1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Guenther, U.L.
Weyrauch, B.
Schaffhausen, B.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Biochemistry
BICHAW
0033
0006-2960
42
11120
11127
10.1021/bi034353x
14503862
Nuclear magnetic resonance structure of the P395S mutant of the N-SH2 domain of the p85 subunit of PI3 kinase: an SH2 domain with altered specificity
2003
10.2210/pdb1oo3/pdb
pdb_00001oo3
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
12860.347
Phosphatidylinositol 3-kinase regulatory alpha subunit
p85 N-SH2
P395S
1
man
polymer
PI3-kinase p85-alpha subunit
no
no
GMNNNMSLQDAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKSIKIFHRDGKYGFSDSLTFNS
VVELINHYRNESLAQYNPKLDVKLLYPVSKY
GMNNNMSLQDAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKSIKIFHRDGKYGFSDSLTFNS
VVELINHYRNESLAQYNPKLDVKLLYPVSKY
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
cattle
Bos
Escherichia
sample
9913
Bos taurus
562
Escherichia coli
Plasmid
database_2
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
struct_ref_seq_dif
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2003-03-25
1
1
2008-04-29
1
2
2011-07-13
1
3
2021-11-10
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
_struct_ref_seq_dif.details
The same protein complexed to a peptide derived from PDGFr
RCSB
Y
PDBJ
2003-03-03
REL
The structure was determined using triple-resonance NMR spectroscopy.
1
3D_13C-separated_NOESY
3D_15N-separated_NOESY
HNCA-J
HN(CO)CA
HCC(CO)NH
CC(CO)NH
0.1M KCl
6.8
ambient
303
K
1113 NOE-derived, distance constraints, 85 dihedral angle restraints
distance geometry, simulated annealing
minimized average structure
1.5mM P395S-15N,13C, 0.1M KCl
90% H2O/10% D2O
Guentert
structure solution
DYANA
1.5
BRUKER
collection
XwinNMR
2.5
MSI Inc.
refinement
Discover
97.0
Kjaer
data analysis
Pronto3D
19990506
Cornilescu, Bax
structure solution
TALOS
1999.019.15.47
Pristovsek
data analysis
nmr2st
1.1
500
Bruker
AMX
600
Bruker
DMX
800
Bruker
DRX
GLY
1
n
1
GLY
1
A
MET
2
n
2
MET
2
A
ASN
3
n
3
ASN
3
A
ASN
4
n
4
ASN
4
A
ASN
5
n
5
ASN
5
A
MET
6
n
6
MET
6
A
SER
7
n
7
SER
7
A
LEU
8
n
8
LEU
8
A
GLN
9
n
9
GLN
9
A
ASP
10
n
10
ASP
10
A
ALA
11
n
11
ALA
11
A
GLU
12
n
12
GLU
12
A
TRP
13
n
13
TRP
13
A
TYR
14
n
14
TYR
14
A
TRP
15
n
15
TRP
15
A
GLY
16
n
16
GLY
16
A
ASP
17
n
17
ASP
17
A
ILE
18
n
18
ILE
18
A
SER
19
n
19
SER
19
A
ARG
20
n
20
ARG
20
A
GLU
21
n
21
GLU
21
A
GLU
22
n
22
GLU
22
A
VAL
23
n
23
VAL
23
A
ASN
24
n
24
ASN
24
A
GLU
25
n
25
GLU
25
A
LYS
26
n
26
LYS
26
A
LEU
27
n
27
LEU
27
A
ARG
28
n
28
ARG
28
A
ASP
29
n
29
ASP
29
A
THR
30
n
30
THR
30
A
ALA
31
n
31
ALA
31
A
ASP
32
n
32
ASP
32
A
GLY
33
n
33
GLY
33
A
THR
34
n
34
THR
34
A
PHE
35
n
35
PHE
35
A
LEU
36
n
36
LEU
36
A
VAL
37
n
37
VAL
37
A
ARG
38
n
38
ARG
38
A
ASP
39
n
39
ASP
39
A
ALA
40
n
40
ALA
40
A
SER
41
n
41
SER
41
A
THR
42
n
42
THR
42
A
LYS
43
n
43
LYS
43
A
MET
44
n
44
MET
44
A
HIS
45
n
45
HIS
45
A
GLY
46
n
46
GLY
46
A
ASP
47
n
47
ASP
47
A
TYR
48
n
48
TYR
48
A
THR
49
n
49
THR
49
A
LEU
50
n
50
LEU
50
A
THR
51
n
51
THR
51
A
LEU
52
n
52
LEU
52
A
ARG
53
n
53
ARG
53
A
LYS
54
n
54
LYS
54
A
GLY
55
n
55
GLY
55
A
GLY
56
n
56
GLY
56
A
ASN
57
n
57
ASN
57
A
ASN
58
n
58
ASN
58
A
LYS
59
n
59
LYS
59
A
SER
60
n
60
SER
60
A
ILE
61
n
61
ILE
61
A
LYS
62
n
62
LYS
62
A
ILE
63
n
63
ILE
63
A
PHE
64
n
64
PHE
64
A
HIS
65
n
65
HIS
65
A
ARG
66
n
66
ARG
66
A
ASP
67
n
67
ASP
67
A
GLY
68
n
68
GLY
68
A
LYS
69
n
69
LYS
69
A
TYR
70
n
70
TYR
70
A
GLY
71
n
71
GLY
71
A
PHE
72
n
72
PHE
72
A
SER
73
n
73
SER
73
A
ASP
74
n
74
ASP
74
A
SER
75
n
75
SER
75
A
LEU
76
n
76
LEU
76
A
THR
77
n
77
THR
77
A
PHE
78
n
78
PHE
78
A
ASN
79
n
79
ASN
79
A
SER
80
n
80
SER
80
A
VAL
81
n
81
VAL
81
A
VAL
82
n
82
VAL
82
A
GLU
83
n
83
GLU
83
A
LEU
84
n
84
LEU
84
A
ILE
85
n
85
ILE
85
A
ASN
86
n
86
ASN
86
A
HIS
87
n
87
HIS
87
A
TYR
88
n
88
TYR
88
A
ARG
89
n
89
ARG
89
A
ASN
90
n
90
ASN
90
A
GLU
91
n
91
GLU
91
A
SER
92
n
92
SER
92
A
LEU
93
n
93
LEU
93
A
ALA
94
n
94
ALA
94
A
GLN
95
n
95
GLN
95
A
TYR
96
n
96
TYR
96
A
ASN
97
n
97
ASN
97
A
PRO
98
n
98
PRO
98
A
LYS
99
n
99
LYS
99
A
LEU
100
n
100
LEU
100
A
ASP
101
n
101
ASP
101
A
VAL
102
n
102
VAL
102
A
LYS
103
n
103
LYS
103
A
LEU
104
n
104
LEU
104
A
LEU
105
n
105
LEU
105
A
TYR
106
n
106
TYR
106
A
PRO
107
n
107
PRO
107
A
VAL
108
n
108
VAL
108
A
SER
109
n
109
SER
109
A
LYS
110
n
110
LYS
110
A
TYR
111
n
111
TYR
111
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LEU
36
A
N
LEU
36
A
O
THR
51
A
O
THR
51
1
A
A
HG1
O
THR
TYR
34
106
1.49
1
A
A
O
HG
LEU
SER
50
60
1.52
1
A
A
O
HG1
LEU
THR
76
77
1.54
1
A
A
HG
OE1
SER
GLU
80
83
1.56
1
A
A
LEU
GLN
8
9
-146.12
1
A
A
TRP
GLY
15
16
-143.73
1
A
A
LYS
LEU
26
27
147.48
1
6.16
0.90
118.30
124.46
A
A
A
CB
CG
OD1
ASP
ASP
ASP
10
10
10
N
1
-6.56
0.90
118.30
111.74
A
A
A
CB
CG
OD2
ASP
ASP
ASP
10
10
10
N
1
6.46
0.90
118.30
124.76
A
A
A
CB
CG
OD1
ASP
ASP
ASP
17
17
17
N
1
-6.48
0.90
118.30
111.82
A
A
A
CB
CG
OD2
ASP
ASP
ASP
17
17
17
N
1
3.92
0.50
120.30
124.22
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
20
20
20
N
1
-3.48
0.50
120.30
116.82
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
20
20
20
N
1
3.94
0.50
120.30
124.24
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
28
28
28
N
1
-3.34
0.50
120.30
116.96
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
28
28
28
N
1
-5.65
0.90
118.30
112.65
A
A
A
CB
CG
OD2
ASP
ASP
ASP
29
29
29
N
1
3.71
0.50
120.30
124.01
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
38
38
38
N
1
-3.36
0.50
120.30
116.94
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
38
38
38
N
1
5.74
0.90
118.30
124.04
A
A
A
CB
CG
OD1
ASP
ASP
ASP
39
39
39
N
1
-6.04
0.90
118.30
112.26
A
A
A
CB
CG
OD2
ASP
ASP
ASP
39
39
39
N
1
8.59
1.30
111.50
120.09
A
A
A
ND1
CE1
NE2
HIS
HIS
HIS
45
45
45
N
1
4.25
0.50
120.30
124.55
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
53
53
53
N
1
8.43
1.30
111.50
119.93
A
A
A
ND1
CE1
NE2
HIS
HIS
HIS
65
65
65
N
1
4.00
0.50
120.30
124.30
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
66
66
66
N
1
-3.19
0.50
120.30
117.11
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
66
66
66
N
1
-5.72
0.90
118.30
112.58
A
A
A
CB
CG
OD2
ASP
ASP
ASP
67
67
67
N
1
-5.66
0.90
118.30
112.64
A
A
A
CB
CG
OD2
ASP
ASP
ASP
74
74
74
N
1
8.45
1.30
111.50
119.95
A
A
A
ND1
CE1
NE2
HIS
HIS
HIS
87
87
87
N
1
4.04
0.50
120.30
124.34
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
89
89
89
N
1
-3.47
0.50
120.30
116.83
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
89
89
89
N
1
-5.49
0.90
118.30
112.81
A
A
A
CB
CG
OD2
ASP
ASP
ASP
101
101
101
N
1
A
A
CD
OE2
GLU
GLU
12
12
0.114
0.011
1.252
1.366
N
1
A
A
CD
OE2
GLU
GLU
21
21
0.113
0.011
1.252
1.365
N
1
A
A
CD
OE2
GLU
GLU
22
22
0.116
0.011
1.252
1.368
N
1
A
A
CD
OE2
GLU
GLU
25
25
0.116
0.011
1.252
1.368
N
1
A
A
CD
OE2
GLU
GLU
83
83
0.110
0.011
1.252
1.362
N
1
A
A
CD
OE2
GLU
GLU
91
91
0.112
0.011
1.252
1.364
N
1
A
SER
7
-82.81
46.95
1
A
TRP
13
-59.53
-2.71
1
A
ASP
17
-160.69
89.87
1
A
ARG
20
71.04
-51.88
1
A
GLU
21
-63.37
21.94
1
A
GLU
22
177.96
-53.16
1
A
LEU
27
-36.97
-39.66
1
A
ALA
31
72.57
-106.35
1
A
LEU
36
-164.68
112.98
1
A
MET
44
-151.42
-78.94
1
A
HIS
45
-152.03
-130.05
1
A
PHE
64
70.47
-179.53
1
A
ARG
66
25.22
55.88
1
A
ASP
67
69.51
-41.71
1
A
ASP
74
-130.84
-116.32
1
A
THR
77
79.65
-51.98
1
A
ASN
79
-154.01
-67.80
1
A
VAL
82
-141.35
-44.61
1
A
ASN
86
-169.55
97.62
1
A
TYR
88
67.80
-53.71
1
A
ALA
94
-62.07
4.04
1
A
TYR
96
-98.59
-60.89
1
A
ASP
101
50.95
178.53
1
A
VAL
102
-135.47
-96.34
1
A
LEU
104
-161.20
35.92
minimized average
P395S mutant of the p85 regulatory subunit of the N-terminal src homology 2 domain of PI3-Kinase
1
N
N
A
ASN
24
A
ASN
24
HELX_P
A
THR
30
A
THR
30
1
1
7
A
SER
92
A
SER
92
HELX_P
A
TYR
96
A
TYR
96
5
2
5
PROTEIN BINDING
src homology 2 domain p85 regulatory subunit mutant, protein binding
P85A_BOVIN
UNP
1
321
P23727
GMNNNMSLQDAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGNNKLIKIFHRDGKYGFSDPLTFNS
VVELINHYRNESLAQYNPKLDVKLLYPVSKY
321
431
1OO3
1
111
P23727
A
1
1
111
1
LEU
conflict
SER
60
1OO3
A
P23727
UNP
380
60
1
PRO
engineered mutation
SER
75
1OO3
A
P23727
UNP
395
75
2
anti-parallel
A
THR
34
A
THR
34
A
VAL
37
A
VAL
37
A
LEU
50
A
LEU
50
A
ARG
53
A
ARG
53