1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Schein, C.H.
Oezguen, N.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Peptides
0196-9781
27
1676
1684
10.1016/j.peptides.2006.01.018
16540201
NMR structure of the viral peptide linked to the genome (VPg) of poliovirus.
2006
US
Proteins
PSFGEY
0867
1097-0134
10.1002/prot.20891
16498624
Novel, structure-based mechanism for uridylylation of the genome-linked peptide (VPg) of picornaviruses
2006
10.2210/pdb2bbl/pdb
pdb_00002bbl
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
2357.749
Genome linked protein VPg
residues 1-22
1
syn
polymer
no
no
GAYTGLPNKKPNVPTIRTAKVQ
GAYTGLPNKKPNVPTIRTAKVQ
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
database_2
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2006-03-28
1
1
2008-05-01
1
2
2011-07-13
1
3
2022-03-09
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
NMR structures of the peptide linked to the genome (VPg) of poliovirus
RCSB
Y
RCSB
2005-10-17
REL
REL
This sequence occurs naturally in human poliovirus serotype 1.
sample
Spectra were collected at 283K
target function
50
10
2D TOCSY
2D NOESY
DQF-COSY
10mM sodium phosphate
7.2
atmospheric
atm
283
K
Refinement of the NOE assignment is performed iteratively. NOAH passes geometrical constraints derived from the NOE list to DIAMOD. DIAMOD calculates a bundle of structures with least violation of the constraints. The new bundle of structures is the basis for refinement of the assignments in NOAH.
automatic NOE assignment in combination with distance geometry
1
fewest violations
VPg 2.78 mM, 0.01 M sodium phosphate buffer, pH 7.2, 4M deuterated Trimethylamine oxide, 10% D2O
10%D2O
Mumenthaler, C. et al
structure solution
NOAH
2.0
Guentert, P. et al
structure solution
DIAMOD
2.2
data analysis
Felix
Guentert, P. et al
refinement
DIAMOD
2.2
750
Varian
UNITYPLUS
600
Varian
UNITYPLUS
GLY
1
n
1
GLY
1
A
ALA
2
n
2
ALA
2
A
TYR
3
n
3
TYR
3
A
THR
4
n
4
THR
4
A
GLY
5
n
5
GLY
5
A
LEU
6
n
6
LEU
6
A
PRO
7
n
7
PRO
7
A
ASN
8
n
8
ASN
8
A
LYS
9
n
9
LYS
9
A
LYS
10
n
10
LYS
10
A
PRO
11
n
11
PRO
11
A
ASN
12
n
12
ASN
12
A
VAL
13
n
13
VAL
13
A
PRO
14
n
14
PRO
14
A
THR
15
n
15
THR
15
A
ILE
16
n
16
ILE
16
A
ARG
17
n
17
ARG
17
A
THR
18
n
18
THR
18
A
ALA
19
n
19
ALA
19
A
LYS
20
n
20
LYS
20
A
VAL
21
n
21
VAL
21
A
GLN
22
n
22
GLN
22
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
ASN
8
64.73
102.68
1
A
LYS
9
-131.86
-83.76
1
A
LYS
10
-178.97
-63.97
1
A
ASN
12
-166.48
83.34
2
A
ALA
2
61.58
172.67
2
A
THR
4
-149.02
-49.31
2
A
ASN
8
57.32
75.69
2
A
LYS
9
-114.24
-81.98
2
A
LYS
10
-179.38
-62.94
2
A
ASN
12
-163.50
90.59
3
A
ALA
2
58.52
171.40
3
A
ASN
8
61.48
103.20
3
A
LYS
9
-130.12
-88.14
3
A
LYS
10
-178.61
-66.08
3
A
ASN
12
-172.06
96.25
4
A
ALA
2
61.60
172.78
4
A
THR
4
-147.90
-49.06
4
A
ASN
8
61.41
77.16
4
A
LYS
9
-115.28
-82.43
4
A
LYS
10
-179.46
-63.17
4
A
ASN
12
-164.56
90.08
5
A
ALA
2
59.67
171.51
5
A
ASN
8
64.03
103.68
5
A
LYS
9
-131.76
-89.92
5
A
LYS
10
-179.08
-66.63
5
A
ASN
12
-172.29
96.90
6
A
ASN
8
64.51
103.74
6
A
LYS
9
-131.08
-87.84
6
A
LYS
10
-178.88
-65.49
6
A
ASN
12
-170.04
93.86
7
A
ASN
8
63.78
115.19
7
A
LYS
9
-134.39
-88.33
7
A
LYS
10
-178.06
-60.71
7
A
ASN
12
-140.17
55.81
8
A
ASN
8
63.37
102.24
8
A
LYS
9
-130.61
-87.18
8
A
LYS
10
-178.53
-65.48
8
A
ASN
12
-170.09
91.82
9
A
ASN
8
37.45
90.48
9
A
LYS
9
-116.29
-84.13
9
A
LYS
10
-177.94
-64.29
9
A
ASN
12
-169.17
84.09
10
A
ASN
8
60.42
91.40
10
A
LYS
9
-117.70
-89.44
10
A
LYS
10
179.12
-64.99
10
A
ASN
12
-171.30
90.91
NMR structures of the peptide linked to the genome (VPg) of poliovirus in a stabilizing solvent
1
N
N
A
ILE
16
A
ILE
16
HELX_P
A
GLN
22
A
GLN
22
1
1
7
VIRAL PROTEIN
peptide primer, RNA synthesis, uridylylation, viral replication, polymerase cofactor, VIRAL PROTEIN
NP_740475
GB
1
1
25121847
GAYTGLPNKKPNVPTIRTAKVQ
1
22
2BBL
1
22
25121847
A
1
1
22
1
P 1