRO
142
n
154
PRO
142
C
LEU
143
n
155
LEU
143
C
LEU
144
n
156
LEU
144
C
CYS
145
n
157
CYS
145
C
PRO
146
n
158
PRO
146
C
ALA
147
n
159
ALA
147
C
GLY
148
n
160
GLY
148
C
HIS
149
n
161
HIS
149
C
ALA
150
n
162
ALA
150
C
VAL
151
n
163
VAL
151
C
GLY
152
n
164
GLY
152
C
LEU
153
n
165
LEU
153
C
PHE
154
n
166
PHE
154
C
ARG
155
n
167
ARG
155
C
ALA
156
n
168
ALA
156
C
ALA
157
n
169
ALA
157
C
VAL
158
n
170
VAL
158
C
CYS
159
n
171
CYS
159
C
THR
160
n
172
THR
160
C
ARG
161
n
173
ARG
161
C
GLY
162
n
174
GLY
162
C
VAL
163
n
175
VAL
163
C
ALA
164
n
176
ALA
164
C
LYS
165
n
177
LYS
165
C
ALA
166
n
178
ALA
166
C
VAL
167
n
179
VAL
167
C
ASP
168
n
180
ASP
168
C
PHE
169
n
181
PHE
169
C
ILE
170
n
182
ILE
170
C
PRO
171
n
183
PRO
171
C
VAL
172
n
184
VAL
172
C
GLU
173
n
185
GLU
173
C
ASN
174
n
186
ASN
174
C
LEU
175
n
187
LEU
175
C
GLU
176
n
188
GLU
176
C
THR
177
n
189
THR
177
C
THR
178
n
190
THR
178
C
MET
179
n
191
MET
179
C
n
192
180
C
n
193
181
C
n
194
182
C
n
195
183
C
n
196
184
C
n
197
185
C
n
198
186
C
n
199
187
C
n
200
188
C
n
201
189
C
n
1
19
D
n
2
20
D
GLY
21
n
3
GLY
21
D
SER
22
n
4
SER
22
D
VAL
23
n
5
VAL
23
D
VAL
24
n
6
VAL
24
D
ILE
25
n
7
ILE
25
D
VAL
26
n
8
VAL
26
D
GLY
27
n
9
GLY
27
D
ARG
28
n
10
ARG
28
D
ILE
29
n
11
ILE
29
D
VAL
30
n
12
VAL
30
D
LEU
31
n
13
LEU
31
D
SER
32
n
14
SER
32
D
GLY
33
n
15
GLY
33
D
LYS
34
n
16
LYS
34
D
PRO
35
n
17
PRO
35
D
ALA
36
n
18
ALA
36
D
n
19
37
D
n
20
38
D
n
21
39
D
n
22
40
D
n
23
41
D
author_and_software_defined_assembly
PISA
4
tetrameric
7670
-129
15590
A
CYS
97
A
SG
CYS
109
1_555
A
ZN
901
E
ZN
ZN
1_555
A
CYS
99
A
SG
CYS
111
1_555
91.8
A
CYS
97
A
SG
CYS
109
1_555
A
ZN
901
E
ZN
ZN
1_555
A
CYS
145
A
SG
CYS
157
1_555
91.0
A
CYS
99
A
SG
CYS
111
1_555
A
ZN
901
E
ZN
ZN
1_555
A
CYS
145
A
SG
CYS
157
1_555
108.9
A
CYS
97
A
SG
CYS
109
1_555
A
ZN
901
E
ZN
ZN
1_555
A
HOH
1003
H
O
HOH
1_555
102.6
A
CYS
99
A
SG
CYS
111
1_555
A
ZN
901
E
ZN
ZN
1_555
A
HOH
1003
H
O
HOH
1_555
121.7
A
CYS
145
A
SG
CYS
157
1_555
A
ZN
901
E
ZN
ZN
1_555
A
HOH
1003
H
O
HOH
1_555
126.6
C
CYS
97
C
SG
CYS
109
1_555
C
ZN
902
G
ZN
ZN
1_555
C
CYS
99
C
SG
CYS
111
1_555
98.4
C
CYS
97
C
SG
CYS
109
1_555
C
ZN
902
G
ZN
ZN
1_555
C
CYS
145
C
SG
CYS
157
1_555
91.8
C
CYS
99
C
SG
CYS
111
1_555
C
ZN
902
G
ZN
ZN
1_555
C
CYS
145
C
SG
CYS
157
1_555
116.0
C
CYS
97
C
SG
CYS
109
1_555
C
ZN
902
G
ZN
ZN
1_555
C
HOH
903
J
O
HOH
1_555
106.5
C
CYS
99
C
SG
CYS
111
1_555
C
ZN
902
G
ZN
ZN
1_555
C
HOH
903
J
O
HOH
1_555
111.7
C
CYS
145
C
SG
CYS
157
1_555
C
ZN
902
G
ZN
ZN
1_555
C
HOH
903
J
O
HOH
1_555
125.3
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
TYR
6
A
N
TYR
18
B
O
VAL
30
B
O
VAL
12
B
O
VAL
24
B
O
VAL
6
A
N
SER
37
A
N
SER
49
A
N
VAL
36
A
N
VAL
48
A
O
PHE
43
A
O
PHE
55
A
N
THR
46
A
N
THR
58
A
O
TRP
53
A
O
TRP
65
A
N
CYS
52
A
N
CYS
64
A
O
TRP
85
A
O
TRP
97
A
O
LEU
82
A
O
LEU
94
A
N
ASN
77
A
N
ASN
89
A
N
ILE
64
A
N
ILE
76
A
O
VAL
71
A
O
VAL
83
A
N
LEU
106
A
N
LEU
118
A
O
ILE
114
A
O
ILE
126
A
N
ARG
117
A
N
ARG
129
A
O
SER
125
A
O
SER
137
A
N
ARG
130
A
N
ARG
142
A
O
ALA
164
A
O
ALA
176
A
O
ASP
168
A
O
ASP
180
A
N
ALA
156
A
N
ALA
168
A
O
VAL
151
A
O
VAL
163
A
N
LEU
143
A
N
LEU
155
A
O
LEU
144
A
O
LEU
156
A
N
TYR
105
A
N
TYR
117
B
N
ALA
36
B
N
ALA
18
D
O
VAL
30
D
O
VAL
12
D
O
VAL
23
D
O
VAL
5
C
N
THR
63
C
N
THR
75
B
N
ALA
36
B
N
ALA
18
D
O
VAL
30
D
O
VAL
12
D
O
VAL
26
D
O
VAL
8
C
N
ILE
35
C
N
ILE
47
C
N
VAL
36
C
N
VAL
48
C
O
PHE
43
C
O
PHE
55
C
N
THR
46
C
N
THR
58
C
O
TRP
53
C
O
TRP
65
C
N
CYS
52
C
N
CYS
64
C
O
TRP
85
C
O
TRP
97
C
O
LEU
82
C
O
LEU
94
C
N
ASN
77
C
N
ASN
89
C
N
LEU
106
C
N
LEU
118
C
O
ILE
114
C
O
ILE
126
C
N
ARG
117
C
N
ARG
129
C
O
SER
125
C
O
SER
137
C
N
ARG
130
C
N
ARG
142
C
O
ALA
164
C
O
ALA
176
C
O
ASP
168
C
O
ASP
180
C
N
ALA
156
C
N
ALA
168
C
O
VAL
151
C
O
VAL
163
C
N
LEU
143
C
N
LEU
155
C
O
LEU
144
C
O
LEU
156
C
N
TYR
105
C
N
TYR
117
1
B
O
LYS
41
B
O
LYS
23
1
Y
1
A
MET
-11
A
MET
1
1
Y
1
A
GLY
-10
A
GLY
2
1
Y
1
A
ALA
-9
A
ALA
3
1
Y
1
A
SER
-8
A
SER
4
1
Y
1
A
MET
-7
A
MET
5
1
Y
1
A
THR
-6
A
THR
6
1
Y
1
A
GLY
-5
A
GLY
7
1
Y
1
A
GLY
-4
A
GLY
8
1
Y
1
A
GLN
-3
A
GLN
9
1
Y
1
A
GLN
-2
A
GLN
10
1
Y
1
A
GLY
182
A
GLY
194
1
Y
1
A
SER
183
A
SER
195
1
Y
1
A
HIS
184
A
HIS
196
1
Y
1
A
HIS
185
A
HIS
197
1
Y
1
A
HIS
186
A
HIS
198
1
Y
1
A
HIS
187
A
HIS
199
1
Y
1
A
HIS
188
A
HIS
200
1
Y
1
A
HIS
189
A
HIS
201
1
Y
1
B
LYS
19
B
LYS
1
1
Y
1
C
MET
-11
C
MET
1
1
Y
1
C
GLY
-10
C
GLY
2
1
Y
1
C
ALA
-9
C
ALA
3
1
Y
1
C
SER
-8
C
SER
4
1
Y
1
C
MET
-7
C
MET
5
1
Y
1
C
THR
-6
C
THR
6
1
Y
1
C
GLY
-5
C
GLY
7
1
Y
1
C
GLY
-4
C
GLY
8
1
Y
1
C
GLN
-3
C
GLN
9
1
Y
1
C
GLN
-2
C
GLN
10
1
Y
1
C
MET
-1
C
MET
11
1
Y
1
C
GLY
0
C
GLY
12
1
Y
1
C
ALA
1
C
ALA
13
1
Y
1
C
PRO
2
C
PRO
14
1
Y
1
C
ILE
3
C
ILE
15
1
Y
1
C
THR
4
C
THR
16
1
Y
1
C
ALA
5
C
ALA
17
1
Y
1
C
TYR
6
C
TYR
18
1
Y
1
C
ALA
7
C
ALA
19
1
Y
1
C
GLN
8
C
GLN
20
1
Y
1
C
GLN
9
C
GLN
21
1
Y
1
C
THR
10
C
THR
22
1
Y
1
C
ARG
11
C
ARG
23
1
Y
1
C
GLY
12
C
GLY
24
1
Y
1
C
LEU
13
C
LEU
25
1
Y
1
C
LEU
14
C
LEU
26
1
Y
1
C
GLY
15
C
GLY
27
1
Y
1
C
CYS
16
C
CYS
28
1
Y
1
C
ILE
17
C
ILE
29
1
Y
1
C
ILE
18
C
ILE
30
1
Y
1
C
THR
19
C
THR
31
1
Y
1
C
SER
20
C
SER
32
1
Y
1
C
LEU
21
C
LEU
33
1
Y
1
C
THR
22
C
THR
34
1
Y
1
C
GLY
23
C
GLY
35
1
Y
1
C
ARG
24
C
ARG
36
1
Y
1
C
ASP
25
C
ASP
37
1
Y
1
C
LYS
26
C
LYS
38
1
Y
1
C
ASN
27
C
ASN
39
1
Y
1
C
ARG
180
C
ARG
192
1
Y
1
C
SER
181
C
SER
193
1
Y
1
C
GLY
182
C
GLY
194
1
Y
1
C
SER
183
C
SER
195
1
Y
1
C
HIS
184
C
HIS
196
1
Y
1
C
HIS
185
C
HIS
197
1
Y
1
C
HIS
186
C
HIS
198
1
Y
1
C
HIS
187
C
HIS
199
1
Y
1
C
HIS
188
C
HIS
200
1
Y
1
C
HIS
189
C
HIS
201
1
Y
1
D
LYS
19
D
LYS
1
1
Y
1
D
LYS
20
D
LYS
2
1
Y
1
D
ILE
37
D
ILE
19
1
Y
1
D
ILE
38
D
ILE
20
1
Y
1
D
PRO
39
D
PRO
21
1
Y
1
D
LYS
40
D
LYS
22
1
Y
1
D
LYS
41
D
LYS
23
1
Y
1
A
PHE
43
-157.47
-159.73
1
A
ASN
77
-152.56
79.32
1
A
ASP
81
70.17
39.43
1
A
THR
98
-140.65
29.17
1
A
PRO
129
-46.91
159.03
1
A
PRO
146
-43.63
-16.69
1
B
PRO
35
-37.87
134.76
1
C
PHE
43
-159.27
-158.49
1
C
ASN
77
-102.72
76.89
1
C
ASP
121
-28.68
-46.82
1
C
SER
122
-140.97
29.26
1
C
PRO
146
-55.40
-3.09
0.264
0.189
0.189
2.60
2.690
1983
21990
19887
9.4
93.8
RANDOM
1
1.000
FOURIER SYNTHESIS
Engh & Huber
2.60
2.690
132
2928
52
0
2744
0.008
1.85
1.22
0.3453
0.3094
2.71
184
1906
8
7.8
80.2
37.31
2.600
2.690
2F9V
21990
1.970
0.088
1
16.8000
3.700
99.7
2.60
2.69
0.551
99.1
data collection
HKL-2000
data scaling
SCALEPACK
model building
X-PLOR
refinement
X-PLOR
98.1
data reduction
HKL-2000
phasing
X-PLOR
HCV NS3 protease domain with NS4a peptide and a ketoamide inhibitor with P1 and P2 cyclopropylalannines
1
N
N
2
N
N
1
N
N
2
N
N
3
N
N
4
N
N
3
N
N
5
N
N
5
N
N
5
N
N
5
N
N
The NS3 protease domain, residues 1-181 of NS3, exists in a complex with an NS4a peptide and an inhibitor. There is a dimer of the NS3 domain-NS4a peptide complex, but only one monomer (Chains A and B) have the inhibitor bound to the active site. This dimer is the component of the asymmetric unit. In vivo, the protease domain is part of a multi enzyme protein (having both protease and helicase activities). The NS3 protease domain with the NS4A peptide is known to be catalytically active in the absence of the helicase domain, although it is not known whether it is active as a monomer or dimer.
A
GLY
12
A
GLY
24
HELX_P
A
GLY
23
A
GLY
35
1
1
12
A
TYR
56
A
TYR
68
HELX_P
A
GLY
60
A
GLY
72
1
2
5
A
ILE
132
A
ILE
144
HELX_P
A
LYS
136
A
LYS
148
1
3
5
A
VAL
172
A
VAL
184
HELX_P
A
SER
181
A
SER
193
1
4
10
C
TYR
56
C
TYR
68
HELX_P
C
GLY
60
C
GLY
72
1
5
5
C
VAL
78
C
VAL
90
HELX_P
C
GLN
80
C
GLN
92
5
6
3
C
ILE
132
C
ILE
144
HELX_P
C
LYS
136
C
LYS
148
1
7
5
C
VAL
172
C
VAL
184
HELX_P
C
MET
179
C
MET
191
1
8
8
disulf
2.911
C
CYS
97
C
SG
CYS
109
1_555
C
CYS
145
C
SG
CYS
157
1_555
covale
1.398
none
A
SER
139
A
OG
SER
151
1_555
A
BN6
999
F
C33
BN6
1_555
metalc
2.206
A
CYS
97
A
SG
CYS
109
1_555
A
ZN
901
E
ZN
ZN
1_555
metalc
2.370
A
CYS
99
A
SG
CYS
111
1_555
A
ZN
901
E
ZN
ZN
1_555
metalc
2.245
A
CYS
145
A
SG
CYS
157
1_555
A
ZN
901
E
ZN
ZN
1_555
metalc
1.567
A
ZN
901
E
ZN
ZN
1_555
A
HOH
1003
H
O
HOH
1_555
metalc
2.056
C
CYS
97
C
SG
CYS
109
1_555
C
ZN
902
G
ZN
ZN
1_555
metalc
2.078
C
CYS
99
C
SG
CYS
111
1_555
C
ZN
902
G
ZN
ZN
1_555
metalc
1.996
C
CYS
145
C
SG
CYS
157
1_555
C
ZN
902
G
ZN
ZN
1_555
metalc
1.816
C
ZN
902
G
ZN
ZN
1_555
C
HOH
903
J
O
HOH
1_555
VIRAL PROTEIN
HCV, Hepatitis C protease, NS3 protease, ketoamide inhibitor, VIRAL PROTEIN
A
ALA
1
A
ALA
13
1
A
PRO
2
A
PRO
14
0.14
NP_803144
GB
1
1
28921568
APITAYAQQTRGLLGCIITSLTGRDKNQVEGEVQIVSTATQTFLATCINGVCWTVYHGAGTRTIASPKGPVIQMYTNVDQ
DLVGWPAPQGSRSLTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLLSPRPISYLKGSSGGPLLCPAGHAVGLFRAAVCT
RGVAKAVDFIPVENLETTMRS
AAT94284
GB
2
575
51039195
GCVVIVGRIVLSGKPAIIP
1
181
2F9V
-11
189
28921568
A
1
1
201
1
181
2F9V
-11
189
28921568
C
1
1
201
575
593
2F9V
19
41
51039195
B
2
1
23
575
593
2F9V
19
41
51039195
D
2
1
23
1
cloning artifact
MET
-11
2F9V
A
28921568
GB
1
1
cloning artifact
GLY
-10
2F9V
A
28921568
GB
2
1
cloning artifact
ALA
-9
2F9V
A
28921568
GB
3
1
cloning artifact
SER
-8
2F9V
A
28921568
GB
4
1
cloning artifact
MET
-7
2F9V
A
28921568
GB
5
1
cloning artifact
THR
-6
2F9V
A
28921568
GB
6
1
cloning artifact
GLY
-5
2F9V
A
28921568
GB
7
1
cloning artifact
GLY
-4
2F9V
A
28921568
GB
8
1
cloning artifact
GLN
-3
2F9V
A
28921568
GB
9
1
cloning artifact
GLN
-2
2F9V
A
28921568
GB
10
1
cloning artifact
MET
-1
2F9V
A
28921568
GB
11
1
cloning artifact
GLY
0
2F9V
A
28921568
GB
12
1
cloning artifact
GLY
182
2F9V
A
28921568
GB
194
1
cloning artifact
SER
183
2F9V
A
28921568
GB
195
1
expression tag
HIS
184
2F9V
A
28921568
GB
196
1
expression tag
HIS
185
2F9V
A
28921568
GB
197
1
expression tag
HIS
186
2F9V
A
28921568
GB
198
1
expression tag
HIS
187
2F9V
A
28921568
GB
199
1
expression tag
HIS
188
2F9V
A
28921568
GB
200
1
expression tag
HIS
189
2F9V
A
28921568
GB
201
2
cloning artifact
MET
-11
2F9V
C
28921568
GB
1
2
cloning artifact
GLY
-10
2F9V
C
28921568
GB
2
2
cloning artifact
ALA
-9
2F9V
C
28921568
GB
3
2
cloning artifact
SER
-8
2F9V
C
28921568
GB
4
2
cloning artifact
MET
-7
2F9V
C
28921568
GB
5
2
cloning artifact
THR
-6
2F9V
C
28921568
GB
6
2
cloning artifact
GLY
-5
2F9V
C
28921568
GB
7
2
cloning artifact
GLY
-4
2F9V
C
28921568
GB
8
2
cloning artifact
GLN
-3
2F9V
C
28921568
GB
9
2
cloning artifact
GLN
-2
2F9V
C
28921568
GB
10
2
cloning artifact
MET
-1
2F9V
C
28921568
GB
11
2
cloning artifact
GLY
0
2F9V
C
28921568
GB
12
2
cloning artifact
GLY
182
2F9V
C
28921568
GB
194
2
cloning artifact
SER
183
2F9V
C
28921568
GB
195
2
expression tag
HIS
184
2F9V
C
28921568
GB
196
2
expression tag
HIS
185
2F9V
C
28921568
GB
197
2
expression tag
HIS
186
2F9V
C
28921568
GB
198
2
expression tag
HIS
187
2F9V
C
28921568
GB
199
2
expression tag
HIS
188
2F9V
C
28921568
GB
200
2
expression tag
HIS
189
2F9V
C
28921568
GB
201
3
cloning artifact
LYS
19
2F9V
B
51039195
GB
1
3
cloning artifact
LYS
20
2F9V
B
51039195
GB
2
3
CYS
engineered mutation
SER
22
2F9V
B
51039195
GB
576
4
3
cloning artifact
LYS
40
2F9V
B
51039195
GB
22
3
cloning artifact
LYS
41
2F9V
B
51039195
GB
23
4
cloning artifact
LYS
19
2F9V
D
51039195
GB
1
4
cloning artifact
LYS
20
2F9V
D
51039195
GB
2
4
CYS
engineered mutation
SER
22
2F9V
D
51039195
GB
576
4
4
cloning artifact
LYS
40
2F9V
D
51039195
GB
22
4
cloning artifact
LYS
41
2F9V
D
51039195
GB
23
7
2
7
3
7
7
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
TYR
6
A
TYR
18
A
GLN
9
A
GLN
21
B
VAL
24
B
VAL
6
B
VAL
30
B
VAL
12
A
VAL
33
A
VAL
45
A
SER
37
A
SER
49
A
THR
42
A
THR
54
A
ILE
48
A
ILE
60
A
VAL
51
A
VAL
63
A
VAL
55
A
VAL
67
A
LEU
82
A
LEU
94
A
PRO
86
A
PRO
98
A
TYR
75
A
TYR
87
A
ASN
77
A
ASN
89
A
ILE
64
A
ILE
76
A
SER
66
A
SER
78
A
GLY
69
A
GLY
81
A
VAL
71
A
VAL
83
A
ASP
103
A
ASP
115
A
VAL
107
A
VAL
119
A
VAL
113
A
VAL
125
A
ARG
118
A
ARG
130
A
ARG
123
A
ARG
135
A
PRO
131
A
PRO
143
A
VAL
163
A
VAL
175
A
PRO
171
A
PRO
183
A
ALA
150
A
ALA
162
A
THR
160
A
THR
172
A
PRO
142
A
PRO
154
A
LEU
144
A
LEU
156
A
ASP
103
A
ASP
115
A
VAL
107
A
VAL
119
B
ALA
36
B
ALA
18
B
ILE
37
B
ILE
19
D
SER
22
D
SER
4
D
VAL
30
D
VAL
12
C
THR
63
C
THR
75
C
ILE
64
C
ILE
76
B
ALA
36
B
ALA
18
B
ILE
37
B
ILE
19
D
SER
22
D
SER
4
D
VAL
30
D
VAL
12
C
VAL
33
C
VAL
45
C
SER
37
C
SER
49
C
THR
42
C
THR
54
C
ILE
48
C
ILE
60
C
VAL
51
C
VAL
63
C
VAL
55
C
VAL
67
C
LEU
82
C
LEU
94
C
PRO
86
C
PRO
98
C
TYR
75
C
TYR
87
C
ASN
77
C
ASN
89
C
ASP
103
C
ASP
115
C
VAL
107
C
VAL
119
C
VAL
113
C
VAL
125
C
GLY
120
C
GLY
132
C
ARG
123
C
ARG
135
C
PRO
131
C
PRO
143
C
VAL
163
C
VAL
175
C
PRO
171
C
PRO
183
C
ALA
150
C
ALA
162
C
THR
160
C
THR
172
C
PRO
142
C
PRO
154
C
LEU
144
C
LEU
156
C
ASP
103
C
ASP
115
C
VAL
107
C
VAL
119
BINDING SITE FOR RESIDUE ZN A 901
A
ZN
901
Software
4
BINDING SITE FOR RESIDUE ZN C 902
C
ZN
902
Software
4
BINDING SITE FOR RESIDUE BN6 A 999
A
BN6
999
Software
13
A
CYS
97
A
CYS
109
4
1_555
A
CYS
99
A
CYS
111
4
1_555
A
CYS
145
A
CYS
157
4
1_555
A
HOH
1003
H
HOH
4
1_555
C
CYS
97
C
CYS
109
4
1_555
C
CYS
99
C
CYS
111
4
1_555
C
CYS
145
C
CYS
157
4
1_555
C
HOH
903
J
HOH
4
1_555
A
GLN
41
A
GLN
53
13
1_555
A
THR
42
A
THR
54
13
1_555
A
HIS
57
A
HIS
69
13
1_555
A
ILE
132
A
ILE
144
13
1_555
A
LYS
136
A
LYS
148
13
1_555
A
GLY
137
A
GLY
149
13
1_555
A
SER
138
A
SER
150
13
1_555
A
SER
139
A
SER
151
13
1_555
A
ARG
155
A
ARG
167
13
1_555
A
ALA
156
A
ALA
168
13
1_555
A
ALA
157
A
ALA
169
13
1_555
A
CYS
159
A
CYS
171
13
1_555
A
ASP
168
A
ASP
180
13
1_555
155
H 3 2